# GPR3 is an immediate-early gene-like GPCR regulating CREB-dependent neuronal differentiation

**Authors:** Shigeru Tanaka, Fumiaki Ikawa, Hiroko Shiraki, Kana Harada, Izumi Hide, Norio Sakai

PMC · DOI: 10.1016/j.isci.2026.114944 · iScience · 2026-02-07

## TL;DR

GPR3 is a GPCR that acts like an immediate-early gene, helping regulate neuronal differentiation through CREB-dependent signaling.

## Contribution

GPR3 is identified as an immediate-early gene-like GPCR that amplifies cAMP-CREB signaling during neuronal differentiation.

## Key findings

- Gpr3 is rapidly induced by NGF and cAMP in PC12 cells with biphasic activation.
- Early Gpr3 induction enhances Nr4a1–3 and Synapsin1 transcription via CREB signaling.
- Gpr3 deletion reduces Nr4a1–3 and Syn1 expression in primary cortical neurons.

## Abstract

GPR3 is a constitutively active Gs-coupled receptor whose transcriptional regulation during neuronal differentiation has remained unclear. Here, we identify Gpr3 as an immediate-early gene-like transcript rapidly induced by nerve growth factor (NGF) and cAMP signaling in PC12 cells, exhibiting biphasic activation captured by native elongating transcript-cap analysis of gene expression (NET-CAGE) at a core promoter ∼200 bp upstream of the transcription start site (TSS). Five cAMP response elements (CREs) within the 1-kb regulatory region cooperatively mediated stimulus-responsive transcription, with p-CREB enrichment selectively occurring at the proximal −34 CRE. Early Gpr3 induction enhanced delayed Nr4a1–3 expression and promoted Synapsin1 (Syn1) transcription through an Nr4a1-dependent mechanism. In primary cortical neurons, Gpr3 deletion diminished the developmental upregulation of Nr4a1–3 and Syn1 and reduced SYN1-positive vesicle density. These findings indicate GPR3 as an activity-dependent cAMP amplifier that couples early CREB activation to transcriptional programs governing NR4A signaling and presynaptic maturation during neuronal differentiation.

•GPR3 is a unique GPCR exhibiting immediate-early gene-like biphasic induction•Proximal CREs mediate rapid Gpr3 transcription through stimulus-dependent CREB binding•Early Gpr3 induction reinforces cAMP-CREB signaling to enhance Nr4a1–3 transcription•NR4A1 mediates GPR3-dependent Synapsin1 expression and presynaptic development

GPR3 is a unique GPCR exhibiting immediate-early gene-like biphasic induction

Proximal CREs mediate rapid Gpr3 transcription through stimulus-dependent CREB binding

Early Gpr3 induction reinforces cAMP-CREB signaling to enhance Nr4a1–3 transcription

NR4A1 mediates GPR3-dependent Synapsin1 expression and presynaptic development

Biological sciences; molecular neuroscience; systems neuroscience; cellular neuroscience

## Linked entities

- **Genes:** GPR3 (G protein-coupled receptor 3) [NCBI Gene 2827], NR4A1 (nuclear receptor subfamily 4 group A member 1) [NCBI Gene 3164], SYN1 (synapsin I) [NCBI Gene 100685486], SYN1 (synapsin I) [NCBI Gene 6853]
- **Proteins:** CREB1 (cAMP responsive element binding protein 1), NR4A1 (nuclear receptor subfamily 4 group A member 1), SYN1 (synapsin I)
- **Chemicals:** NGF (PubChem CID 60160600), cAMP (PubChem CID 6076)

