# The N-Myc MB0-MBI region interacts specifically and dynamically with the N-lobe of Aurora kinase A

**Authors:** Johanna Hultman, Vivian Morad, Eliane Tanner, Tristan M. G. Kenney, Zuzanna Pietras, Lalit Pramod Khare, Dean Derbyshire, Diana Resetca, Cheryl H. Arrowsmith, Daniel Aili, Simon Ekström, Linda Z. Penn, Björn Wallner, Alexandra Ahlner, Maria Sunnerhagen

PMC · DOI: 10.1038/s41467-026-69725-1 · Nature Communications · 2026-02-24

## TL;DR

The study shows how the disordered N-Myc protein interacts with Aurora kinase A to promote its activation, offering a potential target for treating neuroendocrine tumors.

## Contribution

The paper reveals a dynamic and inhibitable interaction between N-Myc and Aurora A's N-lobe, governed by aromatic clusters in conserved motifs.

## Key findings

- N-Myc interacts with Aurora A's N-lobe through multiple binding sites in a dynamic mode.
- Aromatic clusters in the MB0 and MBI motifs of N-Myc are critical for the interaction.
- The small-molecule AurkinA can inhibit the N-Myc–Aurora A interaction, suggesting therapeutic potential.

## Abstract

The intrinsically disordered MYC proteins are master regulators of cellular growth and function, but when deregulated they become cancer drivers. MYC-protein interactions are key to oncogenesis, and while disrupting such interactions would be of significant therapeutic benefit, the intrinsically disordered properties of MYC have dramatically hampered their characterization. Here, we apply an integrated structural biology approach to describe the structure and dynamics of the N-Myc–Aurora A complex, which is critical in neuroendocrine tumor progression. We reveal a functional interaction where multiple binding sites on N-Myc interact with the Aurora A N-lobe. The interaction is governed by aromatic clusters within the conserved MB0 and MBI motifs in N-Myc that interact with Aurora A in a dynamic binding mode that allosterically promotes kinase activation. We show that N-Myc binding to the Aurora A N-lobe can be inhibited by the small-molecule AurkinA, providing opportunity for therapeutical strategies to disrupt this interaction.

The authors reveal how the intrinsically disordered oncoprotein N-Myc dynamically interacts with Aurora kinase A in an inhibitable binding mode that allosterically promotes its activation, offering opportunities to restrict neuroendocrine tumor growth.

## Linked entities

- **Genes:** MYCN (MYCN proto-oncogene, bHLH transcription factor) [NCBI Gene 4613], MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609]
- **Proteins:** Aurora-A (hypothetical protein)
- **Diseases:** neuroendocrine tumor (MONDO:0019496)

## Full-text entities

- **Genes:** MYCN (MYCN proto-oncogene, bHLH transcription factor) [NCBI Gene 4613] {aka FGLDS1, MODED, MPAPA, MYCNsORF, MYCNsPEP, N-myc}, ABL1 (ABL proto-oncogene 1, non-receptor tyrosine kinase) [NCBI Gene 25] {aka ABL, BCR-ABL, CHDSKM, JTK7, bcr/abl, c-ABL}, TXN (thioredoxin) [NCBI Gene 7295] {aka TRDX, TRX, TRX1, TXN1, Trx80}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, SENP2 (SUMO specific peptidase 2) [NCBI Gene 59343] {aka AXAM2, SMT3IP2}, ACSM3 (acyl-CoA synthetase medium chain family member 3) [NCBI Gene 6296] {aka SA, SAH}, MYCL (MYCL proto-oncogene, bHLH transcription factor) [NCBI Gene 4610] {aka L-Myc, LMYC, MYCL1, bHLHe38}, PPA1 (inorganic pyrophosphatase 1) [NCBI Gene 5464] {aka HEL-S-66p, IOPPP, PP, PP1, SID6-8061}, PPP1R10 (protein phosphatase 1 regulatory subunit 10) [NCBI Gene 5514] {aka CAT53, FB19, PNUTS, PP1R10, R111, p99}, AURKA (aurora kinase A) [NCBI Gene 6790] {aka AIK, ARK1, AURA, BTAK, PPP1R47, STK15}, HDX (highly divergent homeobox) [NCBI Gene 139324] {aka CXorf43, D030011N01Rik}, CEP192 (centrosomal protein 192) [NCBI Gene 55125] {aka PPP1R62}, TPX2 (TPX2 microtubule nucleation factor) [NCBI Gene 22974] {aka C20orf1, C20orf2, DIL-2, DIL2, FLS353, GD:C20orf1}
- **Diseases:** Cancer (MESH:D009369), prostate cancer (MESH:D011471), melanoma (MESH:D008545), neuroblastoma (MESH:D009447), neuroendocrine tumor (MESH:D018358)
- **Chemicals:** amino acid (MESH:D000596), Ni2+-NTA (MESH:C088321), MgSO4 (MESH:D008278), nitrogen (MESH:D009584), Oxyma (MESH:C045419), urea (MESH:D014508), EDTA (MESH:D004492), His (MESH:D006639), TFA (MESH:D014269), Ser (MESH:D012694), ADP (MESH:D000244), acetonitrile (MESH:C032159), alanine (MESH:D000409), deuterium (MESH:D003903), 15N (-), MgCl2 (MESH:D015636), acetic anhydride (MESH:C031800), NaCl (MESH:D012965), spectinomycin (MESH:D000198), Prolines (MESH:D011392), DIC (MESH:D003606), formic acid (MESH:C030544), TCEP (MESH:C080938), HEPES (MESH:D006531), Glycerol (MESH:D005990), DTT (MESH:D004229), MES (MESH:C004550), CaCl2 (MESH:D002122), Tween-20 (MESH:D011136), D-biotin (MESH:D001710), H (MESH:D006859), Trp (MESH:D014364), SDS (MESH:D012967), Chloramphenicol (MESH:D002701), kanamycin (MESH:D007612), glucose (MESH:D005947), diethyl ether (MESH:D004986), GF (MESH:C053914), FA (MESH:D005492), 13C- (MESH:C000615229), Phenol (MESH:D019800), ATP (MESH:D000255), H2O (MESH:D014867), Imidazole (MESH:C029899), Piperidine (MESH:C032727), amide (MESH:D000577), ampicillin (MESH:D000667), D2O (MESH:D017666), IPTG (MESH:D007544), luciferin (MESH:D000090562), NaN3 (MESH:D019810), Cys (MESH:D003545), Peptides (MESH:D010455), DIEA (MESH:C027070), TB (MESH:D013725)
- **Species:** Homo sapiens (human, species) [taxon 9606], Escherichia coli BL21(DE3) (strain) [taxon 469008]
- **Mutations:** Y29A, T287A, F28A, F21A, Y36A, F37, C at 50, W50A, C with 0, C393A, T288, F37A, F35A, F28, F53A, T288E, C290A, 288 K, F21
- **Cell lines:** N-Myc1 — Mus musculus (Mouse), Malignant neoplasms of the mouse mammary gland, Cancer cell line (CVCL_S723), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), N-Myc1-69 — Homo sapiens (Human), Ovarian adenocarcinoma, Cancer cell line (CVCL_A8KJ), BL21(DE3) — Mus musculus (Mouse), Hybridoma (CVCL_B7HM)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12936163/full.md

## References

2 references — full list in the complete paper: https://tomesphere.com/paper/PMC12936163/full.md

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Source: https://tomesphere.com/paper/PMC12936163