# Specific SLC25 carriers regulate mitochondrial protein synthesis

**Authors:** Danielle L. Rudler, Laetitia A. Hughes, Martin S. King, Jessica Baker, Richard G. Lee, Andrianto P. Gandadireja, Anisha Sunil, Samuel V. Fagan, Blake Payne, Nicola Gray, Tim McCubbin, Edmund R. S. Kunji, Oliver Rackham, Aleksandra Filipovska

PMC · DOI: 10.1126/sciadv.aeb0049 · Science Advances · 2026-02-25

## TL;DR

This study shows that specific mitochondrial carrier proteins from the SLC25 family are crucial for regulating mitochondrial protein synthesis and function.

## Contribution

The paper identifies specific SLC25 carriers and their roles in mitochondrial translation and energy function through genome-wide and multiomic analyses.

## Key findings

- SLC25A25, SLC25A44, SLC25A45, and SLC25A48 are essential for mitochondrial translation and oxidative phosphorylation.
- SLC25A48 is stabilized by choline and is involved in choline transport and mitochondrial membrane remodeling.
- Impaired transport of specific metabolites disrupts mitochondrial function and structure.

## Abstract

A genome-wide knockout screen identified members of the SLC25 family of mitochondrial carrier proteins as important regulators of the rate of de novo mitochondrial protein synthesis. To elucidate this relationship, we generated human cell knockouts for SLC25A25, SLC25A44, SLC25A45, and SLC25A48, which have been shown to exchange adenosine triphosphate-magnesium (ATP-Mg) and phosphate, branched-chain amino acids, methylated basic amino acids, and choline, respectively. Multiomic and functional analyses identified that these four carriers are crucial for mitochondrial translation, biogenesis and function of the oxidative phosphorylation system, as well as mitochondrial morphology. Thermostability screens showed that SLC25A48 is specifically stabilized by choline, and changes in the mitochondrial metabolome and lipidome indicated defects in choline biosynthetic pathways and remodeling of mitochondrial membranes, both consistent with SLC25A48 being a choline transporter. These results highlight the essential roles of specific SLC25 transporters in maintaining mitochondrial structure and function and show that impaired transport of branched-chain amino acids, methylated basic amino acids, ATP-Mg, and choline affects mitochondrial translation.

Mitochondrial carrier proteins control protein synthesis, dynamics, and energy function through selective metabolite transport.

## Linked entities

- **Genes:** SLC25A25 (solute carrier family 25 member 25) [NCBI Gene 114789], SLC25A44 (solute carrier family 25 member 44) [NCBI Gene 9673], SLC25A45 (solute carrier family 25 member 45) [NCBI Gene 283130], SLC25A48 (solute carrier family 25 member 48) [NCBI Gene 153328]
- **Chemicals:** adenosine triphosphate-magnesium (PubChem CID 18666496), branched-chain amino acids (PubChem CID 9886134), choline (PubChem CID 305)

