# Epigenetic regulation in type II diabetes: linking molecular mechanisms to clinical management

**Authors:** Maryam Chaudhry, Said Sif

PMC · DOI: 10.1007/s40200-025-01831-1 · Journal of Diabetes and Metabolic Disorders · 2026-02-25

## TL;DR

This paper explores how epigenetic changes contribute to type II diabetes and how targeting these changes could lead to better treatments and prevention.

## Contribution

The paper highlights novel epigenetic mechanisms and their potential as therapeutic targets for type II diabetes.

## Key findings

- Epigenetic modifications like DNA methylation and miRNA expression impair insulin sensitivity and β-cell function.
- Transgenerational epigenetic inheritance links parental metabolic status to offspring T2DM risk.
- Epigenetic modifiers such as DNMT and HDAC inhibitors show promise in reversing T2DM-related gene expression.

## Abstract

Type II diabetes mellitus (T2DM) is a multidimensional metabolic disorder driven by insulin resistance, chronic inflammation and β-cell dysfunction. Emerging evidence shows that epigenetic mechanisms i.e., DNA methylation, histone acetylation and noncoding RNAs, form a key nexus between genetic predisposition and environmental factors including diet, oxidative stress and obesity. These inheritable yet reversible modifications shape transcriptional control of key genes involved in inflammatory signalling, glucose metabolism and insulin secretion. Altered methylation of PDX1 and GLP-1R genes, overexpression of histone deacetylases, impairment of miRNA expression (e.g., miR-21, miR-146a) and lncRNAs (e.g., MALAT) cumulatively impair insulin sensitivity and β-cell identity. In addition, transgenerational epigenetic inheritance reveals how parental nutrition choices and metabolic status can predispose offspring to metabolic memory of T2DM risk. Emerging evidence highlights the promise of targeting epigenetic modifiers e.g., DNMT, HDAC inhibitors and miRNA-based strategies to reverse the abnormalities and regain normal gene expression and metabolic balance. Complementarily, the Wnt/ β-catenin and GLP-1 signalling pathways are key interfaces of epigenetic modulation of β-cell function. Understanding these mechanisms is a gateway for precision medicine that goes beyond glycaemic control in the direction of disease modification and prevention. Integrating epigenetic profiling into clinical management can redefine patients care therapies covering both molecular and heritable dimensions of T2DM.

## Linked entities

- **Genes:** PDX1 (pancreatic and duodenal homeobox 1) [NCBI Gene 3651], GLP1R (glucagon like peptide 1 receptor) [NCBI Gene 2740]
- **Diseases:** type II diabetes mellitus (MONDO:0005148), T2DM (MONDO:0005148)

