# Residue-level determinants of the thermal stability of the extremophilic Ts2631 endolysin

**Authors:** Karolina Cieminska, Anna-Karina Kaczorowska, Lukasz Pawel Kozlowski, Marcin Gorniak, Olafur H. Fridjonsson, Gudmundur O. Hreggvidsson, Tadeusz Kaczorowski, Magdalena Plotka

PMC · DOI: 10.1038/s41598-026-38786-z · Scientific Reports · 2026-02-06

## TL;DR

This paper identifies specific amino acid residues that contribute to the thermal stability of a heat-resistant endolysin from a bacteriophage, offering insights for engineering more stable antimicrobial enzymes.

## Contribution

The study identifies residue-level determinants of thermal stability in the endolysin Ts2631, revealing the role of aromatic and proline residues in thermostability.

## Key findings

- Ts2631 endolysin has a melting point of up to 104.7°C, indicating high thermostability.
- Residues R20, W102, W109, P140, and W145 are critical for thermal stability and peptidoglycan binding.
- Buried aromatic residues significantly contribute to the thermophilic fold of Ts2631.

## Abstract

In the face of the growing crisis of antibiotic resistance, peptidoglycan-degrading endolysins derived from bacteriophages offer a promising alternative to traditional antimicrobials. Thermostable variants, capable of maintaining their structure and activity under extreme conditions, are of particular interest. Here, we present a comprehensive analysis of endolysin Ts2631 from bacteriophage vB_Tsc2631, which infects Thermus scotoductus in Icelandic hot springs. This type 2 amidase exhibits exceptional thermostability, with a melting point ranging from 99.8 °C to 104.7 °C, depending on the solvent.

Structural comparison with its mesophilic counterpart, T7 lysozyme, revealed shorter loops with lower B factors, suggesting reduced conformational flexibility. The Ts2631 sequence contains increased levels of tyrosine, proline, tryptophan, and arginine residues, amino acids commonly associated with thermophilic adaptation. To elucidate the contribution of individual residues, the melting temperatures (Tm) of 55 point mutants were determined. Substitutions at the catalytic Zn²⁺-coordinating residues (H30, H131, and C139) led to significant destabilization. Substitutions at positions Y60 and Y69 also reduced stability. In contrast, the disulfide bond (C80-C90) and arginine-mediated salt bridges showed limited effects. Among the aromatic and proline mutants, R20A, W102A, W109A, P140A, and W145A had significantly reduced Tm values. R20 proved critical for peptidoglycan binding, while the hidden tryptophan and proline contributed significantly to the thermophilic fold. Overall, the data indicate that buried aromatic residues play a key role in maintaining the remarkable thermal resistance of Ts2631. This suggests a future strategy to enhance the stability of mesophilic endolysins with therapeutic potential by replacing non-conserved amino acids with tryptophan or proline residues.

The online version contains supplementary material available at 10.1038/s41598-026-38786-z.

## Linked entities

- **Species:** Thermus scotoductus (taxon 37636)

## Full-text entities

- **Genes:** PGLYRP1 (peptidoglycan recognition protein 1) [NCBI Gene 8993] {aka PGLYRP, PGRP, PGRP-S, PGRPS, TAG7, TNFSF3L}, PDB [NCBI Gene 5131]
- **Chemicals:** potassium phosphate (MESH:C013216), Amino acids (MESH:D000596), EDTA (MESH:D004492), choline (MESH:D002794), TALON (MESH:C013418), glycan (MESH:D011134), aspartic acid (MESH:D001224), Arginine (MESH:D001120), Ser (MESH:D012694), DAP (MESH:C041756), NaCl (MESH:D012965), proline (MESH:D011392), D (MESH:D003903), metal (MESH:D008670), L-Ala-D-iso-Glu-m-DAP-D-Ala-D-Ala. (-), HEPES (MESH:D006531), disulfide (MESH:D004220), glycerol (MESH:D005990), zinc (MESH:D015032), K (MESH:D011188), P (MESH:D010758), salt (MESH:D012492), TCEP (MESH:C080938), HCl (MESH:D006851), glutamic acid (MESH:D018698), hydrogen (MESH:D006859), SDS (MESH:D012967), Trp (MESH:D014364), PBS (MESH:D007854), Laemmli buffer (MESH:C088816), DTT (MESH:D004229), Tricine (MESH:C100184), MES (MESH:C004550), Lys (MESH:D008239), asparagine (MESH:D001216), Q (MESH:D005973), cobalt (MESH:D003035), polystyrene (MESH:D011137), glutathione (MESH:D005978), water (MESH:D014867), tyrosine (MESH:D014443), imidazole (MESH:C029899), E (MESH:D004540), Leu (MESH:D007930), ampicillin (MESH:D000667), (NH4)2SO4 (MESH:D000645), polypropylene (MESH:D011126), W (MESH:D014414), cysteine (MESH:D003545), chloroform (MESH:D002725)
- **Species:** Thermus sp. (species) [taxon 275], Caenorhabditis elegans (species) [taxon 6239], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Pyrolobus fumarii (species) [taxon 54252], Thermus thermophilus (species) [taxon 274], Escherichia phage T7 (no rank) [taxon 10760], Thermus thermophilus HB8 (strain) [taxon 300852], Escherichia coli K-12 (strain) [taxon 83333], Homo sapiens (human, species) [taxon 9606], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Thermus scotoductus (species) [taxon 37636], Geobacillus stearothermophilus (species) [taxon 1422], Escherichia coli BL21(DE3) (strain) [taxon 469008], Escherichia coli (E. coli, species) [taxon 562], Brevibacillus (genus) [taxon 55080], Clostridium intestinale (species) [taxon 36845], Drosophila melanogaster (fruit fly, species) [taxon 7227], Apis mellifera (bee, species) [taxon 7460], Thermus parvatiensis (species) [taxon 456163]
- **Mutations:** Y60A, H30N, C139, P140, W145A, 80  C, R20A, Y69A, C with 1, W102A, 18  C, R12A, W109A, R67A, R82, Y58, 110  C, lysine to arginine, H131, P140A, H30, R18A, proline residues were substituted with alanine, R15A, R110A, R51A, A140, R64, R64A, C139S, W53A, R45A, T137K, H131N, Y58F, R82A, L72A, R20, P104A, C in 20, R51, C80A
- **Cell lines:** pET15b — Homo sapiens (Human), Pyriform fossa squamous cell carcinoma, Cancer cell line (CVCL_C756), Ts2631 — Mus musculus (Mouse), Hybridoma (CVCL_A8EG), Escherichia coli DH5alpha — Drosophila hydei (Fruit fly), Spontaneously immortalized cell line (CVCL_Z531), E. coli BL21(DE3) — Mus musculus (Mouse), Hybridoma (CVCL_B7HM)

## Full text

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## Figures

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## References

6 references — full list in the complete paper: https://tomesphere.com/paper/PMC12936114/full.md

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Source: https://tomesphere.com/paper/PMC12936114