# Repurposed Acarbose Targets Nidogen-1 to Remodel the Tumor Stroma and Suppress Portal Vein Tumor Thrombus in Hepatocellular Carcinoma

**Authors:** Tao Han, Lujun Chen, Ning Liu, Ying chen Han, Zhi Zhu, Shuyi Wang, Haoran Song, Ziming Gao, Lin Su, Qilin Hu, Linda Hammerich, Timothy M. Pawlik, Yuhan Zhang, Masatoshi Kudo, Hao Li, Lei Ma, Giorgio Valabrega, Guang Wang, Zhengqiang Yang, Qiuhua Luo, Donatella Marino, Zihang Xu, Meng Niu, Tingsong Chen, Heming Li, Kai Li

PMC · DOI: 10.34133/research.1161 · Research · 2026-02-25

## TL;DR

This study identifies a new role for acarbose in targeting tumor stroma to improve outcomes in a deadly liver cancer complication.

## Contribution

The study reveals Nidogen-1 as a stromal driver in PVTT and demonstrates acarbose repurposing to disrupt immune barriers in HCC.

## Key findings

- Nidogen-1 (NID1) is a stromal driver of immune barriers in portal vein tumor thrombus (PVTT) of HCC.
- Acarbose disrupts myCAF-mediated immune barriers and synergizes with anti-PD-1 therapy in preclinical models.
- Clinical data show lower PVTT incidence in HCC patients receiving acarbose.

## Abstract

Portal vein tumor thrombus (PVTT) is among the most lethal complications of hepatocellular carcinoma (HCC), yet its molecular mechanisms and immune features remain poorly characterized. To address this gap, we performed a comprehensive multi-omics analysis of 99 specimens from 47 patients, integrating nCounter profiling, single-cell RNA sequencing, digital spatial profiling, and proteomics to construct the first spatial map of the PVTT microenvironment. These analyses revealed marked intratumoral heterogeneity and enrichment of myofibroblast-like cancer-associated fibroblasts (myCAFs) arising through a macrophage-to-myofibroblast transition. Nidogen-1 (NID1) was identified as a stromal driver of immune barriers, highly expressed in PVTT cores and associated with impaired antitumor immunity. Guided by these mechanistic insights, we repurposed acarbose, a Food and Drug Administration-approved drug, to inhibit the NID1 axis. Functional assays demonstrated that acarbose disrupted myCAF-mediated immune barriers, suppressed PVTT progression, and synergized with anti-programmed death-1 (anti-PD-1) therapy in preclinical models. Furthermore, analysis of an independent clinical cohort of 810 HCC patients revealed a substantially lower incidence of PVTT among those receiving acarbose, underscoring its translational potential. Collectively, these findings establish the immune–stromal landscape of PVTT, uncover NID1-driven stromal remodeling as a mechanism of immune evasion, and highlight drug repurposing as an immediately actionable strategy to improve outcomes in HCC with PVTT.

## Linked entities

- **Genes:** NID1 (nidogen 1) [NCBI Gene 4811]
- **Proteins:** Nid1 (nidogen 1)
- **Chemicals:** acarbose (PubChem CID 9811704)
- **Diseases:** hepatocellular carcinoma (MONDO:0007256)

