# Microautophagy: current understanding of its molecular mechanisms and functions

**Authors:** Yasuyoshi Sakai, Christian Behrends, Jayanta Debnath, Masanori Izumi, Andreas Jenny, Maurizio Molinari, Shuhei Nakamura, Masahide Oku, Marisa S. Otegui, Laura Santambrogio, Han-Ming Shen, Tomohiko Taguchi, Michael Thumm, Takashi Ushimaru, Zhiping Xie, Ana Maria Cuervo, Fulvio Reggiori

PMC · DOI: 10.1080/27694127.2026.2626661 · Autophagy Reports · 2026-02-24

## TL;DR

This paper reviews what is known about microautophagy, a process where cells break down materials using specialized membrane structures.

## Contribution

The paper provides a comprehensive overview of recent advances in understanding the molecular mechanisms of microautophagy.

## Key findings

- Microautophagy involves invagination or protrusion of endolysosomal membranes.
- The molecular mechanisms of microautophagy remain largely unknown compared to macroautophagy.
- The paper summarizes current knowledge of microautophagy across different eukaryotic cells.

## Abstract

Microautophagy (MI-autophagy) is an umbrella term for intracellular degradative pathways that entail the invagination or protrusion of the limiting membranes of endolysosomal compartments, that is, late endosomes and mammalian lysosomes or yeast and plant vacuoles, followed by pinching-off of the membrane into the lumen of the organelle. During these processes, the material specifically and nonspecifically targeted for degradation is sequestered within the invaginating or protuberating membrane. In contrast to macroautophagy, the molecular mechanisms underlying MI-autophagy are largely unknown due to their diversity and complexity in location, regulation and molecular machinery requirements. Here, we review recent progress in the field of MI-autophagy, describing the molecular basis and functions of the MI-autophagic pathways reported to date in eukaryotic cells, from yeast to mammalian and plant cells.

