# Epigenetic Drivers of Pulmonary Hypertension: Environment Meets Genome

**Authors:** William N Whitley, Richard M Millis

PMC · DOI: 10.7759/cureus.104241 · Cureus · 2026-02-25

## TL;DR

This paper explores how epigenetic changes, influenced by environmental factors, contribute to pulmonary hypertension and suggests new ways to treat the disease.

## Contribution

The paper introduces a framework linking environmental exposures to epigenetic changes in pulmonary hypertension, offering new therapeutic approaches.

## Key findings

- Epigenetic changes like DNA methylation and histone modification are linked to pulmonary hypertension.
- Environmental factors such as obesity and cigarette smoke trigger epigenetic reprogramming in the disease.
- Molecular hubs like BMPR2 and TGF-β are central to the epigenetic mechanisms in pulmonary hypertension.

## Abstract

Pulmonary hypertension (PH) is a progressive disease in which the pulmonary arteries thicken and narrow, raising pulmonary vascular resistance (PVR) and eventually straining the right ventricle. Known gene mutations explain only a minority of cases and often do not account for why the disease starts, worsens, or varies so widely between patients. Growing evidence suggests that epigenetic changes, chemical marks on DNA and its packaging that alter how genes are used without changing the DNA sequence, help explain this gap. These changes, including DNA methylation, histone modification, and non-coding RNAs, can be triggered by common exposures and disease states, and they can produce lasting shifts in vascular, immune, and metabolic pathways.

This narrative review synthesizes current data showing how intrinsic stresses (mitochondrial dysfunction, oxidative stress, and cancer-like metabolic reprogramming) interact with extrinsic and often modifiable factors. Obesity, cigarette smoke, asbestos exposure, chronic hypoxia, and systemic inflammation drive PH through epigenetic reprogramming. We highlight major molecular hubs implicated across studies, including bone morphogenetic factor receptor 2 (BMPR2), NOTCH3, endothelin-1 (ET-1), transforming growth factor‑β (TGF-β), interleukin‑6 (IL-6), and CCL5, and we summarize emerging therapeutic approaches aimed at epigenetic regulators and microRNA networks.

This narrative review was not conducted under Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines and does not constitute a formal systematic review. The information in this review provides a practical framework for clinicians and researchers to improve risk assessments, to employ biomarkers, and to develop therapies that go beyond vasodilation to address upstream drivers of pulmonary arterial remodeling. This framework may also serve as a model for other difficult-to-treat diseases in which incomplete genetic explanations and limited attention to environmental exposures have slowed progress in prevention, early detection, and personalized treatment.

## Linked entities

- **Genes:** BMPR2 (bone morphogenetic protein receptor type 2) [NCBI Gene 659], NOTCH3 (notch receptor 3) [NCBI Gene 4854], EDN1 (endothelin 1) [NCBI Gene 1906], TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040], IL6 (interleukin 6) [NCBI Gene 3569], CCL5 (C-C motif chemokine ligand 5) [NCBI Gene 6352]
- **Diseases:** pulmonary hypertension (MONDO:0005149)

