# The emerging role of m6A methylation in prostate-related diseases: mechanisms and clinical implications

**Authors:** Qinghua Xie, Hongyan Zhao, Xuan Yang, Hongqi Zhang, Hong Liu, Jinghua Pan, Yan Li, Danping Fan, Xinrong Fan

PMC · DOI: 10.3389/fimmu.2026.1685015 · Frontiers in Immunology · 2026-02-12

## TL;DR

This paper reviews how m6A RNA methylation influences prostate diseases like prostatitis, BPH, and prostate cancer, and how targeting this process could lead to new diagnostics and treatments.

## Contribution

The paper systematically reviews the role of m6A methylation in prostate-related diseases and highlights its potential as a therapeutic and diagnostic target.

## Key findings

- m6A methylation regulates prostate disease progression through altered cell proliferation, inflammation, and immune responses.
- Dysregulation of m6A components like METTL3, FTO, and YTHDF1 contributes to prostatitis, BPH, and prostate cancer.
- m6A modifications influence immunosuppressive environments in prostate cancer by modulating immune checkpoints like PD-L1.

## Abstract

Prostate-related diseases, including prostatitis, benign prostatic hyperplasia (BPH), and prostate cancer (PCa), represent significant threats to the health of the aging male population worldwide. Despite their prevalence, the pathogenesis of prostate-related diseases has not been elucidated. Recent studies have shown that N6-methyladenosine (m6A) modification is widely involved in the progression of prostate-related diseases. In this review, we summarized recent advances in understanding the core m6A regulatory machinery comprising writers such as the methyltransferase-like 3 (METTL3)-METTL14 complex, erasers including fat mass and obesity-associated protein (FTO) and AlkB homolog 5 (ALKBH5), and readers, including the YTH domain-containing family proteins (YTHDFs), YTHDC proteins, insulin-like growth factor 2 mRNA-binding proteins (IGF2BPs), and heterogeneous nuclear ribonucleoproteins (HNRNPs). Specifically, we elucidated how dysregulation of these components drives disease progression via alterations in cellular proliferation, differentiation, inflammatory responses, and stem cell dynamics. Notably, m6A modifications help shape the immunosuppressive landscape in PCa by modulating immune checkpoint expression, cytokine networks, and immune cell infiltration, thereby critically influencing therapeutic responses to immunotherapy. Furthermore, this review highlights the emerging diagnostic potential and therapeutic viability of m6A-targeted strategies, offering valuable insights for future clinical translation in prostate-related diseases.

N6-methyladenosine (m6A) RNA methylation dynamically orchestrates prostate physiology and pathology through the coordinated actions of writers (e.g., METTL3, METTL14, and WTAP), erasers (FTO and ALKBH5), and readers (YTHDF1, YTHDF2, YTHDC1), which together regulate mRNA stability, splicing, translation, and decay. This epitranscriptomic machinery modulates key cellular processes, including proliferation, differentiation, inflammatory responses, and stemness, within the prostate gland, as illustrated by the central anatomical depiction of the human prostate. Dysregulation of m6A modification drives a pathological continuum: in prostatitis, aberrant m6A signaling exacerbates chronic inflammation via altered cytokine production and immune cell infiltration; in benign prostatic hyperplasia (BPH), it promotes stromal and epithelial hyperplasia by enhancing cell growth and suppressing apoptosis; and in prostate cancer (PCa), m6A imbalance fosters tumor progression through oncogene activation, tumor suppressor silencing, and the establishment of an immunosuppressive microenvironment, characterized by upregulated immune checkpoints (e.g., PD-L1) and impaired T-cell infiltration. Collectively, this visual narrative positions m6A methylation as a pivotal epigenetic switch across the spectrum of prostate-related diseases, highlighting its emerging potential as a source of diagnostic biomarkers and therapeutic targets in precision oncology.Diagram illustrating the role of m⁶A modification abnormalities in prostate conditions. VCAN, PTEN, and MYC/AR influence m⁶A modifications. Abnormalities lead to prostatitis, mediated by TNF-α and TGF-β, and influence factors like NF-κB and IL-6/IL-8. These contribute to benign prostatic hyperplasia (BPH) and prostate cancer (PCa) through tissue remodeling, EMT, AR, and local hypoxia, with pathways such as direct transformation, PIA lesion, and HGPIN formation. Arrows indicate the progression and impact on the human prostate.