## Full-text entities

- **Genes:** POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, SLC25A4 (solute carrier family 25 member 4) [NCBI Gene 291] {aka AAC1, ANT, ANT 1, ANT1, MTDPS12, MTDPS12A}, SLC25A44 (solute carrier family 25 member 44) [NCBI Gene 9673], SLC25A18 (solute carrier family 25 member 18) [NCBI Gene 83733] {aka GC2}, SLC25A10 (solute carrier family 25 member 10) [NCBI Gene 1468] {aka DIC, MTDPS19}, SLC25A13 (solute carrier family 25 member 13) [NCBI Gene 10165] {aka ARALAR2, CITRIN, CTLN2, NICCD}, SLC25A5 (solute carrier family 25 member 5) [NCBI Gene 292] {aka 2F1, AAC2, ANT2, T2, T3}, EREG (epiregulin) [NCBI Gene 2069] {aka EPR, ER, Ep}, SLC25A24 (solute carrier family 25 member 24) [NCBI Gene 29957] {aka APC1, SCAMC-1, SCAMC1}, SLC25A45 (solute carrier family 25 member 45) [NCBI Gene 283130], SLC25A11 (solute carrier family 25 member 11) [NCBI Gene 8402] {aka OGC, PGL6, PPGL6, SLC20A4}, SLC25A1 (solute carrier family 25 member 1) [NCBI Gene 6576] {aka CIC, CMS23, CTP, D2L2AD, SEA, SLC20A3}, PLAAT1 (phospholipase A and acyltransferase 1) [NCBI Gene 57110] {aka A-C1, H-REV107, HRASLS, HRASLS1, HRSL1, HSD28}, SLC25A43 (solute carrier family 25 member 43) [NCBI Gene 203427], STARD7 (StAR related lipid transfer domain containing 7) [NCBI Gene 56910] {aka ADCME, BAFME2, FAME, FAME2, FCMTE2, GTT1}, UCP1 (uncoupling protein 1) [NCBI Gene 7350] {aka SLC25A7, UCP}, SLC25A48 (solute carrier family 25 member 48) [NCBI Gene 153328], F10 (coagulation factor X) [NCBI Gene 2159] {aka FX, FXA}, SLC25A6 (solute carrier family 25 member 6) [NCBI Gene 293] {aka AAC3, ANT, ANT 2, ANT 3, ANT3, ANT3Y}, MRPL12 (mitochondrial ribosomal protein L12) [NCBI Gene 6182] {aka 5c5-2, L12mt, MRP-L31/34, MRPL7, MRPL7/L12, RPML12}, SLC25A3 (solute carrier family 25 member 3) [NCBI Gene 5250] {aka OK/SW-cl.48, PHC, PTP, PiC}, SLC25A22 (solute carrier family 25 member 22) [NCBI Gene 79751] {aka DEE3, EIEE3, GC-1, GC1, NET44}, SLC25A12 (solute carrier family 25 member 12) [NCBI Gene 8604] {aka AGC1, ARALAR, DEE39, EIEE39}, ABCB6 (ATP binding cassette subfamily B member 6 (LAN blood group)) [NCBI Gene 10058] {aka ABC, LAN, MTABC3, PRP, umat}, SLC25A25 (solute carrier family 25 member 25) [NCBI Gene 114789] {aka MCSC, PCSCL, SCAMC-2, SCAMC2}
- **Diseases:** choline (MESH:D002796), metabolic defects (MESH:D008659), multisystemic diseases (MESH:D004194), neurodegeneration (MESH:D019636), mitochondrial dysfunction (MESH:D028361), protease (MESH:C566273), swelling (MESH:D004487), breast cancer (MESH:D001943), mitochondrial fragmentation (MESH:D012892), mitochondrial defect (MESH:C565376)
- **Chemicals:** valine (MESH:D014633), CL (MESH:D002308), phospholipid (MESH:D010743), H2O (MESH:D014867), imidazole (MESH:C029899), tyrosine (MESH:D014443), leucine (MESH:D007930), PG (MESH:D010715), iodoacetamide (MESH:D007460), TMRE (MESH:C110932), LPE (MESH:C008301), MitoTracker Orange (MESH:C121372), glutamate (MESH:D018698), citrulline (MESH:D002956), isopropanol (MESH:D019840), SDS (MESH:D012967), dithiothreitol (MESH:D004229), CaCl2 (MESH:D002122), branched-chain amino acids (MESH:D000597), GABA (MESH:D005680), galactose (MESH:D005690), FCCP (MESH:D002259), glycine (MESH:D005998), sarcosine (MESH:D012521), asparagine (MESH:D001216), SC (MESH:D012538), NaCl (MESH:D012965), methanol (MESH:D000432), proline (MESH:D011392), succinate (MESH:D019802), MgCl2 (MESH:D015636), methionine (MESH:D008715), Oxygen (MESH:D010100), 2-aminobutanoic acid (MESH:C012223), uridine (MESH:D014529), GP (MESH:D020404), phosphate (MESH:D010710), PI (MESH:D010716), formic acid (MESH:C030544), acids (MESH:D000143), carboxylic acid (MESH:D002264), isoleucine (MESH:D007532), nitrogen (MESH:D009584), glycosphingolipid (MESH:D006028), antimycin (MESH:C032456), EDTA (MESH:D004492), choline (MESH:D002794), nickel (MESH:D009532), FITC (MESH:D016650), alanine (MESH:D000409), polyacrylamide (MESH:C016679), carbon (MESH:D002244), TCA (MESH:D014233), Bis-Tris (MESH:C026272), Triton X-100 (MESH:D017830), ADP (MESH:D000244), emetine (MESH:D004640), PVA (MESH:C063253), acetonitrile (MESH:C032159), glutamine (MESH:D005973)
- **Species:** Mycoplasma (genus) [taxon 2093], Mus musculus (house mouse, species) [taxon 10090], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** G1321A, aspartate/glutamate, E to G
- **Cell lines:** CAL51 — Homo sapiens (Human), Breast carcinoma, Cancer cell line (CVCL_1110), BJ2168 — Homo sapiens (Human), Transformed cell line (CVCL_F058)

## Full text

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## Figures

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## References

70 references — full list in the complete paper: https://tomesphere.com/paper/PMC12935053/full.md

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Source: https://tomesphere.com/paper/PMC12935053