# Bipolar CD4-targeted dual-DARPin-55/57 lipid nanoparticle enables efficient CRISPR/Cas-mediated HIV-1 DNA excision and reactivation blockade in latent CD4 T cell lines

**Authors:** Subhra Mandal, Abdul Rasheed Baloch, Xinxu Yuan, Jackson Chen, A. Sami Saribas, Yuanjun Zhu, Danmeng Zhang, Dabbu Jaijyan, Jian Xu, Reafa Hossain, Ian Sisto, Hong Wang, Xiaofeng Yang, Qingsheng Li, Wenhui Hu

PMC · DOI: 10.1016/j.mtbio.2026.102939 · Materials Today Bio · 2026-02-16

## TL;DR

A new targeted delivery system uses lipid nanoparticles to efficiently remove HIV-1 DNA from infected cells and prevent its reactivation.

## Contribution

A dual-DARPin-LNP platform enables precise CRISPR/Cas9 delivery to CD4 T cells for HIV-1 proviral excision and reactivation blockade.

## Key findings

- Dual-DARPin-LNP co-delivered spCas9 mRNA and sgRNAs to excise HIV-1 proviral DNA in latent cell lines.
- Provirial excision blocked HIV-1 reactivation after stimulation with latency-reversing agents.
- LNPs remained stable for over a year at 4 °C, preserving mRNA integrity.

## Abstract

The persistence of HIV-1 latent reservoirs remains the principal barrier to a cure, as viral rebound occurs upon interruption of antiretroviral therapy. CRISPR/Cas genome editing offers a promising strategy to excise proviruses from host genome; however, the absence of a targeted and clinically viable delivery platform has hindered its translational application. Here, we report a chemistry-driven, CD4-targeted lipid nanoparticle (LNP) delivery platform employing a unique bipolar conjugation strategy to decorate dual CD4-targeted Designed Ankyrin Repeat Proteins (DARPins-55 and -57) on LNP (dual-DARPin-LNP). The N- and C-terminally modified DARPin-55/57 was thiolated stepwise, then bipolar maleimide-thiol coupling conjugated the thiolates to the maleimide-functionalized LNP surface. This coupling strategy ensured DARPin proper orientation on the LNP surface for efficient uptake by resting CD4 T cells. This dual-DARPin-LNP system was engineered for selective and efficient co-delivery of spCas9-GFP mRNA (Sp9m) and HIV-1-specific single-guide RNAs (sgRNAs) targeting LTR and Gag (LGsg) into HIV-1 latently infected CD4 T cells. In widely used HIV-1 latency models with defined proviral modifications (J-Lat 10.6 and 2D10 cell lines), dual-DARPin-LNP loaded with Sp9m/LGsg efficiently excised integrated HIV-1 proviral DNA, as confirmed by standard PCR genotyping, absolute digital PCR quantification, confocal microscopy, and flow cytometry. Importantly, proviral excision functionally blocked HIV-1 reactivation following stimulation with latency-reversing agents suberoylanilide hydroxamic acid (SAHA) and TNFα. Together, these findings establish a modular, non-viral, receptor-guided delivery platform for CD4 T cell targeting and provide proof-of-concept for precise HIV-1 DNA excision and reactivation blockade in established latency models. This new strategy represents a step toward next-generation curative interventions against persistent HIV-1 infection.

Image 1

•First dual-DARPin LNP with orientation-specific surface anchoring for CD4 targeting.•Selectively delivers cargo to resting CD4 T cells via bipolar DARPin conjugation.•Co-delivery of spCas9 mRNA and LTR1/GagD sgRNAs ensures efficient editing.•Cold-chain-stable LNPs preserve mRNA integrity for over one year at 4 °C.•Effective proviral HIV-1 excision prevents reactivation in latent reservoirs.

First dual-DARPin LNP with orientation-specific surface anchoring for CD4 targeting.

Selectively delivers cargo to resting CD4 T cells via bipolar DARPin conjugation.

Co-delivery of spCas9 mRNA and LTR1/GagD sgRNAs ensures efficient editing.

Cold-chain-stable LNPs preserve mRNA integrity for over one year at 4 °C.

Effective proviral HIV-1 excision prevents reactivation in latent reservoirs.

## Linked entities

- **Genes:** ltr (loiterer) [NCBI Gene 10216629], gag (Pr55(Gag)) [NCBI Gene 155030]
- **Proteins:** CD4 (CD4 molecule), sahA (AdoHyc hydrolase), TNF (tumor necrosis factor)
- **Chemicals:** suberoylanilide hydroxamic acid (PubChem CID 5311)

