# Research progress in SYNGAP1-related neurodevelopmental disorders: from pathogenesis to therapeutic strategies

**Authors:** Jia Zhang, Gong xue, Xiaoqian Wang, Xueyi Rao, Jun Chen, Lijuan Fan, Liqin Liu, Jing Gan

PMC · DOI: 10.3389/fneur.2026.1773363 · Frontiers in Neurology · 2026-02-12

## TL;DR

This paper reviews the causes and treatment options for SYNGAP1-related neurodevelopmental disorders, focusing on how SynGAP1 mutations affect brain function and potential therapies.

## Contribution

The paper provides a comprehensive review of molecular mechanisms and emerging precision therapies for SYNGAP1-related disorders.

## Key findings

- SYNGAP1 mutations disrupt synaptic plasticity and neural circuit balance, leading to developmental and behavioral issues.
- Emerging therapies like gene supplementation and antisense oligonucleotides show promise for treating SYNGAP1-related disorders.
- Cell-type specificity and developmental timing are critical for SynGAP1's role in neural function and disease progression.

## Abstract

SYNGAP1-related neurodevelopmental disorder (SRD) is a monogenic inherited brain disorder caused by heterozygous loss-of-function mutations in the SYNGAP1 gene. The clinical presentation is complex, with core features including global developmental delay/intellectual disability, epilepsy, autism spectrum disorder, and various behavioral abnormalities. The SynGAP protein, encoded by the SYNGAP1 gene, is a key regulatory protein in the postsynaptic density of excitatory neurons. Through its GTPase-activating protein activity and structural scaffolding functions, it plays a central role in regulating the Ras/Rap signaling pathways, AMPA receptor trafficking, and maintaining the excitatory/inhibitory balance of neural networks. Haploinsufficiency of SynGAP leads to synaptic plasticity disruption and neural circuit imbalance, thereby triggering a series of neurophysiological and behavioral phenotypes. This article systematically reviews the molecular pathogenesis of SRDs, summarizes advances in treatment from conventional anti-seizure medications to emerging precision therapeutic strategies such as gene supplementation, antisense oligonucleotide-mediated splicing modulation, and translation-activating RNAs, and discusses current research challenges and future directions. Key concepts central to understanding SRDs include the critical developmental periods during which SynGAP exerts its primary influence on synaptic maturation, and cell-type specificity, referring to the differential expression and function of SynGAP in distinct neuronal populations (e.g., excitatory pyramidal neurons vs. parvalbumin-positive interneurons), which underlies circuit-level dysfunction. The aim is to provide a comprehensive perspective for an in-depth understanding of the disease and to support the development of effective therapies.

## Linked entities

- **Genes:** SYNGAP1 (synaptic Ras GTPase activating protein 1) [NCBI Gene 8831]
- **Proteins:** SYNGAP1 (synaptic Ras GTPase activating protein 1)
- **Diseases:** neurodevelopmental disorder (MONDO:0700092), autism spectrum disorder (MONDO:0005258), epilepsy (MONDO:0005027)