## Full-text entities

- **Genes:** LIPE (lipase E, hormone sensitive type) [NCBI Gene 3991] {aka AOMS4, FPLD6, HSL, LHS, REH}, MIR30D (microRNA 30d) [NCBI Gene 407033] {aka MIRN30D, mir-30d}, LILRB1 (leukocyte immunoglobulin like receptor B1) [NCBI Gene 10859] {aka CD85J, ILT-2, ILT2, LIR-1, LIR1, MIR-7}, GH1 (growth hormone 1) [NCBI Gene 2688] {aka GH, GH-N, GHB5, GHN, IGHD1A, IGHD1B}, TMPRSS11D (transmembrane serine protease 11D) [NCBI Gene 9407] {aka ASP, HAT}, PTK2B (protein tyrosine kinase 2 beta) [NCBI Gene 2185] {aka CADTK, CAKB, FADK2, FAK2, PKB, PTK}, BTRC (beta-transducin repeat containing E3 ubiquitin protein ligase) [NCBI Gene 8945] {aka BETA-TRCP, FBW1A, FBXW1, FBXW1A, FWD1, bTrCP}, DNMT1 (DNA methyltransferase 1) [NCBI Gene 1786] {aka ADCADN, AIM, CXXC9, DNMT, HSN1E, MCMT}, LEP (leptin) [NCBI Gene 3952] {aka LEPD, OB, OBS}, MIR146A (microRNA 146a) [NCBI Gene 406938] {aka MIRN146, MIRN146A, miR-146a, miRNA146A}, MAD1L1 (mitotic arrest deficient 1 like 1) [NCBI Gene 8379] {aka MAD1, MVA7, PIG9, TP53I9, TXBP181}, GSK3B (glycogen synthase kinase 3 beta) [NCBI Gene 2932], PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, RELA (RELA proto-oncogene, NF-kB subunit) [NCBI Gene 5970] {aka AIF3BL3, CMCU, NFKB3, p65}, MIR124-1 (microRNA 124-1) [NCBI Gene 406907] {aka MIR124A, MIR124A1, MIRN124-1, MIRN124A1, mir-124-1}, Hdac9 (histone deacetylase 9) [NCBI Gene 79221] {aka D030072B18Rik, HD7B, HD9, HDRP, Hdac7b, Mitr}, MIR21 (microRNA 21) [NCBI Gene 406991] {aka MIRN21, hsa-mir-21, miR-21, miRNA21}, ADRA2B (adrenoceptor alpha 2B) [NCBI Gene 151] {aka ADRA2L1, ADRA2RL1, ADRARL1, ALPHA2BAR, FAME2, alpha-2BAR}, GAD1 (glutamate decarboxylase 1) [NCBI Gene 2571] {aka CPSQ1, DEE89, GAD, GAD-67, SCP}, CISH (cytokine inducible SH2 containing protein) [NCBI Gene 1154] {aka BACTS2, CIS, CIS-1, G18, SOCS}, HDAC9 (histone deacetylase 9) [NCBI Gene 9734] {aka HD7, HD7b, HD9, HDAC, HDAC7B, HDAC9B}, SLC2A4 (solute carrier family 2 member 4) [NCBI Gene 6517] {aka GLUT4}, SST (somatostatin) [NCBI Gene 6750] {aka SMST, SST1}, CREB1 (cAMP responsive element binding protein 1) [NCBI Gene 1385] {aka CREB, CREB-1}, CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, SLC17A5 (solute carrier family 17 member 5) [NCBI Gene 26503] {aka AST, ISSD, NSD, SD, SIALIN, SIASD}, BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596] {aka Bcl-2, PPP1R50}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, PTEN (phosphatase and tensin homolog) [NCBI Gene 5728] {aka 10q23del, BZS, CWS1, DEC, GLM2, MHAM}, DNMT3B (DNA methyltransferase 3 beta) [NCBI Gene 1789] {aka FSHD4, ICF, ICF1, M.HsaIIIB}, IRS1 (insulin receptor substrate 1) [NCBI Gene 3667] {aka HIRS-1}, PDX1 (pancreatic and duodenal homeobox 1) [NCBI Gene 3651] {aka GSF, IDX-1, IPF1, IUF1, MODY4, PAGEN1}, DKK1 (dickkopf Wnt signaling pathway inhibitor 1) [NCBI Gene 22943] {aka DKK-1, SK}, DNMT3A (DNA methyltransferase 3 alpha) [NCBI Gene 1788] {aka DNMT3A2, HESJAS, M.HsaIIIA, TBRS}, ADIPOQ (adiponectin, C1Q and collagen domain containing) [NCBI Gene 9370] {aka ACDC, ACRP30, ADIPQTL1, ADPN, APM-1, APM1}, RAP1A (RAP1A, member of RAS oncogene family) [NCBI Gene 5906] {aka C21KG, G-22K, KREV-1, KREV1, RAP1, SMGP21}, PAX4 (paired box 4) [NCBI Gene 5078] {aka KPD, MODY9}, REN (renin) [NCBI Gene 5972] {aka ADTKD4, HNFJ2, RTD}, MAFA (MAF bZIP transcription factor A) [NCBI Gene 389692] {aka INSDM, RIPE3b1, hMafA}, ITLN1 (intelectin 1) [NCBI Gene 55600] {aka HL-1, HL1, INTL, ITLN, LFR, hIntL}, MIR375 (microRNA 375) [NCBI Gene 494324] {aka MIRN375, hsa-mir-375, miRNA375, mir-375}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, PDCD4 (programmed cell death 4) [NCBI Gene 27250] {aka H731}, IGF2 (insulin like growth factor 2) [NCBI Gene 3481] {aka C11orf43, GRDF, IGF-II, PP9974, SRS3}, INSR (insulin receptor) [NCBI Gene 3643] {aka CD220, HHF5}, Tet2 (tet methylcytosine dioxygenase 2) [NCBI Gene 214133] {aka Ayu17-449, E130014J05Rik, mKIAA1546}, PPARGC1A (PPARG coactivator 1 alpha) [NCBI Gene 10891] {aka LEM6, PGC-1(alpha), PGC-1alpha, PGC-1v, PGC1, PGC1A}, MALAT1 (metastasis associated lung adenocarcinoma transcript 1) [NCBI Gene 378938] {aka HCN, LINC00047, NCRNA00047, NEAT2, PRO2853, miPEP-52}, ARX (aristaless related homeobox) [NCBI Gene 