## Full-text entities

- **Genes:** Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 24383] {aka BARS-38, Gapd}, Syn1 (synapsin I) [NCBI Gene 20964] {aka Syn-1, Syn1-S}, Bsn (bassoon) [NCBI Gene 12217], Syn1 (synapsin I) [NCBI Gene 24949], Gpr3 (G-protein coupled receptor 3) [NCBI Gene 14748] {aka Gpcr20, Gpcr21, Gpcr3}, Actb (actin, beta) [NCBI Gene 81822] {aka Actx}, Tas2r134 (taste receptor, type 2, member 134) [NCBI Gene 295589] {aka GPCR, T2R134, T2R23, T2R34}, Camp (cathelicidin antimicrobial peptide) [NCBI Gene 316010] {aka CRAMP}, Syn2 (synapsin II) [NCBI Gene 29179], Fos (Fos proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 314322] {aka c-fos}, Cacna1b (calcium channel, voltage-dependent, N type, alpha 1B subunit) [NCBI Gene 12287] {aka BIII, Cav2.2, Cchn1a, alpha(1B)}, Nr4a3 (nuclear receptor subfamily 4, group A, member 3) [NCBI Gene 18124] {aka CHN, CSMF, MINOR, NOR-1, Nor1, TEC}, Nr4a2 (nuclear receptor subfamily 4, group A, member 2) [NCBI Gene 18227] {aka HZF-3, NOT, Nurr1, RNR-1, TINOR, TINUR}, Nr4a2 (nuclear receptor subfamily 4, group A, member 2) [NCBI Gene 54278] {aka Nurr1, RNR1}, Creb1 (cAMP responsive element binding protein 1) [NCBI Gene 81646] {aka Creb}, Nr4a1 (nuclear receptor subfamily 4, group A, member 1) [NCBI Gene 15370] {aka GFRP1, Gfrp, Hbr-1, Hbr1, Hmr, N10}, Srf (serum response factor) [NCBI Gene 501099] {aka RGD1559787}, Tubb3 (tubulin, beta 3 class III) [NCBI Gene 22152] {aka 3200002H15Rik, M(beta)3, M(beta)6}, Stx12 (syntaxin 12) [NCBI Gene 65033] {aka Syn13}, Nol3 (nucleolar protein 3) [NCBI Gene 85383] {aka Arc}, Ngf (nerve growth factor) [NCBI Gene 310738] {aka Ngfb, beta-NGF}, Ngf (nerve growth factor) [NCBI Gene 18049] {aka Ngfb, beta-NGF}, Syn3 (synapsin III) [NCBI Gene 29130], Bdnf (brain-derived neurotrophic factor) [NCBI Gene 24225], Glul (glutamate-ammonia ligase) [NCBI Gene 24957] {aka Glns}, Gast (gastrin) [NCBI Gene 14459] {aka GAS}, glyceraldehyde-3-phosphate dehydrogenase [NCBI Gene 108351137], Rxfp2 (relaxin family peptide receptor 2) [NCBI Gene 363866] {aka Gpcr, Lgr8}, Junb (JunB proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 24517], Cgn (cingulin) [NCBI Gene 310655], Tub (TUB bipartite transcription factor) [NCBI Gene 25609], Nr4a1 (nuclear receptor subfamily 4, group A, member 1) [NCBI Gene 79240] {aka HMR, Ngfi-b, Nur77}, Cacna1b (calcium voltage-gated channel subunit alpha1 B) [NCBI Gene 257648] {aka BIII}, Gpr3 (G protein-coupled receptor 3) [NCBI Gene 266769] {aka Gpcr3}, Creb1 (cAMP responsive element binding protein 1) [NCBI Gene 12912] {aka 2310001E10Rik, 3526402H21Rik, Creb, Creb-1}, Jun (Jun proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 24516], Actb (actin, beta) [NCBI Gene 11461] {aka Actx, E430023M04Rik, beta-actin}, Crebbp (CREB binding lysine acetyltransferase) [NCBI Gene 54244] {aka CBP, RSTS, RTS}, Nr4a3 (nuclear receptor subfamily 4, group A, member 3) [NCBI Gene 58853] {aka NOR-2}, Tub (TUB bipartite transcription factor) [NCBI Gene 22141] {aka rd5}, Camk4 (calcium/calmodulin-dependent protein kinase IV) [NCBI Gene 25050] {aka Ccdpk, RATCCDPK}
- **Diseases:** autism spectrum disorder (MESH:D000067877), cognitive dysfunction (MESH:D003072), neurological disorders (MESH:D009461), pheochromocytoma (MESH:D010673)
- **Chemicals:** Triton X-100 (MESH:D017830), streptomycin (MESH:D013307), Alexa Fluor 488 (MESH:C000711379), polyacrylamide (MESH:C016679), polyethylenimine (MESH:D011094), PMA (MESH:D013755), Forskolin (MESH:D005576), Ionomycin (MESH:D015759), penicillin (MESH:D010406), B-27 (-), NaCl (MESH:D012965), formaldehyde (MESH:D005557), GlutaMAX (MESH:C054122), DAPI (MESH:C007293), calcium (MESH:D002118), KCl (MESH:D011189), Tween 20 (MESH:D011136), dithiothreitol (MESH:D004229), SDS (MESH:D012967), PVDF (MESH:C024865), PFA (MESH:C003043), water (MESH:D014867), CO2 (MESH:D002245)
- **Species:** Homo sapiens (human, species) [taxon 9606], Rattus norvegicus (brown rat, species) [taxon 10116], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** C57BL/6J — Mus musculus (Mouse), Transformed cell line (CVCL_C0MW), PC12 — Rattus norvegicus (Rat), Rat adrenal gland pheochromocytoma, Cancer cell line (CVCL_0481)

## Full text

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## Figures

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## References

45 references — full list in the complete paper: https://tomesphere.com/paper/PMC12936847/full.md

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Source: https://tomesphere.com/paper/PMC12936847