## Full-text entities

- **Genes:** Crebbp (CREB binding protein) [NCBI Gene 12914] {aka CBP, CBP/p300, KAT3A, p300/CBP}, FBXL15 (F-box and leucine rich repeat protein 15) [NCBI Gene 79176] {aka FBXO37, Fbl15, JET}, gap-2 (Ras GTPase-activating protein gap-2) [NCBI Gene 181172], ZHX2 (zinc fingers and homeoboxes 2) [NCBI Gene 22882] {aka AFR1, RAF}, sst2 (somatostatin 2) [NCBI Gene 79186] {aka PPSS2, SSII, smst, som, sst}, BDNF (brain derived neurotrophic factor) [NCBI Gene 627] {aka ANON2, BULN2}, Tinagl1 (tubulointerstitial nephritis antigen-like 1) [NCBI Gene 94242] {aka 1110021J17Rik, AZ-1, AZ1, Arg1, Lcn7, TARP}, pvalb3 (parvalbumin 3) [NCBI Gene 100000771] {aka zgc:56217, zgc:77798}, GPHA2 (glycoprotein hormone subunit alpha 2) [NCBI Gene 170589] {aka A2, GPA2, ZSIG51}, Rasa1 (RAS p21 protein activator 1) [NCBI Gene 218397] {aka Gap, RasGAP, Rasa}, GRIN2B (glutamate ionotropic receptor NMDA type subunit 2B) [NCBI Gene 2904] {aka DEE27, EIEE27, GluN2B, MRD6, NMDAR2B, NR2B}, SYNGAP1 (synaptic Ras GTPase activating protein 1) [NCBI Gene 8831] {aka MRD5, RASA5, SYNGAP}, Dlg4 (discs large MAGUK scaffold protein 4) [NCBI Gene 13385] {aka Dlgh4, PSD-95, PSD95, SAP90, SAP90A}, Ndn (necdin, MAGE family member) [NCBI Gene 17984] {aka Peg6}, MAP2K7 (mitogen-activated protein kinase kinase 7) [NCBI Gene 5609] {aka JNKK2, MAPKK7, MEK, MEK 7, MKK7, PRKMK7}, LRPAP1 (LDL receptor related protein associated protein 1) [NCBI Gene 4043] {aka A2MRAP, A2RAP, HBP44, MYP23, RAP, alpha-2-MRAP}, syngap1b (synaptic Ras GTPase activating protein 1b) [NCBI Gene 100151149] {aka si:dkey-246f6.1}, PTBP1 (polypyrimidine tract binding protein 1) [NCBI Gene 5725] {aka HNRNP-I, HNRNPI, HNRPI, PTB, PTB-1, PTB-T}, RAB5A (RAB5A, member RAS oncogene family) [NCBI Gene 5868] {aka RAB5}, Ep300 (E1A binding protein p300) [NCBI Gene 328572] {aka A430090G16, A730011L11, KAT3B, p300, p300 HAT}, sst1.1 (somatostatin 1, tandem duplicate 1) [NCBI Gene 326018] {aka PPSS1, SS1, fd57e04, sst1, wu:fd57e04, zgc:92779}, MAPK1 (mitogen-activated protein kinase 1) [NCBI Gene 5594] {aka ERK, ERK-2, ERK2, ERT1, MAPK2, NS13}, PTBP2 (polypyrimidine tract binding protein 2) [NCBI Gene 58155] {aka PTBLP, brPTB, nPTB}, Bcl2a1a (B cell leukemia/lymphoma 2 related protein A1a) [NCBI Gene 12044] {aka A1, Bcl2a1, Bfl-1, Hbpa1}, Nkx2-1 (NK2 homeobox 1) [NCBI Gene 21869] {aka Nkx2.1, T/EBP, Titf1, Ttf-1}, Hsp86-ps2 (heat shock protein 86, pseudogene 2) [NCBI Gene 111042] {aka 86kDa, Hsp86-3, Hsp90}, RAC1 (Rac family small GTPase 1) [NCBI Gene 5879] {aka MIG5, MRD48, Rac-1, TC-25, p21-Rac1}, Syngap1 (synaptic Ras GTPase activating protein 1 homolog (rat)) [NCBI Gene 240057] {aka Gm1963, Syngap}, EIF3A (eukaryotic translation initiation factor 3 subunit A) [NCBI Gene 8661] {aka EIF3, EIF3S10, P167, TIF32, eIF3-p170, eIF3-theta}, EIF4G1 (eukaryotic translation initiation factor 4 gamma 1) [NCBI Gene 1981] {aka EIF-4G1, EIF4F, EIF4G, EIF4GI, P220, PARK18}, Sugt1 (SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)) [NCBI Gene 67955] {aka 2410174K12Rik, SGT1}, Lrpap1 (low density lipoprotein receptor-related protein