## Full-text entities

- **Genes:** WASp (WASp) [NCBI Gene 43402] {aka CG1520, D-WASP, Dm WASP, DmWASP, Dmel\CG1520, N-WASP}, TOLLIP (toll interacting protein) [NCBI Gene 54472] {aka IL-1RAcPIP}, APG5 (autophagy protein Apg5 family) [NCBI Gene 831594] {aka ATATG5, ATG5, AUTOPHAGY 5, MKP11.20, MKP11_20}, ZRT3 (Zn(2+) transporter ZRT3) [NCBI Gene 853679], Atg7 (Autophagy-related 7) [NCBI Gene 37141] {aka ATG-7, CG5489, Dmel\CG5489, atg-7, dAtg7}, GABARAP (GABA type A receptor-associated protein) [NCBI Gene 11337] {aka ATG8A, GABARAP-a, MM46}, YPQ1 (cationic amino acid transporter) [NCBI Gene 854061], TAX1BP1 (Tax1 binding protein 1) [NCBI Gene 8887] {aka CALCOCO3, T6BP, TXBP151}, CALCOCO2 (calcium binding and coiled-coil domain 2) [NCBI Gene 10241] {aka NDP52}, PHO8 (alkaline phosphatase PHO8) [NCBI Gene 852092], ATG16L1 (autophagy related 16 like 1) [NCBI Gene 55054] {aka APG16L, ATG16A, ATG16L, IBD10, WDR30}, SNF7 (ESCRT-III subunit protein SNF7) [NCBI Gene 850712] {aka DID1, RNS4, VPL5, VPS32}, STK38 (serine/threonine kinase 38) [NCBI Gene 11329] {aka NDR, NDR1}, NBR1 (NBR1 autophagy cargo receptor) [NCBI Gene 4077] {aka 1A1-3B, IAI3B, M17S2, MIG19}, DNAH8 (dynein axonemal heavy chain 8) [NCBI Gene 1769] {aka ATPase, SPGF46, hdhc9}, Hspa8 (heat shock protein family A (Hsp70) member 8) [NCBI Gene 15481] {aka 2410008N15Rik, Hsc70, Hsc71, Hsc73, Hsp73, Hspa10}, ATG13 (serine/threonine protein kinase regulatory subunit ATG13) [NCBI Gene 856315] {aka APG13}, PDCD6IP (programmed cell death 6 interacting protein) [NCBI Gene 10015] {aka AIP1, ALIX, DRIP4, HP95, MCPH29}, Sgt (small glutamine-rich tetratricopeptide containing protein) [NCBI Gene 35052] {aka CG5094, Dmel\CG5094, dsgt}, FUT3 (fucosyltransferase 3 (Lewis blood group)) [NCBI Gene 2525] {aka CD174, FT3B, FucT-III, LE, Les}, ATG14 (autophagy related 14) [NCBI Gene 22863] {aka ATG14L, BARKOR, KIAA0831}, ATG5 (Atg5p) [NCBI Gene 855954] {aka APG5}, Rala (Ras like proto-oncogene A) [NCBI Gene 56044] {aka 3010001O15Rik, Ral, Rasl1}, ATG4B (autophagy related 4B cysteine peptidase) [NCBI Gene 23192] {aka APG4B, AUTL1, HsAPG4B}, MAP1LC3B (microtubule associated protein 1 light chain 3 beta) [NCBI Gene 81631] {aka ATG8F, LC3B, MAP1A/1BLC3, MAP1LC3B-a}, EMILIN1 (elastin microfibril interfacer 1) [NCBI Gene 11117] {aka ATBFS, EMI, EMILIN, HMN10, HMND10, gp115}, CCPG1 (cell cycle progression 1) [NCBI Gene 9236] {aka CPR8}, VAC8 (protein anchor VAC8) [NCBI Gene 856702] {aka YEB3}, RHOT1 (ras homolog family member T1) [NCBI Gene 55288] {aka ARHT1, MIRO-1, MIRO1}, ATP2A1 (ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1) [NCBI Gene 487] {aka ATP2A, SERCA1}, YCF1 (ATP-binding cassette glutathione S-conjugate transporter YCF1) [NCBI Gene 851713], VPS4 (AAA family ATPase VPS4) [NCBI Gene 856303] {aka CSC1, DID6, END13, GRD13, VPL4, VPT10}, SSH4 (Ssh4p) [NCBI Gene 853735] {aka MLF4}, DNAJC5 (DnaJ heat shock protein family (Hsp40) member C5) [NCBI Gene 80331] {aka CLN4, CLN4B, CSP, DNAJC5A, mir-941-2, mir-941-3}, SERINC5 (serine incorporator 5) [NCBI Gene 256987] {aka C5orf12, TPO1}, ATG29 (Atg29p) [NCBI Gene 855937], UBAP1 (ubiquitin associated protein 1) [NCBI Gene 51271] {aka NAG20, SPG80, UAP, UBAP, UBAP-1}, FET5 (ferroxidase FET5) [NCBI Gene 850502], ATG13 (autophagy related 13) [NCBI Gene 9776] {aka KIAA0652, PARATARG8}, GEM1 (ERMES complex Ca(2+)-binding regulatory GTPase GEM1) [NCBI Gene 851249] {aka GON1}, VPS28 (VPS28 subunit of ESCRT-I) [NCBI Gene 51160] {aka CIIA}, ATG12 [NCBI Gene 100240693], ATG1 (serine/threonine protein kinase ATG1) [NCBI Gene 852695] {aka APG1, AUT3, CVT10}, DPP1 (bifunctional diacylglycerol diphosphate phosphatase/phosphatidate phosphatase) [NCBI Gene 851878] {aka ZRG1}, PDP1 (pyruvate dehydrogenase phosphatase catalytic subunit 1) [NCBI Gene 54704] {aka PDH, PDP, PDPC, PDPC 1, PPM2A, PPM2C}, ATG2 (Atg2p) [NCBI Gene 855479] {aka APG2, AUT8, SPO72}, DNM1 (dynamin 1) [NCBI Gene 1759] {aka