N6-methyladenosine (m6A) RNA methylation dynamically orchestrates prostate physiology and pathology through the coordinated actions of writers (e.g., METTL3, METTL14, and WTAP), erasers (FTO and ALKBH5), and readers (YTHDF1, YTHDF2, YTHDC1), which together regulate mRNA stability, splicing, translation, and decay. This epitranscriptomic machinery modulates key cellular processes, including proliferation, differentiation, inflammatory responses, and stemness, within the prostate gland, as illustrated by the central anatomical depiction of the human prostate. Dysregulation of m6A modification drives a pathological continuum: in prostatitis, aberrant m6A signaling exacerbates chronic inflammation via altered cytokine production and immune cell infiltration; in benign prostatic hyperplasia (BPH), it promotes stromal and epithelial hyperplasia by enhancing cell growth and suppressing apoptosis; and in prostate cancer (PCa), m6A imbalance fosters tumor progression through oncogene activation, tumor suppressor silencing, and the establishment of an immunosuppressive microenvironment, characterized by upregulated immune checkpoints (e.g., PD-L1) and impaired T-cell infiltration. Collectively, this visual narrative positions m6A methylation as a pivotal epigenetic switch across the spectrum of prostate-related diseases, highlighting its emerging potential as a source of diagnostic biomarkers and therapeutic targets in precision oncology.

## Linked entities

- **Genes:** METTL3 (methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit) [NCBI Gene 56339], METTL14 (methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit) [NCBI Gene 57721], FTO (FTO alpha-ketoglutarate dependent dioxygenase) [NCBI Gene 79068], ALKBH5 (alkB homolog 5, RNA demethylase) [NCBI Gene 54890], YTHDF1 (YTH N6-methyladenosine RNA binding protein F1) [NCBI Gene 54915], YTHDF2 (YTH N6-methyladenosine RNA binding protein F2) [NCBI Gene 51441], YTHDC1 (YTH N6-methyladenosine RNA binding protein C1) [NCBI Gene 91746], VCAN (versican) [NCBI Gene 1462], PTEN (phosphatase and tensin homolog) [NCBI Gene 5728], MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609], AR (androgen receptor) [NCBI Gene 367]
- **Diseases:** prostatitis (MONDO:0005280), benign prostatic hyperplasia (BPH) (MONDO:0010811)