associated protein 1) [NCBI Gene 16976] {aka HBP44, RAP}, ADRA2B (adrenoceptor alpha 2B) [NCBI Gene 151] {aka ADRA2L1, ADRA2RL1, ADRARL1, ALPHA2BAR, FAME2, alpha-2BAR}, PLEK (pleckstrin) [NCBI Gene 5341] {aka P47, PLEK1}, SYN1 (synapsin I) [NCBI Gene 6853] {aka EPILX, EPILX1, MRX50, SYN1a, SYN1b, SYNI}, Mapk1 (mitogen-activated protein kinase 1) [NCBI Gene 26413] {aka 9030612K14Rik, ERK, Erk2, MAPK2, PRKM2, Prkm1}, CAMK2G (calcium/calmodulin dependent protein kinase II gamma) [NCBI Gene 818] {aka CAMK, CAMK-II, CAMKG, MRD59}, CYFIP1 (cytoplasmic FMR1 interacting protein 1) [NCBI Gene 23191] {aka P140SRA-1, SHYC, SRA-1, SRA1}, TRPV1 (transient receptor potential cation channel subfamily V member 1) [NCBI Gene 7442] {aka VR1}
- **Diseases:** gait abnormalities (MESH:D020233), epileptiform activity (MESH:D014277), hypercapnic (MESH:D012131), motor, cognitive, social, and sensory processing abnormalities (OMIM:300082), sensory (MESH:D009477), hypoxic (MESH:D002534), gamma oscillation (MESH:D006362), epileptiform discharges (MESH:D019522), aggressive/impulsive behaviors (MESH:D010554), atonic seizures (MESH:D012640), autosomal dominant disorders (MESH:D030342), deficits (MESH:D009461), absence seizures (MESH:D004832), developmental delay (MESH:D002658), hyperactivity (MESH:D006948), Haploinsufficiency of (MESH:C565160), cognitive and (MESH:D003072), eyelid myoclonia (MESH:D005141), motor impairments (MESH:D000068079), synaptic abnormalities (MESH:D012183), spasms (MESH:D013035), drop attacks (MESH:D013575), abnormalities (MESH:D000014), Epilepsy (MESH:D004827), Syngap1 deficiency (MESH:D007153), visually sensitive epilepsy (MESH:D014786), pain (MESH:D010146), ataxia (MESH:D001259), sleep disorders (MESH:D012893), autism spectrum disorder (MESH:D000067877), ID (MESH:D008607), brain disease (MESH:D001927), inherited brain disorder (MESH:D020739), impaired working and reference memory (MESH:D053591), behavioral abnormalities (MESH:D001523), cognitive and behavioral abnormalities (OMIM:614756), SRD (MESH:D063647), ASD (MESH:D001321), behavioral deficits (MESH:D019958), social abnormalities (MESH:D000067404), anxiety (MESH:D001007)
- **Chemicals:** Lovastatin (MESH:D008148), lipid (MESH:D008055), guanfacine (MESH:D016316), glutamate (MESH:D018698), GDP (MESH:D006153), Rosuvastatin (MESH:D000068718), levetiracetam (MESH:D000077287), perampanel (MESH:C551441), risperidone (MESH:D018967), GTP (MESH:D006160), AMPA receptor antagonists (-), lamotrigine (MESH:D000077213), ASO (MESH:D016376), aripiprazole (MESH:D000068180), valproate (MESH:D014635)
- **Species:** Danio rerio (leopard danio, species) [taxon 7955], Rattus norvegicus (brown rat, species) [taxon 10116], Caenorhabditis elegans (species) [taxon 6239], Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** c.3583-9G > A, L813RfsX22

## Full text

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## References

65 references — full list in the complete paper: https://tomesphere.com/paper/PMC12935682/full.md

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Source: https://tomesphere.com/paper/PMC12935682