# C9orf72-ALS mutation drives basal mitophagy impairments in iNeurons

**Authors:** James A. K. Lee, Chloe Moutin, Sarah Granger, Katie Roome, Allan Shaw, Scott P. Allen, Laura Ferraiuolo, Pamela J. Shaw, Heather Mortiboys

PMC · DOI: 10.3389/fncel.2026.1731669 · Frontiers in Cellular Neuroscience · 2026-02-11

## TL;DR

This study shows that a common ALS mutation disrupts mitochondrial health in neurons by impairing autophagy, a key cellular cleanup process.

## Contribution

The study identifies a novel mechanism of autophagosome production impairment in C9orf72-ALS patient neurons, linking it to mitophagy deficits.

## Key findings

- C9orf72-ALS patient iNeurons have reduced mitochondrial membrane potential and basal mitophagy.
- Impaired autophagosome production and ULK1 recruitment to mitochondria contribute to mitophagy deficits.
- PINK1/Parkin and BNIP3 mitophagy pathways remain largely unaffected in these patient neurons.

## Abstract

ALS is a neurodegenerative disorder characterized by progressive upper and lower motor neuron loss. A GGGGCC hexanucleotide repeat expansion (HRE) in the C9orf72 gene is the most common mutation found in populations of European descent. Mitochondrial dysfunction has been observed in C9orf72-ALS patients and models of the disease, however, reports on mitochondrial clearance via mitophagy in C9orf72-ALS are limited.

iNeurons from C9orf72-ALS patients displayed reduced mitochondrial membrane potential and reduced basal mitophagy, due to reductions in autophagosome production and reduced ULK1 recruitment to mitochondria. No consistent changes to PINK1/Parkin or BNIP3 mitophagy pathways were observed.

Our data show that certain aspects of mitochondrial function is impaired in C9orf72-ALS patient iNeurons. An in-depth characterization of mitophagy suggests that a deficit in autophagosome production is responsible and provides further evidence that toxic gain-of-function mechanisms in C9orf72-ALS are responsible for autophagy deficits.

## Linked entities

- **Genes:** C9orf72 (C9orf72-SMCR8 complex subunit) [NCBI Gene 203228]
- **Proteins:** ULK1 (unc-51 like autophagy activating kinase 1), PINK1 (PTEN induced kinase 1), park (parkin), BNIP3 (BCL2 interacting protein 3)
- **Diseases:** ALS (MONDO:0004976)

