# Case Report: An uncommon germline variant of familial GISTs: broadening the landscape of inherited GIST syndromes

**Authors:** Pallavi Roshini Ganesan, Max Vogel, Daniel Knight, Danielle Rosenzweig, Ross Michels

PMC · DOI: 10.3389/fonc.2026.1662921 · Frontiers in Oncology · 2026-02-12

## TL;DR

This case report describes two family members with inherited gastrointestinal stromal tumors (GISTs) caused by a rare germline KIT gene variant, expanding the known genetic causes of familial GIST.

## Contribution

The study identifies a novel germline KIT variant in Exon 11 (c.1735_1737del) associated with familial GIST and demonstrates successful treatment with Imatinib.

## Key findings

- Two family members with multifocal GISTs were found to have a germline KIT gene variant (c.1735_1737del).
- Both patients responded well to treatment with Imatinib.
- The variant expands the genetic landscape of inherited GIST syndromes.

## Abstract

Familial Gastrointestinal Stromal tumors (GIST) are rare neoplasms but GIST tumors are some of the most common soft tissue sarcoma subtypes. The incidence is between 10 to 15 cases per million worldwide and approximately 500 cases in the USA [1]. GIST is often diagnosed based on clinical presentation, the tumor’s anatomic location and immunohistochemistry (IHC) pattern [1]. Patients with familial GIST develop GIST tumors that are numerous, smaller in size, and occur in the background of intestinal cells of Cajal hyperplasia [2]. The first family with features of inherited GIST was reported in the 1990s which was the first time Exon 11 KIT variant was reported [3]. We present two cases of family members affected with multifocal GIST tumors who underwent germline genetic analysis and were found to have germline pathogenic variants in Exon 11 of the KIT gene [c.1735_1737del (p.Asp579del)]. Both patients were treated with Imatinib with good response.

## Linked entities

- **Genes:** KIT (KIT proto-oncogene, receptor tyrosine kinase) [NCBI Gene 3815]
- **Chemicals:** Imatinib (PubChem CID 5291)
- **Diseases:** Gastrointestinal Stromal tumors (MONDO:0011719), GIST (MONDO:0011719)

## Full-text entities

- **Genes:** KIT (KIT proto-oncogene, receptor tyrosine kinase) [NCBI Gene 3815] {aka C-Kit, CD117, MASTC, PBT, SCFR}, ANO1 (anoctamin 1) [NCBI Gene 55107] {aka DOG1, INDMS, MYMY7, ORAOV2, TAOS2, TMEM16A}, NF1 (neurofibromin 1) [NCBI Gene 4763] {aka NFNS, VRNF, WSS}, PDGFRA (platelet derived growth factor receptor alpha) [NCBI Gene 5156] {aka CD140A, PDGFR-2, PDGFR2}, KIT (KIT proto-oncogene, receptor tyrosine kinase) [NCBI Gene 403811] {aka c-KIT}, KITLG (KIT ligand) [NCBI Gene 4254] {aka DCUA, DFNA69, FPH2, FPHH, KL-1, Kitl}, TXK (TXK tyrosine kinase) [NCBI Gene 7294] {aka BTKL, PSCTK5, PTK4, RLK, TKL}
- **Diseases:** obstruction of small bowel (MESH:D007409), anorexia (MESH:D000855), abdominal pain (MESH:D015746), metastatic disease (MESH:D000092182), portal vein dilation (MESH:C563407), Cancer (MESH:D009369), shortness of breath (MESH:D004417), Helicobacter pylori infection (MESH:D016481), GIST (MESH:D046152), hepatic metastases (MESH:D009362), melanoma (MESH:D008545), portal hypertension (MESH:D006975), ascites (MESH:D001201), vomiting (MESH:D014839), intra-abdominal masses (MESH:D000082122), duodenal dilation (MESH:D004382), soft tissue sarcoma (MESH:D012509), Cajal hyperplasia (MESH:D006965), fatigue (MESH:D005221), gastrointestinal neoplasms (MESH:D005770), hepatic lesion (MESH:D056486), GI bleed (MESH:D006470), arteriovenous malformations (MESH:D001165), abdominal distention (MESH:D000007), hypervascular lesions (MESH:D009059), nausea (MESH:D009325), duodenal lesions (MESH:D004378)
- **Chemicals:** 18F-Fluorodeoxyglucose (MESH:D019788), Lasix (MESH:D005665), Imatinib (MESH:D000068877), Aldactone (MESH:D013148)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** Tyr553Cys, deletion at codon 579, 1756_1758delGAT, deletion at position 579, 1753del3, c.1735_1737del, Tyr503 duplication, Lys 550 to Val, c.1735_1737del, p.L576P

## Full text

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## Figures

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## References

20 references — full list in the complete paper: https://tomesphere.com/paper/PMC12935663/full.md

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Source: https://tomesphere.com/paper/PMC12935663