DEE31, DEE31A, DEE31B, DNM, EIEE31}, ATG16 (Atg16p) [NCBI Gene 855194] {aka APG15, APG16, CVT11, SAP18}, BAG6 (BAG cochaperone 6) [NCBI Gene 7917] {aka BAG-6, BAT3, D6S52E, G3}, ATG10 (E2-like conjugating enzyme) [NCBI Gene 850684] {aka APG10}, VAMP8 (vesicle associated membrane protein 8) [NCBI Gene 8673] {aka EDB, VAMP-8}, VPS30 (beclin 1) [NCBI Gene 855983] {aka APG6, ATG6, VPT30}, ATG14 (Atg14p) [NCBI Gene 852425] {aka APG14, CVT12}, ATG17 (protein kinase regulatory subunit ATG17) [NCBI Gene 851142] {aka APG17}, CHMP4B (charged multivesicular body protein 4B) [NCBI Gene 128866] {aka C20orf178, CHMP4A, CTPP3, CTRCT31, SNF7, SNF7-2}, LAPTM4A (lysosomal protein transmembrane 4 alpha) [NCBI Gene 9741] {aka HUMORF13, LAPTM4, MBNT, Mtrp}, BECN1 (beclin 1) [NCBI Gene 8678] {aka ATG6, VPS30, beclin1}, RNF152 (ring finger protein 152) [NCBI Gene 220441], VPH1 (H(+)-transporting V0 sector ATPase subunit a) [NCBI Gene 854444], G4 (UbiA prenyltransferase family protein) [NCBI Gene 824345] {aka ATG4, CHLG, PDE325, PIGMENT DEFECTIVE 325}
- **Diseases:** tauopathies (MESH:D024801), cobalt toxicity 1 (MESH:D064420), itchy E3 ubiquitin protein ligase (MESH:C573012), v (MESH:C538155), HSP (MESH:D015419), frontotemporal dementia (MESH:D057180), LDELS (MESH:D004819), e-M (MESH:C566367), amyloid (MESH:C000718787), type III UPS (MESH:C536044), Huntington disease (MESH:D006816), neurogenerative diseases (MESH:D001750), neurotoxic (MESH:D020258), osteogenesis imperfecta (MESH:D010013), l-MI (MESH:D016464), neurodegenerative diseases (MESH:D019636), inflammation (MESH:D007249), Parkinson disease (MESH:D010300), Syndrome (MESH:D013577), v-MI (MESH:C536522)
- **Chemicals:** amino acid (MESH:D000596), cGAMP (MESH:C584311), PS (MESH:D010718), carbohydrate (MESH:D002241), fatty acids (MESH:D005227), PE (MESH:C483858), AVI (-), anthocyanidins (MESH:D000872), hydrogen (MESH:D006859), lysine (MESH:D008239), plasmalogen (MESH:D010955), auxin (MESH:D007210), calcium (MESH:D002118), ROS (MESH:D017382), glucose (MESH:D005947), GW4869 (MESH:C468773), flavonoid (MESH:D005419), Carbon dioxide (MESH:D002245), ATP (MESH:D000255), sterol (MESH:D013261), lipid (MESH:D008055), CPA (MESH:C000543), PtdIns(3,5)P2 (MESH:C106336), nitrogen (MESH:D009584), ammonium (MESH:D064751), rapamycin (MESH:D020123), triglycerides (MESH:D014280), GTP (MESH:D006160), oxygen (MESH:D010100), zinc (MESH:D015032), sugar (MESH:D000073893), phosphate (MESH:D010710), phosphoinositides (MESH:D010716), U18666A (MESH:C006261), lysobisphosphatidic acid (MESH:C012786), B (MESH:D001895), ceramides (MESH:D002518), ethanol (MESH:D000431), phenobarbital (MESH:D010634), phospholipid (MESH:D010743), water (MESH:D014867), PtdIns3P (MESH:C055525), iron (MESH:D007501)
- **Species:** Rattus norvegicus (brown rat, species) [taxon 10116], Homo sapiens (human, species) [taxon 9606], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Drosophila melanogaster (fruit fly, species) [taxon 7227], Oryctolagus cuniculus (domestic rabbit, species) [taxon 9986], Murine leukemia virus (no rank) [taxon 11786], Mus musculus (house mouse, species) [taxon 10090], Caenorhabditis elegans (species) [taxon 6239], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Lipomyces okinawensis (species) [taxon 1930690], Canis lupus familiaris (dog, subspecies) [taxon 9615], Schizosaccharomyces pombe (fission yeast, species) [taxon 4896], C. elegans [taxon 328850], Nicotiana tabacum (American tobacco, species) [taxon 4097], Komagataella phaffii (species) [taxon 460519], Komagataella pastoris (species) [taxon 4922]
- **Mutations:** A53T, ATG9A, glycine to cysteine substitution at position 610, P301L, serine/threonine

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12934144/full.md

## References

216 references — full list in the complete paper: https://tomesphere.com/paper/PMC12934144/full.md

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Source: https://tomesphere.com/paper/PMC12934144