# P450 engineering via structure-guided rational design achieves high C21-selectivity and bioconversion in steroid biosynthesis

**Authors:** Jian Yang, Rong Li, Qilin Gao, Li Ma, Qiang Wang, Guiying Ma, Yikang Fan, Shengying Li, Lian-Hua Xu

PMC · DOI: 10.1016/j.synbio.2026.01.034 · Synthetic and Systems Biotechnology · 2026-02-18

## TL;DR

Scientists engineered a P450 enzyme to efficiently convert steroids with high selectivity for C21-hydroxylation, improving steroid biosynthesis.

## Contribution

A structure-guided approach created a P450 variant with 98% C21 selectivity and high conversion efficiency for steroid hydroxylation.

## Key findings

- The engineered M6a variant achieved 98% C21 hydroxylation selectivity and >99% conversion of progesterone.
- The redox fusion variant M6a-RhFRED L3 improved catalytic activity by 1.43-fold compared to the original.
- M6a-RhFRED L3 efficiently hydroxylated three steroid analogs with >60% conversion and 98% selectivity.

## Abstract

C21-hydroxylation is a crucial step in the synthesis of corticosteroids. For instance, C21-hydroxylase catalyzes the conversion of progesterone (PRO) into 11-deoxycorticosterone (DOC, the precursor of cortisol and aldosterone). Through structure-guided rational design combined with focused rational iterative site-directed mutagenesis (FRISM), we engineered the wild-type CYP154C5 from Nocardia farcinica to obtain the highly efficient variant M6a (F92A/V291L/L294I/Q239K/F180W/Q398M). This variant demonstrated a complete regioselectivity shift from C16α to C21 hydroxylation (98% selectivity) of PRO with high catalytic efficiency (>99% conversion). To further enhance catalytic performance, we engineered a redox fusion variant (M6a-RhFRED L3) that demonstrated the highest catalytic activity, achieving a 1.43-fold improvement compared to the M6a-RhFRED. Additionally, M6a-RhFRED L3 catalyzed the C21-hydroxylation of three steroid analogs (dydrogesterone, 16-dehydroprogesterone, and pregna-4,6-diene-3,20-dione), with selectivity reaching 98% and conversion rates exceeding 60%. Molecular docking and molecular dynamics (MD) simulations revealed that the PRO substrate undergoes conformational rearrangement in the M6a active site. This structural reorganization underscores the critical role of key residues in modulating regioselectivity, particularly the shift from C16α to C21 hydroxylation. This study not only provides an efficient biocatalyst for steroids C21-hydroxylation but also offers valuable insight for the rational engineering of the P450 enzymes.

## Linked entities

- **Proteins:** GPM6A (glycoprotein M6A)
- **Chemicals:** progesterone (PubChem CID 5994), 11-deoxycorticosterone (PubChem CID 6166), dydrogesterone (PubChem CID 9051), 16-dehydroprogesterone (PubChem CID 101964), pregna-4,6-diene-3,20-dione (PubChem CID 101994)
- **Species:** Nocardia farcinica (taxon 37329)

## Full-text entities

- **Genes:** CYP21A2 (cytochrome P450 family 21 subfamily A member 2) [NCBI Gene 1589] {aka CA21H, CAH1, CPS1, CYP21, CYP21B, P450c21B}
- **Diseases:** asthma (MESH:D001249), WT (MESH:D009396), arthritis (MESH:D001168), autoimmune diseases (MESH:D001327)
- **Chemicals:** heme (MESH:D006418), amino acid (MESH:D000596), vitamin D3 (MESH:D002762), cortisol (MESH:D006854), CO (MESH:D002248), 5-ALA (MESH:D000622), C (MESH:D002244), Dydrogesterone (MESH:D004394), aldosterone (MESH:D000450), prednisolone (MESH:D011239), methanol (MESH:D000432), ethyl acetate (MESH:C007650), 16-Dehydroprogesterone (MESH:C028106), 25-hydroxyvitamin D3 (MESH:D002112), 21-hydroxy-16-dehydroprogesterone (-), oxygen (MESH:D010100), Na+ (MESH:D012964), phosphate (MESH:D010710), 17alpha-hydroxyprogesterone (MESH:D019326), H (MESH:D006859), PRO (MESH:D011374), 11-deoxycortisol (MESH:D003350), 1alpha,25-dihydroxyvitamin D3 (MESH:D002117), C21 (MESH:C000711730), 13C (MESH:C000615229), kanamycin (MESH:D007612), glucose (MESH:D005947), Steroid (MESH:D013256), IPTG (MESH:D007544), M6a (MESH:C005955), water (MESH:D014867), HP-beta-CD (MESH:D000073738), Pdx (MESH:C418863), 11-deoxycorticosterone (MESH:D003900), testosterone (MESH:D013739), iron (MESH:D007501)
- **Species:** Pseudonocardia autotrophica (species) [taxon 2074], Homo sapiens (human, species) [taxon 9606], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Escherichia coli BL21(DE3) (strain) [taxon 469008], Escherichia coli (E. coli, species) [taxon 562], Pseudonocardia dioxanivorans [taxon 240495], Priestia megaterium (species) [taxon 1404], Streptomyces griseolus (species) [taxon 1909]
- **Mutations:** A330Y, A92, Q398K, Q398F, M398, Q398, P329A, A74G, L294Q, L294R, L294I, V291I, F180W, Q239K, V291L, V292S, Q239K, E435D, F180S, I294, L294F, Q239, F87A, V291, V291D, K239, P25A, Q398L, F180Y, F180, F180W, L294I, L291, Q239 M, S72Q, V291L, V291K, L437G, F92A, Q398M, F92, Q239R, W180, PRO at 100, Q398 M, F92A, L294
- **Cell lines:** pET28a — Oryctolagus cuniculus (Rabbit), Transformed cell line (CVCL_6E94), CB1190 — Homo sapiens (Human), Menkes disease, Finite cell line (CVCL_1L35)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12933623/full.md

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12933623/full.md

## References

45 references — full list in the complete paper: https://tomesphere.com/paper/PMC12933623/full.md

---
Source: https://tomesphere.com/paper/PMC12933623