# Target Fidelity and Failure: Structure–Activity Relationship of High-Molecular-Mass Penicillin-Binding Proteins (HMM-PBPs) in Refractory Granulicatella adiacens Endocarditis

**Authors:** Paola Conti, Alberto Pagotto, Sebastiano A. Fortuna, Alessandra Giardina, Grete F. Privitera, Ester Rosa, Assunta Sartor, Carlo Tascini, Floriana Campanile

PMC · DOI: 10.3390/antibiotics15020168 · Antibiotics · 2026-02-05

## TL;DR

This study explores how a specific type of bacteria, Granulicatella adiacens, interacts with antibiotics, focusing on proteins that affect drug resistance and treatment effectiveness.

## Contribution

The study is the first to characterize HMM-PBPs in G. adiacens and their interactions with beta-lactam antibiotics.

## Key findings

- The clinical isolate showed resistance to ampicillin and ceftriaxone with higher MICs compared to the reference strain.
- Combination therapy with beta-lactams enhanced inhibition of key HMM-PBPs involved in peptidoglycan synthesis.
- Altered PBP beta-lactam interactions in the clinical isolate suggest decreased drug affinity and target availability.

## Abstract

Background/Objectives: Granulicatella adiacens infective endocarditis is conventionally managed with penicillin, ampicillin, or ceftriaxone in combination with gentamicin, although double beta-lactam regiments have been proposed a safer alternative to reduce aminoglycoside-associated nephrotoxicity. To date, the High-Molecular-Mass Penicillin-Binding Proteins (HMM-PBPs) of G. adiacens and their affinities for beta-lactam antibiotics have not been previously characterized. This study investigated the HMM-PBP profile of G. adiacens, with particular interest on sequence alterations and beta-lactam binding properties, both as single agents and in combination. Methods: Beta-lactam activity, synergistic interactions and PBP binding affinities were evaluated in a clinical isolate (IS 48) and compared with those in the reference strain ATCC 49175. Binding of PBPs to ampicillin, ceftriaxone, and ceftobiprole, alone or in combination, was investigated by Bocillin-FL labeling. PBP homology and conserved active-sites motifs were assessed by sequence alignment, and pbp gene mutations were identified by whole-genome sequencing. Results: The clinical isolate was non-susceptible to ampicillin, resistant to ceftriaxone and exhibited higher minimum inhibitory concentrations (MICs) for ceftobiprole relative to the fully susceptible ATCC reference strain. Five HMM PBPs with high enterococcal homology, were identified. In the IS 48 isolate, the class A PBP showed distinct amino acid substitutions in proximity to the catalytic centers. Despite these alterations, PBP1A and PBP2A were strongly inhibited by the tested beta-lactams, whereas PBP2 and PBP2B demonstrated low acylation rates. Combination of ampicillin with either ceftobiprole or ceftriaxone resulted in enhanced acylation of the three bifunctional HMM PBPs compared with monotreatment. IC50 values were consistently higher for the IS 48 clinical isolate, suggesting decreased target availability and/or reduced beta-lactam affinity under clinical conditions. Conclusions: The resistance phenotype of G. adiacens clinical isolate appears to be primarily associated with altered PBP beta-lactam interactions. Nonetheless, beta-lactam combination regimes remain effective by achieving substantial inhibition of key HMM-PBPs involved in peptidoglycan synthesis, thereby supporting the rationale for dual beta-lactam therapy in this setting.

## Linked entities

- **Proteins:** pbp1A (multimodular transpeptidase-transglycosylase PBP 1A), pbp2a (penicillin-binding protein PBP2A), Pbp2 (phosphatidylethanolamine binding protein 2), pbp2b (penicillin-binding protein PBP2B)
- **Chemicals:** penicillin (PubChem CID 2349), ampicillin (PubChem CID 6249), ceftriaxone (PubChem CID 5479530), gentamicin (PubChem CID 3467), ceftobiprole (PubChem CID 135413542), Bocillin-FL (PubChem CID 52941401)
- **Diseases:** endocarditis (MONDO:0005025)
- **Species:** Granulicatella adiacens (taxon 46124)

## Full-text entities

- **Genes:** PEBP1 (phosphatidylethanolamine binding protein 1) [NCBI Gene 5037] {aka HCNP, HCNPpp, HEL-210, HEL-S-34, HEL-S-96, PBP}
- **Diseases:** valvular pathologies (MESH:D006349), bacteraemia (MESH:C531821), injury to (MESH:D014947), osteoarticular infections (MESH:D014394), streptococcal IE (MESH:D013290), infections (MESH:D007239), NVS (MESH:D008881), Endocarditis (MESH:D004696)
- **Chemicals:** Ceftaroline (MESH:C490727), polyacrylamide (MESH:C016679), agar (MESH:D000362), P (MESH:D010758), aminoglycoside (MESH:D000617), methanol (MESH:D000432), Glycine (MESH:D005998), Ceftobiprole (MESH:C443755), Methicillin (MESH:D008712), Bocillin-FL (MESH:C118961), gentamicin (MESH:D005839), SDS (MESH:D012967), acetic acid (MESH:D019342), Laemmli buffer (MESH:C088816), cefepime (MESH:D000077723), vancomycin (MESH:D014640), carbapenems (MESH:D015780), BRP (MESH:D009267), cephalothin (MESH:D002512), CRO (MESH:D002443), amino acid (MESH:D000596), cephalosporin (MESH:D002511), penicillin (MESH:D010406), cefuroxime (MESH:D002444), cefotaxime (MESH:D002439), CP025020.1 (-), hydrogen (MESH:D006859), Beta-Lactam (MESH:D047090), IS (MESH:D007455), HMM (MESH:D006585), L-cysteine (MESH:D003545), AMP (MESH:D000667)
- **Species:** Enterococcus durans (species) [taxon 53345], Carnobacterium maltaromaticum (species) [taxon 2751], Abiotrophia para-adiacens (species) [taxon 191553], Granulicatella adiacens (species) [taxon 46124], Streptococcus pneumoniae (species) [taxon 1313], Streptococcus pyogenes (species) [taxon 1314], Enterococcus faecalis (species) [taxon 1351], Granulicatella adiacens ATCC 49175 (strain) [taxon 638301], Homo sapiens (human, species) [taxon 9606], Streptococcus pneumoniae D39 (strain) [taxon 373153], Staphylococcus aureus (species) [taxon 1280], Granulicatella (genus) [taxon 117563], Enterococcus faecium (species) [taxon 1352], Trichococcus flocculiformis (species) [taxon 82803], Bacillota (clostridial firmicutes, phylum) [taxon 1239]
- **Mutations:** I527F, N131S, E618D, M67I, A/S, N94S, T581N, S401L, Asp 513, N17D, Ser 667, A391V, S667L, A622V, S48A, M21L, G572V, K471N, S679A, Ala 622, S621A, T656A, Q35P, E467D, D513N, V348I, D837N, S260A, N93D, threonine residue at position +1, K711R, Y10H, N690K, I604V
- **Cell lines:** ATCC 49175 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_0023), ATCC 47077 OG1RF — Homo sapiens (Human), Cervical squamous cell carcinoma, not otherwise specified, Cancer cell line (CVCL_JF81)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12937247/full.md

## References

26 references — full list in the complete paper: https://tomesphere.com/paper/PMC12937247/full.md

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Source: https://tomesphere.com/paper/PMC12937247