# Macrophages From Latently Infected Mice Have Trained Immunity to HSV-1

**Authors:** Ujjaldeep Jaggi, Shaohui Wang, Satoshi Hirose, Deepak Arya, Homayon Ghiasi

PMC · DOI: 10.1167/iovs.67.2.49 · Investigative Ophthalmology & Visual Science · 2026-02-24

## TL;DR

This study shows that macrophages from mice with latent HSV-1 infection develop long-term trained immunity, marked by increased IRGM1 expression.

## Contribution

The study identifies IRGM1 as a key marker of durable macrophage immunological memory following HSV-1 infection.

## Key findings

- Macrophages from latently HSV-1-infected mice show elevated IRGM1 expression after stimulation.
- ATAC-seq reveals chromatin accessibility changes in macrophages consistent with trained immunity.
- Elevated IRGM1+ macrophages are found in multiple tissues of latently infected mice compared to controls.

## Abstract

Our previous studies demonstrated that macrophages play a crucial role in both primary and latent herpes simplex virus 1 (HSV-1) infections. Here, we sought to determine whether HSV-1 exposure induces long-lasting functional and epigenetic changes in macrophages consistent with trained immunity, leading to enhanced responses upon secondary stimulation.

To explore this, we performed Assay for Transposase-Accessible Chromatin sequencing (ATAC-seq) analysis on isolated spleen- and bone marrow (BM)-derived macrophages from latently infected mice before and after stimulation with UV-inactivated virus to identify open chromatin regions indicative of changes in gene regulation. Additionally, we performed flow cytometric analysis of infected spleen macrophages, BM-derived macrophages, corneas, and the trigeminal ganglia (TG). Moreover, to assess the durability of training response to infection, we evaluated responses after secondary infection.

The study revealed that immunity-related GTPase family M protein (IRGM1) expression in isolated macrophages from latently infected mice was significantly elevated after stimulation, compared with that of more than 900 genes with open or closed chromatin accessibility. Flow cytometry further confirmed a higher proportion of IRGM1+ macrophages in the spleen, BM, cornea, and the TG of latently infected mice compared with mock-infected controls. The qRT-PCR determined that macrophages isolated from the spleen, trigeminal ganglia, and BM of latently infected mice continued to exhibit elevated IRGM1 expression levels relative to controls.

Collectively, our findings indicate that macrophages develop a durable trained immunity to HSV-1 infection, with IRGM1 emerging as a key component in the long-term maintenance of macrophage immunological memory.

## Linked entities

- **Genes:** IRGM (immunity related GTPase M) [NCBI Gene 345611]
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, PTPRC (protein tyrosine phosphatase receptor type C) [NCBI Gene 5788] {aka B220, CD45, CD45R, GP180, IMD105, L-CA}, Ly6g (lymphocyte antigen 6 family member G) [NCBI Gene 546644] {aka Gr-1, Gr1, Ly-6G}, Apc (APC, WNT signaling pathway regulator) [NCBI Gene 11789] {aka CC1, Min, mAPC}, Itgam (integrin alpha M) [NCBI Gene 16409] {aka CD11b/CD18, CR3, CR3A, Cd11b, F730045J24Rik, Ly-40}, IRGM (immunity related GTPase M) [NCBI Gene 345611] {aka IBD19, IFI1, IRGM1, LRG-47, LRG47}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, Dnase1 (deoxyribonuclease I) [NCBI Gene 13419] {aka DNaseI, Dnl1}, Cd247 (CD247 antigen) [NCBI Gene 12503] {aka 4930549J05Rik, A430104F18Rik, Cd3, Cd3-eta, Cd3-zeta, Cd3h}, Cd19 (CD19 antigen) [NCBI Gene 12478], CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, ITGAX (integrin subunit alpha X) [NCBI Gene 3687] {aka CD11C, SLEB6}, Irgm1 (immunity-related GTPase family M member 1) [NCBI Gene 15944] {aka Ifggd3, Ifi1, Iigp3, Iipg3, Irgm}, ITGAM (integrin subunit alpha M) [NCBI Gene 3684] {aka CD11B, CR3A, HNA-4, MAC-1, MAC1A, MO1A}, BECN1 (beclin 1) [NCBI Gene 8678] {aka ATG6, VPS30, beclin1}, Ptprc (protein tyrosine phosphatase receptor type C) [NCBI Gene 19264] {aka B220, CD45R, Cd45, L-CA, Ly-5, Lyt-4}, CD19 (CD19 molecule) [NCBI Gene 930] {aka B4, CVID3}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, Serinc3 (serine incorporator 3) [NCBI Gene 26943] {aka AIGP1, DIFF33, TMS-1, Tde1}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}
- **Diseases:** inflammation (MESH:D007249), neuroinflammation (MESH:D000090862), TG (MESH:D020433), tumor (MESH:D009369), viral infections (MESH:D014777), HSK (MESH:D016849), ocular infection (MESH:D015817), ulcers (MESH:D014456), HSV-1 (MESH:D006561), infected (MESH:D007239), Mycobacterium tuberculosis (M. tuberculosis) infection (MESH:D014376), neuronal death (MESH:D009410), inflammatory cytokine (MESH:D000080424), bacterial infections (MESH:D001424), infectious diseases (MESH:D003141), HSV infection (MESH:C536395), corneal scarring (MESH:D065306), ocular disease (MESH:D005128)
- **Chemicals:** 7-AAD (MESH:C025942), FITC (MESH:D016650), SDS (MESH:D012967), Alexa Fluor 647 (MESH:C569686), F4/80 (-), PBS (MESH:D007854)
- **Species:** Human alphaherpesvirus 1 (Herpes simplex virus type 1, no rank) [taxon 10298], Mus musculus (house mouse, species) [taxon 10090], Salmonella enterica subsp. enterica serovar Typhimurium (no rank) [taxon 90371], Toxoplasma gondii (species) [taxon 5811], Listeria monocytogenes (species) [taxon 1639], Murid betaherpesvirus 1 (Murine cytomegalovirus, no rank) [taxon 10366], Homo sapiens (human, species) [taxon 9606], Mycobacterium tuberculosis (species) [taxon 1773]
- **Cell lines:** /6 — Homo sapiens (Human), Tongue squamous cell carcinoma, Cancer cell line (CVCL_5985)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12934525/full.md

## References

67 references — full list in the complete paper: https://tomesphere.com/paper/PMC12934525/full.md

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Source: https://tomesphere.com/paper/PMC12934525