170302] {aka CT121, EIEE1, ISSX, MRX29, MRX32, MRX33}, TUBB (tubulin beta class I) [NCBI Gene 203068] {aka CDCBM6, CSCSC1, M40, OK/SW-cl.56, TUBB1, TUBB5}, INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}, IAPP (islet amyloid polypeptide) [NCBI Gene 3375] {aka DAP, IAP}, GLP1R (glucagon like peptide 1 receptor) [NCBI Gene 2740] {aka GLP-1, GLP-1-R, GLP-1R}, CAMK4 (calcium/calmodulin dependent protein kinase IV) [NCBI Gene 814] {aka CaMK IV, CaMK-GR, CaMKIV, caMK}, MIR200C (microRNA 200c) [NCBI Gene 406985] {aka MIRN200C, mir-200c}, GCG (glucagon) [NCBI Gene 2641] {aka GLP-1, GLP1, GLP2, GRPP}, RAPGEF4 (Rap guanine nucleotide exchange factor 4) [NCBI Gene 11069] {aka CAMP-GEFII, CGEF2, EPAC, EPAC 2, EPAC2, Nbla00496}, HLA-DRB4 (major histocompatibility complex, class II, DR beta 4) [NCBI Gene 3126] {aka DR4, DRB4, HLA-DR4B, HLA-DRB, HLA-DRB4*}, Mir26a-1 (microRNA 26a-1) [NCBI Gene 387218] {aka Mirn26a, Mirn26a-1, miR-26a, mir-26a-1}
- **Diseases:** foot ulcers (MESH:D016523), DKD (MESH:D003928), glucose tolerance (MESH:D018149), cell impairment (MESH:D006528), Chronic hyperglycaemia (MESH:D002908), skeletal/bony impairment (MESH:D018213), OHS (MESH:D010845), coma (MESH:D003128), neuropathy (MESH:D009422), -Cell (MESH:D002292), nephropathy (MESH:D007674), depression (MESH:D003866), adiposity (MESH:D018205), Type II diabetes mellitus (MESH:D003924), OSA (MESH:D020181), inflammatory cytokines (MESH:D000080424), PAD (MESH:D058729), TIAs (MESH:D002546), DKA (MESH:D016883), CAD (MESH:D003324), T1D (MESH:D003922), amyloid (MESH:C000718787), constipation (MESH:D003248), Liver (MESH:D017093), dysfunction (MESH:D006331), autoimmune beta-cell destruction (MESH:D007340), tingling (MESH:D010292), ischemic damage (MESH:D017202), ESKD (MESH:D007676), orthostatic hypotension (MESH:D007024), myocardial infarction (MESH:D009203), cardiovascular and metabolic diseases (MESH:D002318), postprandial (MESH:D007003), Diabetic Neuropathy (MESH:D003929), infection (MESH:D007239), Insulin Resistance (MESH:D007333), acidosis (MESH:D000138), dehydration (MESH:D003681), polydipsia (MESH:D059606), numbness (MESH:D006987), vascular damage (MESH:D057772), weight loss (MESH:D015431), microvascular damage (MESH:D017566), Albuminuria (MESH:D000419), metabolic and vascular complications (MESH:D020739), ASCVD (MESH:D050197), HHS (MESH:D006944), Hypertension (MESH:D006973), hypothyroidism (MESH:D007037), intrauterine malnutrition (MESH:D044342), death (MESH:D003643), proteinuria (MESH:D011507), Cushing's syndrome (MESH:D003480), metabolic dysregulation (MESH:D021081), medullary thyroid carcinoma (MESH:C536914), Metabolic dysfunctions (MESH:D008659), systemic disease (MESH:D034721), vomiting (MESH:D014839), hypoxia (MESH:D000860), Hashimoto's thyroiditis (MESH:D050031)
- **Chemicals:** dopamine (MESH:D004298), BG (MESH:C064976), ROS (MESH:D017382), calcium (MESH:D002118), Glucose (MESH:D005947), polyphenols (MESH:D059808), ATP (MESH:D000255), lipid (MESH:D008055), catecholamines (MESH:D002395), carbohydrates (MESH:D002241), bicarbonates (MESH:D001639), phosphatidylinositol-3,4,5-trisphosphate (MESH:C060974), acetoacetate (MESH:C016635), curcumin (MESH:D003474), Ca2+ (-), sodium (MESH:D012964), TG (MESH:D013866), potassium (MESH:D011188), norepinephrine (MESH:D009638), blood glucose (MESH:D001786), cholesterol (MESH:D002784), ketone bodies (MESH:D007657), metformin (MESH:D008687), sulfonylureas (MESH:D013453), Exenatide (MESH:D000077270), Free fatty acids (MESH:D005230), glycogen (MESH:D006003), cortisol (MESH:D006854), PIP2 (MESH:D019269), epinephrine (MESH:D004837), Triglycerides (MESH:D014280), ketone (MESH:D007659), aldosterone (MESH:D000450), fat (MESH:D005223), beta-hydroxybutyrate (MESH:D020155), lixisenatide (MESH:C479460)
- **Species:** Rattus norvegicus (brown rat, species) [taxon 10116], Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** S108495212200266X, S221287781731102X, S096007601000018X, P13K, S135094621500066X

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12936327/full.md

## References

64 references — full list in the complete paper: https://tomesphere.com/paper/PMC12936327/full.md

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Source: https://tomesphere.com/paper/PMC12936327