## Full-text entities

- **Genes:** FCGR2A (Fc gamma receptor IIa) [NCBI Gene 2212] {aka CD32, CD32A, CDw32, FCG2, FCGR2, FCGR2A1}, NUSAP1 (nucleolar and spindle associated protein 1) [NCBI Gene 51203] {aka ANKT, BM037, LNP, NUSAP, PRO0310p1, Q0310}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, CD19 (CD19 molecule) [NCBI Gene 930] {aka B4, CVID3}, FCGR3A (Fc gamma receptor IIIa) [NCBI Gene 2214] {aka CD16-II, CD16A, FCG3, FCGR3, FCRIIIA, FcGRIIIA}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, ITIH4 (inter-alpha-trypsin inhibitor heavy chain 4) [NCBI Gene 3700] {aka GP120, H4P, IHRP, ITI-HC4, ITIHL1, PK-120}, gag (Pr55(Gag)) [NCBI Gene 155030], SP9 (Sp9 transcription factor) [NCBI Gene 100131390] {aka ZNF990}, CCR5 (C-C motif chemokine receptor 5) [NCBI Gene 1234] {aka CC-CKR-5, CCCKR5, CCR-5, CD195, CKR-5, CKR5}, SP6 (Sp6 transcription factor) [NCBI Gene 80320] {aka AI1K, EPFN, EPIPROFIN, KLF14}, BLNK (B cell linker) [NCBI Gene 29760] {aka AGM4, BASH, BLNK-S, LY57, SLP-65, SLP65}, POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, gag-pol (Gag-Pol) [NCBI Gene 155348], SEC16A (SEC16 homolog A, endoplasmic reticulum export factor) [NCBI Gene 9919] {aka KIAA0310, SEC16L, p250}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}
- **Diseases:** HIV-1 (MESH:D015658), cytotoxicity (MESH:D064420), cardiovascular diseases (MESH:D002318), neurocognitive disorders (MESH:D019965), infected (MESH:D007239), COVID-19 (MESH:D000086382), AIDS (MESH:D000163), cancer (MESH:D009369)
- **Chemicals:** YT (MESH:C081989), Cy5 (MESH:C085321), poly(A) (MESH:D011061), DSPE-PEG(2000) (MESH:C519184), UTP (MESH:D014544), myristic acid (MESH:D019814), PBS (MESH:D007854), heparin (MESH:D006493), paraformaldehyde (MESH:C003043), cysteine (MESH:D003545), lipid (MESH:D008055), Agarose (MESH:D012685), N-tert-butylhydroxylamine (MESH:C072771), Maleimide (MESH:C043592), L-glutamine (MESH:D005973), IPTG (MESH:D007544), bicinchoninic acid (MESH:C047117), serine (MESH:D012694), sulfhydryls (MESH:D013438), peroxides (MESH:D010545), DSPE (MESH:C038089), pseudouridine (MESH:D011560), N1-methyl-pseudouridine (MESH:C013608), sodium citrate (MESH:D000077559), SAHA (MESH:D000077337), glycerol (MESH:D005990), penicillin (MESH:D010406), Cy7 (-), ethanol (MESH:D000431), Cholesterol (MESH:D002784), kanamycin (MESH:D007612), Glycine (MESH:D005998), aldehydes (MESH:D000447), SDS (MESH:D012967), stearic acid (MESH:C031183), 2-iminothiolane (MESH:C005905), imidazole (MESH:C029899), Triton X-100 (MESH:D017830), Coomassie Brilliant Blue (MESH:C004692), streptomycin (MESH:D013307), carbon (MESH:D002244), FITC (MESH:D016650), Ni (MESH:D009532), His (MESH:D006639), EDTA (MESH:D004492), 1,2-Distearoyl-sn-glycero-3-phosphocholine (MESH:C010942), 1,2-Dimyristoyl-rac-glycero-3-methoxypolyethylene glycol-2000 (MESH:C000626005), thioether (MESH:D013440), SM-102 (MESH:C000712867), m7G (MESH:C016578), trypan blue (MESH:D014343), NaCl (MESH:D012965)
- **Species:** Homo sapiens (human, species) [taxon 9606], Human immunodeficiency virus 1 (no rank) [taxon 11676], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** DR — Homo sapiens (Human), Transformed cell line (CVCL_B3I9), SM-102 — Homo sapiens (Human), Lung small cell carcinoma, Cancer cell line (CVCL_7004), BL21(DE3)pLysS — Mus musculus (Mouse), Hybridoma (CVCL_B7HM), Sp9m — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_C7RG), DH5alpha — Drosophila hydei (Fruit fly), Spontaneously immortalized cell line (CVCL_Z531), Sp9 — Sus scrofa (Pig), Porcine lymphoma, Cancer cell line (CVCL_ZJ36), 2D10 — Mus musculus (Mouse), Hybridoma (CVCL_A6MF), J-Lat 10.6 — Homo sapiens (Human), Childhood T acute lymphoblastic leukemia, Cancer cell line (CVCL_8281), J-Lat — Homo sapiens (Human), Childhood T acute lymphoblastic leukemia, Cancer cell line (CVCL_8280)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12936689/full.md

## References

112 references — full list in the complete paper: https://tomesphere.com/paper/PMC12936689/full.md

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Source: https://tomesphere.com/paper/PMC12936689