# Retrospective insights into probiotic and prebiotic interventions: associations with gut microbiota profiles and nutritional outcomes

**Authors:** Xueli He, Chaoming Chen, Lan Shen, Xiaomei Su, Hao Xie, Mengsi Yang, Wenkang Jiang

PMC · DOI: 10.3389/fnut.2026.1729480 · Frontiers in Nutrition · 2026-02-12

## TL;DR

This study shows that probiotics and prebiotics improve gut microbiota diversity and reduce BMI and cholesterol in adults.

## Contribution

The study provides empirical evidence linking probiotic and prebiotic use to improved gut microbiota and metabolic outcomes in adults.

## Key findings

- Probiotics and prebiotics increased alpha and beta diversity of gut microbiota.
- Both interventions led to significant reductions in BMI and cholesterol levels.
- Probiotics increased Lactobacillus and Bifidobacterium, while prebiotics increased Bifidobacterium and F. prausnitzii.

## Abstract

Probiotics and prebiotics are known to regulate the gut microbiota, however, their relations with the metabolic and nutritional outcomes in adults are under-investigated in practical environments.

To provide light on microbiome-targeted metabolic health initiatives, this retrospective study investigates relationships among probiotic and prebiotic therapies, gut microbiota profiles, and nutritional outcomes.

Clinical and nutritional history (n = 350 adults) in probiotic (n = 140), prebiotic (n = 120), and control (n = 90) were compared. The microbiota data were obtained with the help of 16S rRNA sequencing in the stool samples at baseline and 4–12 weeks of the intervention. Alpha (Shannon, Simpson) and beta diversity (Bray-Curtis) was evaluated by means of PERMANOVA, and the relative abundance of the main taxa (Lactobacillus spp., Bifidobacterium spp., Faecalibacterium prausnitzii) was determined. The adjusted ANCOVA and multivariate regression models adjusted to the difference between baseline were used to analyze the anthropometric and biochemical outcomes, including body mass index (BMI) and lipid profiles.

Alpha diversity (Shannon index: probiotics 3.4–4.2, p < 0.01; prebiotics 3.3–4.0, p < 0.01) and beta diversity clustering (PERMANOVA R2 = 0.12, p < 0.001 in probiotics) were significantly increased by the use of probiotics and prebiotics, respectively. Lactobacillus (2.1–4.8%, p < 0.01) and Bifidobacterium (3.5–7.9%, p < 0.001) were increased due to probiotic supplementation, whereas Bifidobacterium (3.7–6.8%, p < 0.001) and F. prausnitzii (6.1–8.3%, p = 0.04) were increased due to prebiotics supplementation. The two interventions were better than controls in terms of BMI and lipid levels (reduction of BMI: probiotics −1.6 + − 0.4 kg/m2, prebiotics −2.0 + − 0.5 kg/m2; total cholesterol: probiotics −18 + −5 mg/dL, prebiotics −17 + −6 mg/dL; all p < 0.05).

The use of probiotic and prebiotic supplementation was found to be related to an augmented gut microbial and better metabolic results in grown-ups. Such results point to possible advantages of the dietary microbiota modulation, but due to the retrospective design, it is not possible to make causal conclusions.

## Linked entities

- **Species:** Faecalibacterium prausnitzii (taxon 853)

## Full-text entities

- **Genes:** INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}
- **Diseases:** obese (MESH:D009765), overweight (MESH:D050177), metabolic dysregulation (MESH:D021081), celiac disease (MESH:D002446), gastrointestinal symptoms (MESH:D012817), gut-associated inflammation (MESH:D007249), metabolic syndrome (MESH:D024821), dysbiosis (MESH:D064806), diabetes (MESH:D003920), flatulence (MESH:D005414), IBD (MESH:D015212), adiposity (MESH:D018205), systemic (MESH:D015619), bloating (MESH:C535647), intestinal (MESH:D007410), hypertension (MESH:D006973), cardiovascular disease (MESH:D002318), infections (MESH:D007239), gastrointestinal conditions (MESH:D005767)
- **Chemicals:** inulin (MESH:D007444), cholesterol (MESH:D002784), vitamin D (MESH:D014807), fiber (MESH:D004043), triglyceride (MESH:D014280), FOS (MESH:C116580), Prebiotics (MESH:D056692), lipid (MESH:D008055), acetate (MESH:D000085), glucose (MESH:D005947), SCFAs (MESH:D005232), GOS (-), bile salt (MESH:D001647), butyrate (MESH:D002087), propionate (MESH:D011422), starch (MESH:D013213)
- **Species:** Bifidobacterium adolescentis (species) [taxon 1680], Lactobacillus acidophilus (species) [taxon 1579], Bifidobacterium longum (species) [taxon 216816], Lacticaseibacillus rhamnosus (species) [taxon 47715], Saccharomyces boulardii [taxon 252598], Lactobacillus (genus) [taxon 1578], Bifidobacterium bifidum (species) [taxon 1681], Lactiplantibacillus plantarum (species) [taxon 1590], Bifidobacterium (genus) [taxon 1678], Homo sapiens (human, species) [taxon 9606], Faecalibacterium prausnitzii (species) [taxon 853]

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12935890/full.md

## Figures

1 figure with captions in the complete paper: https://tomesphere.com/paper/PMC12935890/full.md

## References

28 references — full list in the complete paper: https://tomesphere.com/paper/PMC12935890/full.md

---
Source: https://tomesphere.com/paper/PMC12935890