# Mechanistic Insights into the Antimicrobial Effect of Benzodioxane-Benzamides Against Escherichia coli

**Authors:** Lorenzo Suigo, Alessia Lanzini, Valentina Straniero, William Margolin

PMC · DOI: 10.3390/antibiotics15020126 · Antibiotics · 2026-01-27

## TL;DR

This study shows that BDOBs can inhibit E. coli cell division by targeting FtsZ, but resistance can arise through mutations in FtsZ or other proteins.

## Contribution

The study provides new evidence that BDOBs target the interdomain cleft of E. coli FtsZ and identifies FtsZ-independent resistance mechanisms.

## Key findings

- BDOBs efficiently target E. coli FtsZ when efflux pumps are disabled.
- Resistance mutations cluster in or near the interdomain cleft of FtsZ.
- Extragenic mutants, including a hyperfission variant of FtsW, confer resistance to BDOBs.

## Abstract

Background/Objectives: The bacterial cell division machinery is emerging as an attractive target for antimicrobial compounds. FtsZ, a highly conserved essential division protein, is the target for a number of small molecules such as benzamides. Recent studies show that benzodioxane-benzamides (BDOBs) are among the most potent inhibitors of FtsZ function in Gram-positive bacteria, although their ability to inhibit Gram-negative FtsZ, in particular Escherichia coli FtsZ, has been more controversial. Methods: Here, we use genetic and cytological methods to demonstrate that FtsZ of efflux pump-disabled E. coli can be efficiently targeted by BDOBs. Results: We show that engineered mutants and spontaneous variants map in or near the interdomain cleft (IDC) of FtsZ that confers resistance to BDOBs, similar to previous results with Gram-positive FtsZs. We also uncover spontaneous extragenic mutants that can confer high levels of resistance to at least one potent BDOB, including a mutant that encodes a novel hyperfission variant of the essential cell division protein FtsW. Conclusions: Our evidence indicates that as with Gram-positive bacteria, the IDC of Gram-negative bacterial FtsZ is directly targeted by BDOBs, provided efflux pumps are disabled. We also conclude that FtsZ-independent factors can influence the effect of BDOBs on E. coli cell division, including activation of division septum synthesis.

## Linked entities

- **Genes:** ftsZ (cell division protein FtsZ) [NCBI Gene 857456], ftsW (putative plastid division protein) [NCBI Gene 800983]
- **Proteins:** ftsZ (cell division protein FtsZ), ftsW (putative plastid division protein)
- **Species:** Escherichia coli (taxon 562)

## Full-text entities

- **Genes:** glycosyl transferase [NCBI Gene 3829361]
- **Diseases:** deaths (MESH:D003643), infections (MESH:D007239), Gram-negative bacterial infections (MESH:D016905), bacterial infections (MESH:D001424), injury to (MESH:D014947)
- **Chemicals:** (S (MESH:D013455), 4XMIC (-), amino acids (MESH:D000596), cephalosporin (MESH:D002511), Agarose (MESH:D012685), L-arabinose (MESH:D001089), IPTG (MESH:D007544), ampicillin (MESH:D000667), berberine (MESH:D001599), sanA (MESH:C015516), DMSO (MESH:D004121), chloramphenicol (MESH:D002701), benzamide (MESH:C037689), Benzamides (MESH:D001549), GTP (MESH:D006160), quinolinium compounds (MESH:D011806), agar (MESH:D000362), glycan (MESH:D011134), lipid II (MESH:C069249), carbapenem (MESH:D015780), PC190723 (MESH:C531944), 3-MBA (MESH:C025159), PAbetaN (MESH:C419365), kanamycin (MESH:D007612)
- **Species:** Homo sapiens (human, species) [taxon 9606], Caulobacter vibrioides (species) [taxon 155892], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Staphylococcus aureus (species) [taxon 1280], Acinetobacter baumannii (species) [taxon 470], Bacillus subtilis (species) [taxon 1423], Escherichia coli (E. coli, species) [taxon 562], aureus [taxon 46170], Enterobacterales (order) [taxon 91347]
- **Mutations:** R153D, G226, N236Y, G195, A to T at nucleotide 812, V208A, N263K, guanine deletion in position 131, V208, G226V, M206V, M269I, G92D, E289G, Q221L, M206, T180A, 1342 bp insertion at position 495, N263, N263Y, G196, Q211L, F145L, M206F, C with 0, A246T, G195A, Phenylalanine-Arginine, G196A
- **Cell lines:** FZ95 — Mus musculus (Mouse), Hybridoma (CVCL_XY22), ts — Mus musculus (Mouse), Hybridoma (CVCL_A8EG), N43 — Mus musculus (Mouse), Transformed cell line (CVCL_A0SJ), ftsZ84 — Homo sapiens (Human), Oligodendroglioma, Cancer cell line (CVCL_C6J0), WM1074 — Homo sapiens (Human), Transformed cell line (CVCL_7338), LS17 — Homo sapiens (Human), Neuroblastoma, Cancer cell line (CVCL_2105), WM5188 — Homo sapiens (Human), Melanoma, Cancer cell line (CVCL_C281)

## Full text

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## Figures

12 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12937226/full.md

## References

50 references — full list in the complete paper: https://tomesphere.com/paper/PMC12937226/full.md

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Source: https://tomesphere.com/paper/PMC12937226