## Full-text entities

- **Genes:** METTL14 (methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit) [NCBI Gene 57721] {aka hMETTL14}, METTL16 (methyltransferase 16, RNA N6-adenosine) [NCBI Gene 79066] {aka METT10D}, RBM15 (RNA binding motif protein 15) [NCBI Gene 64783] {aka OTT, OTT1}, KDM4C (lysine demethylase 4C) [NCBI Gene 23081] {aka GASC1, JHDM3C, JMJD2C, TDRD14C}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, CLCN4 (Cl-/H+ antiporter 4) [NCBI Gene 1183] {aka CLC4, ClC-4, ClC-4A, MRX15, MRX49, MRXSRC}, CLIC4 (CLIC family member 4) [NCBI Gene 25932] {aka CLIC4L, H1, MTCLIC, huH1, p64H1}, IGF1R (insulin like growth factor 1 receptor) [NCBI Gene 3480] {aka CD221, IGFIR, IGFR, JTK13}, YTHDC1 (YTH N6-methyladenosine RNA binding protein C1) [NCBI Gene 91746] {aka YT521, YT521-B}, USF1 (upstream transcription factor 1) [NCBI Gene 7391] {aka FCHL, FCHL1, HYPLIP1, MLTF, MLTFI, UEF}, G3BP1 (G3BP stress granule assembly factor 1) [NCBI Gene 10146] {aka G3BP, HDH-VIII}, ZC3H13 (zinc finger CCCH-type containing 13) [NCBI Gene 23091] {aka KIAA0853, Xio}, CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}, DHX38 (DEAH-box helicase 38) [NCBI Gene 9785] {aka DDX38, PRP16, PRPF16, RP84}, METTL3 (methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit) [NCBI Gene 56339] {aka IME4, M6A, MT-A70, Spo8, hMETTL3}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, FOXO1 (forkhead box O1) [NCBI Gene 2308] {aka FKH1, FKHR, FOXO1A}, JAK1 (Janus kinase 1) [NCBI Gene 3716] {aka AIIDE, JAK1A, JAK1B, JTK3}, THBS1 (thrombospondin 1) [NCBI Gene 7057] {aka THBS, THBS-1, TSP, TSP-1, TSP1}, RBM15B (RNA binding motif protein 15B) [NCBI Gene 29890] {aka HUMAGCGB, HsOTT3, OTT3}, KLK3 (kallikrein related peptidase 3) [NCBI Gene 354] {aka APS, KLK2A1, PSA, hK3}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, IGF2BP3 (insulin like growth factor 2 mRNA binding protein 3) [NCBI Gene 10643] {aka CT98, IMP-3, IMP3, KOC, KOC1, VICKZ3}, WTAP (WT1 associated protein) [NCBI Gene 9589] {aka Mum2}, ALKBH1 (alkB homolog 1, histone H2A dioxygenase) [NCBI Gene 8846] {aka ABH, ABH1, ALKBH, alkB, hABH}, MIR21 (microRNA 21) [NCBI Gene 406991] {aka MIRN21, hsa-mir-21, miR-21, miRNA21}, FTO (FTO alpha-ketoglutarate dependent dioxygenase) [NCBI Gene 79068] {aka ALKBH9, BMIQ14, GDFD, IFEX9}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, IGF2BP2 (insulin like growth factor 2 mRNA binding protein 2) [NCBI Gene 10644] {aka IMP-2, IMP2, VICKZ2}, JPX (JPX transcript, XIST activator) [NCBI Gene 554203] {aka DCBALD06, ENOX, LINC00183, NCRNA00183}, ZFHX3 (zinc finger homeobox 3) [NCBI Gene 463] {aka ATBF1, ATBT, ATFB8, C16orf47, EIG20, SCA4}, SLTM (SAFB like transcription modulator) [NCBI Gene 79811] {aka Met}, RELA (RELA proto-oncogene, NF-kB subunit) [NCBI Gene 5970] {aka AIF3BL3, CMCU, NFKB3, p65}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, NKX3-1 (NK3 homeobox 1) [NCBI Gene 4824] {aka BAPX2, NKX3, NKX3.1, NKX3A}, IGFBP3 (insulin like growth factor binding protein 3) [NCBI Gene 3486] {aka BP-53, IBP-3, IBP3, IGFBP-3}, GOLM1 (golgi membrane protein 1) [NCBI Gene 51280] {aka C9orf155, GOLPH2, GP73, HEL46, PSEC0257, bA379P1.3}, IGF2BP1 (insulin like growth factor 2 mRNA binding protein 1) [NCBI Gene 10642] {aka CRD-BP, CRDBP, IMP-1, IMP1, VICKZ1, ZBP1}, PTK2B (protein tyrosine kinase 2 beta) [NCBI Gene 2185] {aka CADTK, CAKB, FADK2, FAK2, PKB, PTK}, SMAD3 (SMAD family member 3) [NCBI Gene 4088] {aka HSPC193, HsT17436, JV15-2, LDS1C, LDS3, MADH3}, SIAH1 (siah E3 ubiquitin protein