## Full-text entities

- **Genes:** Il1rn (interleukin 1 receptor antagonist) [NCBI Gene 16181] {aka F630041P17Rik, IL-1ra}, NOTCH2 (notch receptor 2) [NCBI Gene 4853] {aka AGS2, HJCYS, hN2}, PDGFB (platelet derived growth factor subunit B) [NCBI Gene 5155] {aka IBGC5, PDGF-2, PDGF2, SIS, SSV, c-sis}, ELN (elastin) [NCBI Gene 2006] {aka ADCL1, SVAS, WBS, WS}, SOD1 (superoxide dismutase 1) [NCBI Gene 6647] {aka ALS, ALS1, HEL-S-44, IPOA, SOD, STAHP}, DNER (delta/notch like EGF repeat containing) [NCBI Gene 92737] {aka UNQ26, bet}, Casp8 (caspase 8) [NCBI Gene 64044] {aka CASP-8}, HDAC9 (histone deacetylase 9) [NCBI Gene 9734] {aka HD7, HD7b, HD9, HDAC, HDAC7B, HDAC9B}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, COX6B1 (cytochrome c oxidase subunit 6B1) [NCBI Gene 1340] {aka COX6B, COXG, COXVIb1, MC4DN7}, CASP1 (caspase 1) [NCBI Gene 834] {aka ICE, IL1BC, P45}, NLRP3 (NLR family pyrin domain containing 3) [NCBI Gene 114548] {aka AGTAVPRL, AII, AVP, C1orf7, CIAS1, CLR1.1}, H4C6 (H4 clustered histone 6) [NCBI Gene 8361] {aka H4, H4/c, H4FC, HIST1H4F}, BMPR2 (bone morphogenetic protein receptor type 2) [NCBI Gene 659] {aka BMPR-II, BMPR3, BMR2, BRK-3, POVD1, PPH1}, MAPK8 (mitogen-activated protein kinase 8) [NCBI Gene 5599] {aka JNK, JNK-46, JNK1, JNK1A2, JNK21B1/2, PRKM8}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, MAPK1 (mitogen-activated protein kinase 1) [NCBI Gene 5594] {aka ERK, ERK-2, ERK2, ERT1, MAPK2, NS13}, MERTK (MER proto-oncogene, tyrosine kinase) [NCBI Gene 10461] {aka MER, RP38, Tyro12, c-Eyk, c-mer}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, CCR5 (C-C motif chemokine receptor 5) [NCBI Gene 1234] {aka CC-CKR-5, CCCKR5, CCR-5, CD195, CKR-5, CKR5}, MIR190A (microRNA 190a) [NCBI Gene 406965] {aka MIR190, MIRN190, hsa-mir-190a, miR-190, mir-190a}, DNMT1 (DNA methyltransferase 1) [NCBI Gene 1786] {aka ADCADN, AIM, CXXC9, DNMT, HSN1E, MCMT}, H3P16 (H3 histone pseudogene 16) [NCBI Gene 644914] {aka H3.6, H3F3AP6, p21}, RAB5A (RAB5A, member RAS oncogene family) [NCBI Gene 5868] {aka RAB5}, PDP1 (pyruvate dehydrogenase phosphatase catalytic subunit 1) [NCBI Gene 54704] {aka PDH, PDP, PDPC, PDPC 1, PPM2A, PPM2C}, IFNA1 (interferon alpha 1) [NCBI Gene 3439] {aka IFL, IFN, IFN-ALPHA, IFN-alphaD, IFNA13, IFNA@}, TGFBR1 (transforming growth factor beta receptor 1) [NCBI Gene 7046] {aka AAT5, ACVRLK4, ALK-5, ALK5, ESS1, LDS1}, IL21 (interleukin 21) [NCBI Gene 59067] {aka CVID11, IL-21, Za11}, SNRNP70 (small nuclear ribonucleoprotein U1 subunit 70) [NCBI Gene 6625] {aka RNPU1Z, RPU1, SNRP70, Snp1, U1-70K, U170K}, Casp3 (caspase 3) [NCBI Gene 25402] {aka CPP32-beta, Lice, Yama}, ET-1 [NCBI Gene 100009270], MIR17 (microRNA 17) [NCBI Gene 406952] {aka MIR17-5p, MIR91, MIRN17, MIRN91, hsa-mir-17, miR-17}, BMP1 (bone morphogenetic protein 1) [NCBI Gene 649] {aka OI13, PCOLC, PCP, TLD}, MIR21 (microRNA 21) [NCBI Gene 406991] {aka MIRN21, hsa-mir-21, miR-21, miRNA21}, EDNRA (endothelin receptor type A) [NCBI Gene 1909] {aka ET-A, ETA, ETA-R, ETAR, ETRA, MFDA}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, Vegfa (vascular endothelial growth factor A) [NCBI Gene 22339] {aka L-VEGF, Vegf, Vpf}, COX2 (cytochrome c oxidase subunit II) [NCBI Gene 4513] {aka COII, MTCO2}, PVR (PVR cell adhesion molecule) [NCBI Gene 5817] {aka CD155, HVED, NECL5, Necl-5, PVS, TAGE4}, PAH (phenylalanine hydroxylase) [NCBI Gene 5053] {aka PH, PKU, PKU1}, Tnf (tumor necrosis factor) [NCBI Gene 24835] {aka RATTNF, TNF-alpha, Tnfa}, Il1b (interleukin 1 beta) [NCBI Gene 16176] {aka IL-1beta, Il-1b}, MFSD11 (major facilitator superfamily domain containing 11) [NCBI Gene 79157] {aka ET}, SIN3A (SIN3 transcription regulator family member A) [NCBI Gene 25942] {aka CHR15DELq24, DEL15Q24, WITKOS}, STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, NPPB (natriuretic peptide B) [NCBI Gene 4879] {aka BNP, Iso-ANP}, PTGS2 (prostaglandin-endoperoxide synthase 2) [NCBI Gene 5743] {aka COX-2, COX2, GRIPGHS, PGG/HS, PGHS-2, PHS-2}, Nfkb1 (nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105) [NCBI Gene 18033] {aka NF-KB1, NF-kappaB, NF-kappaB1, p105, p50, p50/p105}, RASEF (RAS and EF-hand domain containing) [NCBI Gene 158158] {aka RAB45, TSG}, IL6R (interleukin 6 receptor) [NCBI Gene 3570] {aka CD126, HIES5, IL-1Ra, IL-6R, IL-6R-1, IL-6RA}, Bid (BH3 interacting domain death agonist) [NCBI Gene 64625], CDA (cytidine deaminase) [NCBI Gene 978] {aka CDD}, Trp53-ps (transformation related protein 53, pseudogene) [NCBI Gene 22060], SDC1 (syndecan 1) [NCBI Gene 6382] {aka CD138, SDC, SYND1, syndecan}, CCL5 (C-C motif chemokine ligand 5) [NCBI Gene 6352] {aka D17S136E, RANTES, SCYA5, SIS-delta, SISd, TCP228}, IL18 (interleukin 18) [NCBI Gene 3606] {aka IGIF, IL-18, IL-1g, IL1F4}, DNMT3A (DNA methyltransferase 3 alpha) [NCBI Gene 1788] {aka DNMT3A2, HESJAS, M.HsaIIIA, TBRS}, PAEP (progestagen associated endometrial protein) [NCBI Gene 5047] {aka GD, GdA, GdF, GdS, PAEG, PEP}, Il6 (interleukin 6) [NCBI Gene 16193] {aka Il-6}, ADIPOQ (adiponectin, C1Q and collagen domain containing) [NCBI Gene 9370] {aka ACDC, ACRP30, ADIPQTL1, ADPN, APM-1, APM1}
- **Diseases:** IPH (MESH:D065627), enlarged pulmonary arteries (MESH:D000071079), pulmonary vascular (MESH:D057772), chest discomfort (MESH:D013898), UCTDs (MESH:D000074079), cardiovascular conditions (MESH:D002318), pulmonary vascular remodeling (MESH:D066253), myocardial infarction (MESH:D009203), immune (MESH:D007154), CTDs (MESH:D003240), hypertension (MESH:D006973), atherosclerosis (MESH:D050197), PAH Disease (MESH:D000081029), thrombotic (MESH:D013927), Chronic (MESH:D002908), PH (MESH:D006976), immune dysregulation (OMIM:614878), Cardiac remodeling (MESH:D020257), cardiac hypertrophy (MESH:D006332), RV hypertrophy (MESH:D017380), cardiac dysfunction (MESH:D006331), hypocapnia (MESH:D016857), pulmonary fibrosis (MESH:D011658), asbestos (MESH:D001195), RV heart failure (MESH:D006333), cardiopulmonary disorder (MESH:D006323), lung injury (MESH:D055370), dyspnea (MESH:D004417), vasculopathy (MESH:D000090122), reduced (MESH:D001523), RV failure (MESH:D051437), cancer (MESH:D009369), endothelial dysfunction (MESH:D014652), lung disease (MESH:D008171), mitochondrial dysfunction (MESH:D028361), Chronic Inflammation (MESH:D007249), vasculitis (MESH:D014657), cardiac fibrosis (MESH:D005355), SLE (MESH:D008180), MCTDs (MESH:D008947), Hypoxia (MESH:D000860), SSc (MESH:D012595), fatigue (MESH:D005221), COPD (MESH:D029424), RV strain (MESH:D013180), lung inflammation (MESH:D011014), stroke (MESH:D020521), Obesity (MESH:D009765), hypoxic (MESH:D002534), autoimmune (MESH:D001327)
- **Chemicals:** catecholamines (MESH:D002395), Asbestos (MESH:D001194), H2O2 (MESH:D006861), superoxide (MESH:D013481), -blockers (-), glucose (MESH:D005947), ROS (MESH:D017382), calcium (MESH:D002118), pantothenic acid (MESH:D010205), MCT (MESH:C000709826), glutathione (MESH:D005978), CO (MESH:D002248), monocrotaline (MESH:D016686), prostaglandin (MESH:D011453), oxygen (MESH:D010100), methionine (MESH:D008715), pyruvate (MESH:D019289), NO (MESH:D009569), Norepinephrine (MESH:D009638), prostacyclin (MESH:D011464), acetyl-coenzyme A (MESH:D000105), essential oils (MESH:D009822), S-adenosyl methionine (MESH:D012436), cytosine (MESH:D003596)
- **Species:** Homo sapiens (human, species) [taxon 9606], Rattus norvegicus (brown rat, species) [taxon 10116], Human immunodeficiency virus (species) [taxon 12721], Bos taurus (bovine, species) [taxon 9913], Oryctolagus cuniculus (domestic rabbit, species) [taxon 9986], Mus musculus (house mouse, species) [taxon 10090], Human immunodeficiency virus 1 (no rank) [taxon 11676]

## Full text

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## Figures

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## References

57 references — full list in the complete paper: https://tomesphere.com/paper/PMC12935078/full.md

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Source: https://tomesphere.com/paper/PMC12935078