# The first single-stranded DNA virus targeting Pectobacterium belongs to the family Microviridae and demonstrates a broad host range to Pectobacterium brasiliense soft rot pathogens

**Authors:** Julie Stenberg Pedersen, Alexander Byth Carstens, Magnus Rothgardt, Anouk Viry, Frank Hille, Charles M.A.P. Franz, Witold Kot, Artyom Egorov, Gemma Atkinson, Lars Hestbjerg Hansen

PMC · DOI: 10.1007/s00705-026-06543-2 · Archives of Virology · 2026-02-25

## TL;DR

This paper describes the first single-stranded DNA virus that targets Pectobacterium, a harmful bacteria causing plant diseases, and shows it could be a useful biocontrol agent.

## Contribution

The discovery of the first single-stranded DNA phage from the Microviridae family targeting Pectobacterium.

## Key findings

- Phage Mimer infects a broad range of Pectobacterium brasiliense isolates.
- Phage Mimer has a latent period of 65 minutes and a burst size of about 79 virions per cell.
- Phage Mimer is proposed to belong to a new genus within the subfamily Bullavirinae.

## Abstract

Pectobacterium brasiliense (Pbr) is known to be one of the most virulent Pectobacterium species and is generally widely distributed across the globe, especially known for causing soft rot in potato-tubers and black leg in potato-plants. Currently no treatment mechanism exists, and many studies have focused on alternative treatment approaches such as biocontrol agents. Several studies have used phages targeting Pectobacterium species as effective biocontrol agents. This study is the first description of a single-stranded DNA phage belonging to the family Microviridae that targets Pectobacterium. The novel Pectobacterium phage Mimer is proposed to belong to a new genus within the subfamily Bullavirinae in the family Microviridae. Phage Mimer has a genome size of 5879 nt with twelve predicted gene products. Seven out of twelve gene products could be assigned with a function based on either amino acid sequence or structural similarity. Gene synteny and phylogenetic analyses suggest that phage Mimer is part of the subfamily Bullavirinae. Phage Mimer proved to infect a broad range of Pbr isolates but showed a poor adsorption rate as only 17% of phage particles adsorbed within 10 min on the isolation host. Growth kinetics showed phage Mimer to have a latent period of 65 min and an average burst size of approximately 79 virions per cell. Phage Mimer is the first ssDNA phage targeting Pectobacterium and could be a promising biocontrol agent with great therapeutic potential, based on both the small genome size and the well-known genome architecture of model phage phiX174.

The online version contains supplementary material available at 10.1007/s00705-026-06543-2.

## Linked entities

- **Species:** Pectobacterium brasiliense (taxon 180957)

## Full-text entities

- **Genes:** lysis protein [NCBI Gene 6921859]
- **Diseases:** infected (MESH:D007239)
- **Chemicals:** MgCl2 (MESH:D015636), CaCl2and (-), NaCl (MESH:D012965), EDTA (MESH:D004492), agar (MESH:D000362), uranyl acetate (MESH:C005460), carbon (MESH:D002244), water (MESH:D014867), SM (MESH:D012493), agarose (MESH:D012685), CaCl2 (MESH:D002122), PVDF (MESH:C024865), copper (MESH:D003300), SDS (MESH:D012967), PEG (MESH:C000595216)
- **Species:** Saccharomycetales sp. RP (species) [taxon 1198481], Escherichia coli (E. coli, species) [taxon 562], Salmonella (genus) [taxon 590], Pectobacterium atrosepticum (species) [taxon 29471], Escherichia phage alpha3 (no rank) [taxon 10849], Pectobacterium parmentieri (species) [taxon 1905730], Alphatrevirus (genus) [taxon 1910951], Sinsheimervirus phiX174 (species) [taxon 10847], Gequatrovirus (genus) [taxon 1910952], Homo sapiens (human, species) [taxon 9606], Pectobacterium (genus) [taxon 122277], Solanum tuberosum (potatoes, species) [taxon 4113], Microviricetes (isometric ssDNA phages, class) [taxon 10841], Pectobacterium phage Mimer (species) [taxon 2961839], Sinsheimervirus (genus) [taxon 1910954], Escherichia phage G4 (no rank) [taxon 10843], Plagiostoma versatile (species) [taxon 940273], Pectobacteriaceae (family) [taxon 1903410]
- **Mutations:** C at 200, C at 100, L120C
- **Cell lines:** ON872163.1 — Mus musculus (Mouse), Hybridoma (CVCL_C7RB), phiX174 — Homo sapiens (Human), Rhabdomyosarcoma, Cancer cell line (CVCL_U955)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12935840/full.md

## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12935840/full.md

## References

8 references — full list in the complete paper: https://tomesphere.com/paper/PMC12935840/full.md

---
Source: https://tomesphere.com/paper/PMC12935840