## Full-text entities

- **Genes:** FN1 (fibronectin 1) [NCBI Gene 2335] {aka CIG, ED-B, FINC, FN, FNZ, GFND}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, SMCR8 (SMCR8-C9orf72 complex subunit) [NCBI Gene 140775] {aka DENND8A}, BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596] {aka Bcl-2, PPP1R50}, CALCOCO2 (calcium binding and coiled-coil domain 2) [NCBI Gene 10241] {aka NDP52}, NUP62 (nucleoporin 62) [NCBI Gene 23636] {aka IBSN, SNDI, p62}, SOD1 (superoxide dismutase 1) [NCBI Gene 6647] {aka ALS, ALS1, HEL-S-44, IPOA, SOD, STAHP}, BECN1 (beclin 1) [NCBI Gene 8678] {aka ATG6, VPS30, beclin1}, TARDBP (TAR DNA binding protein) [NCBI Gene 23435] {aka ALS10, TDP-43}, MAP2 (microtubule associated protein 2) [NCBI Gene 4133] {aka MAP-2, MAP2A, MAP2B, MAP2C}, RBFOX3 (RNA binding fox-1 homolog 3) [NCBI Gene 146713] {aka FOX-3, FOX3, HRNBP3, NEUN}, C9orf72 (C9orf72-SMCR8 complex subunit) [NCBI Gene 203228] {aka ALSFTD, DENND9, DENNL72, FTDALS, FTDALS1}, PRKN (parkin RBR E3 ubiquitin protein ligase) [NCBI Gene 5071] {aka AR-JP, LPRS2, PARK2, PDJ}, BNIP3L (BCL2 interacting protein 3 like) [NCBI Gene 665] {aka BNIP3a, NIP3L, NIX}, PIK3C3 (phosphatidylinositol 3-kinase catalytic subunit type 3) [NCBI Gene 5289] {aka VPS34, Vps34, hVps34}, ULK1 (unc-51 like autophagy activating kinase 1) [NCBI Gene 8408] {aka ATG1, ATG1A, UNC51, Unc51.1, hATG1}, HSPD1 (heat shock protein family D (Hsp60) member 1) [NCBI Gene 3329] {aka CPN60, GROEL, HLD4, HSP-60, HSP60, HSP65}, RAN (RAN, member RAS oncogene family) [NCBI Gene 5901] {aka ARA24, Gsp1, TC4}, LAMP2 (lysosome associated membrane protein 2) [NCBI Gene 3920] {aka CD107b, DND, LAMP-2, LAMPB, LGP-96, LGP110}, PINK1 (PTEN induced kinase 1) [NCBI Gene 65018] {aka BRPK, PARK6}, BNIP3 (BCL2 interacting protein 3) [NCBI Gene 664] {aka HABON, NIP3}, PRKAB1 (protein kinase AMP-activated non-catalytic subunit beta 1) [NCBI Gene 5564] {aka AMPK, HAMPKb}, TOMM20 (translocase of outer mitochondrial membrane 20) [NCBI Gene 9804] {aka MAS20, MOM19, TOM20}, FUS (FUS RNA binding protein) [NCBI Gene 2521] {aka ALS6, ETM4, FUS1, HNRNPP2, POMP75, TLS}, MAP1LC3A (microtubule associated protein 1 light chain 3 alpha) [NCBI Gene 84557] {aka ATG8E, LC3, LC3A, MAP1ALC3, MAP1BLC3}
- **Diseases:** Amyotrophic lateral sclerosis (MESH:D000690), death (MESH:D003643), neuron loss (MESH:D009410), sALS (MESH:C531617), ALS (MESH:D008113), neurodegeneration (MESH:D019636), Deficits in mitochondrial function (MESH:D028361), muscle weakness (MESH:D018908), motor neuron disease (MESH:D016472), paralysis (MESH:D010243), Autophagosome deficit (MESH:D009461), hypoxia (MESH:D000860)
- **Chemicals:** Alexa (-), retinoic acid (MESH:D014212), Nilotinib (MESH:C498826), Forskolin (MESH:D005576), ATP (MESH:D000255), rotenone (MESH:D012402), CO2 (MESH:D002245), Antimycin A (MESH:D000968), agarose (MESH:D012685), PBS (MESH:D007854), Tween (MESH:D011136), CSPD (MESH:C071872), PVDF (MESH:C024865), glucose (MESH:D005947), DMSO (MESH:D004121), oligomycin (MESH:D009840), ROS (MESH:D017382), chloroquine (MESH:D002738), nylon (MESH:D009757), NaCl (MESH:D012965), PR (MESH:D011221), oxygen (MESH:D010100), DFP (MESH:D000077543), F12 (MESH:C007782), CCCP (MESH:D002258), N2 (MESH:D009584), 2-deoxyglucose (MESH:D003847), Triton X-100 (MESH:D017830), Rapamycin (MESH:D020123), polyacrylamide (MESH:C016679), A769662 (MESH:C512408), water (MESH:D014867), TMRM (MESH:C401833), iron (MESH:D007501), Laemmli buffer (MESH:C088816), bafilomycin A1 (MESH:C040929), SDS (MESH:D012967), GlutaMAX (MESH:C054122), NaOH (MESH:D012972), galactose (MESH:D005690)
- **Species:** Danio rerio (leopard danio, species) [taxon 7955], Homo sapiens (human, species) [taxon 9606], Gallus gallus (bantam, species) [taxon 9031], Drosophila melanogaster (fruit fly, species) [taxon 7227], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** MEF — Mus musculus (Mouse), Finite cell line (CVCL_9115), HEK293T — Homo sapiens (Human), Transformed cell line (CVCL_0063)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12933941/full.md

## References

50 references — full list in the complete paper: https://tomesphere.com/paper/PMC12933941/full.md

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Source: https://tomesphere.com/paper/PMC12933941