ligase 1) [NCBI Gene 6477] {aka BURHAS, SIAH1A}, ALKBH5 (alkB homolog 5, RNA demethylase) [NCBI Gene 54890] {aka ABH5, OFOXD, OFOXD1}, MC4R (melanocortin 4 receptor) [NCBI Gene 4160] {aka BMIQ20}, PCAT1 (prostate cancer associated transcript 1) [NCBI Gene 100750225] {aka PCA1, PCAT-1, PiHL}, MBD2 (methyl-CpG binding domain protein 2) [NCBI Gene 8932] {aka DMTase, NY-CO-41}, ZEB1 (zinc finger E-box binding homeobox 1) [NCBI Gene 6935] {aka AREB6, BZP, DELTAEF1, FECD6, NIL2A, PPCD3}, HNRNPA2B1 (heterogeneous nuclear ribonucleoprotein A2/B1) [NCBI Gene 3181] {aka HNRNPA2, HNRNPB1, HNRPA2, HNRPA2B1, HNRPB1, IBMPFD2}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, EIF3A (eukaryotic translation initiation factor 3 subunit A) [NCBI Gene 8661] {aka EIF3, EIF3S10, P167, TIF32, eIF3-p170, eIF3-theta}, RBMXP1 (RBMX pseudogene 1) [NCBI Gene 3186] {aka HNRNP-G, HNRPG}, FMR1 (fragile X messenger ribonucleoprotein 1) [NCBI Gene 2332] {aka FMRP, FRAXA, POF, POF1}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142] {aka ADPRT, ADPRT 1, ADPRT1, ARTD1, PARP, PARP-1}, DDIT4 (DNA damage inducible transcript 4) [NCBI Gene 54541] {aka Dig2, REDD-1, REDD1}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, VCAN (versican) [NCBI Gene 1462] {aka CSPG2, ERVR, GHAP, PG-M, WGN, WGN1}, YTHDC2 (YTH N6-methyladenosine RNA binding protein C2) [NCBI Gene 64848] {aka CAHL, hYTHDC2}, FOXC2 (forkhead box C2) [NCBI Gene 2303] {aka FKHL14, LD, MFH-1, MFH1}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}
- **Diseases:** pelvic pain (MESH:D017699), colorectal cancer (MESH:D015179), tumorigenic (MESH:D002471), Prostate-related diseases (MESH:D011469), bone metastasis (MESH:D009362), abnormal (MESH:D000014), epilepsy (MESH:D004827), BPH (MESH:D011470), toxicity (MESH:D064420), colitis (MESH:D003092), aggressive (MESH:D010554), pulmonary fibrosis (MESH:D011658), Prostatitis (MESH:D011472), hypoxic pulmonary hypertension (MESH:D006976), sepsis (MESH:D018805), chronic (MESH:D002908), urinary diseases (MESH:D014570), hyperplasia (MESH:D006965), hepatocellular carcinoma (MESH:D006528), -related (MESH:D019973), PCa (MESH:D011471), fibrosis (MESH:D005355), glioma (MESH:D005910), Chronic inflammation (MESH:D007249), diseases (MESH:D004194), atrophy (MESH:D001284), liver fibrosis (MESH:D008103), cancers (MESH:D009369), intraductal carcinoma (MESH:D002285), lung cancer (MESH:D008175), carcinogenesis (MESH:D063646), HGPIN (MESH:D019048), PIA (MESH:D009220), hypoxic (MESH:D002534), CRPC (MESH:D064129), gastric cancer (MESH:D013274), Hypoxia (MESH:D000860), metabolic disorders (MESH:D008659)
- **Chemicals:** curcumin (MESH:D003474), Fe2+ (-), cisplatin (MESH:D002945), olaparib (MESH:C531550), lipid (MESH:D008055), taxanes (MESH:D043823), LPS (MESH:D008070), meclofenamic acid (MESH:D008469), m6A (MESH:C005955), camptothecin (MESH:D002166), Simvastatin (MESH:D019821), N6-methyladenosine (MESH:C010223), EGCG (MESH:C045651), adenosine (MESH:D000241), quercetin (MESH:D011794), S-adenosylmethionine (MESH:D012436), oxaliplatin (MESH:D000077150)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** PC3 — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_0035)

## Full text

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## Figures

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## References

119 references — full list in the complete paper: https://tomesphere.com/paper/PMC12935967/full.md

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Source: https://tomesphere.com/paper/PMC12935967