## Full-text entities

- **Genes:** PGF (placental growth factor) [NCBI Gene 5228] {aka D12S1900, PGFL, PIGF, PLGF, PlGF-2, SHGC-10760}, PTPRC (protein tyrosine phosphatase receptor type C) [NCBI Gene 5788] {aka B220, CD45, CD45R, GP180, IMD105, L-CA}, PCK2 (phosphoenolpyruvate carboxykinase 2, mitochondrial) [NCBI Gene 5106] {aka PEPCK, PEPCK-M, PEPCK2, mtPCK2}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, SOX2 (SRY-box transcription factor 2) [NCBI Gene 6657] {aka ANOP3, MCOPS3}, KDR (kinase insert domain receptor) [NCBI Gene 3791] {aka CD309, FLK1, VEGFR, VEGFR2}, FOS (Fos proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 2353] {aka AP-1, C-FOS, p55}, TDO2 (tryptophan 2,3-dioxygenase) [NCBI Gene 6999] {aka HYPTRP, TDO, TO, TPH2, TRPO}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, Acta2 (actin alpha 2, smooth muscle, aorta) [NCBI Gene 11475] {aka 0610041G09Rik, Actvs, SMAalpha, SMalphaA, a-SMA, alphaSMA}, CXCR3 (C-X-C motif chemokine receptor 3) [NCBI Gene 2833] {aka CD182, CD183, CKR-L2, CMKAR3, GPR9, IP10-R}, SPP1 (secreted phosphoprotein 1) [NCBI Gene 6696] {aka BNSP, BSPI, ETA-1, OPN}, SI (sucrase-isomaltase) [NCBI Gene 6476], ID2 (inhibitor of DNA binding 2) [NCBI Gene 3398] {aka GIG8, ID2A, ID2H, bHLHb26}, PDCD1 (programmed cell death 1) [NCBI Gene 5133] {aka ADMIO4, AIMTBS, CD279, PD-1, PD1, SLEB2}, LIF (LIF interleukin 6 family cytokine) [NCBI Gene 3976] {aka CDF, DIA, HILDA, MLPLI}, CCL2 (C-C motif chemokine ligand 2) [NCBI Gene 6347] {aka GDCF-2, HC11, HSMCR30, MCAF, MCP-1, MCP1}, HCC [NCBI Gene 619501], KLF4 (KLF transcription factor 4) [NCBI Gene 9314] {aka EZF, GKLF}, Cd68 (CD68 antigen) [NCBI Gene 12514] {aka Lamp4, Scard1, gp110}, CD68 (CD68 molecule) [NCBI Gene 968] {aka GP110, LAMP4, SCARD1}, KAT2B (lysine acetyltransferase 2B) [NCBI Gene 8850] {aka CAF, P/CAF, PCAF}, ID3 (inhibitor of DNA binding 3) [NCBI Gene 3399] {aka HEIR-1, bHLHb25}, ACTA2 (actin alpha 2, smooth muscle) [NCBI Gene 59] {aka ACTSA, SMDYS}, Nid1 (nidogen 1) [NCBI Gene 18073] {aka A630025O17, Nid, entactin, entactin-1, nidogen-1}, CXCL8 (C-X-C motif chemokine ligand 8) [NCBI Gene 3576] {aka GCP-1, GCP1, IL8, LECT, LUCT, LYNAP}, ACTA1 (actin alpha 1, skeletal muscle) [NCBI Gene 58] {aka ACTA, ASMA, CFTD, CFTD1, CFTDM, CMYO2A}, LAMC2 (laminin subunit gamma 2) [NCBI Gene 3918] {aka B2T, BM600, CSF, EBR2, EBR2A, JEB3A}, EZH2 (enhancer of zeste 2 polycomb repressive complex 2 subunit) [NCBI Gene 2146] {aka ENX-1, ENX1, EZH2b, KMT6, KMT6A, WVS}, IL12B (interleukin 12B) [NCBI Gene 3593] {aka CLMF, CLMF2, IL-12B, IMD28, IMD29, NKSF}, ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064] {aka CD340, HER-2, HER-2/neu, HER2, MLN 19, MLN-19}, APOE (apolipoprotein E) [NCBI Gene 348] {aka AD2, APO-E, ApoE4, LDLCQ5, LPG}, HCFC1 (host cell factor C1) [NCBI Gene 3054] {aka CFF, HCF, HCF-1, HCF1, HFC1, MAHCX}, HGF (hepatocyte growth factor) [NCBI Gene 3082] {aka DFNB39, F-TCF, HGFB, HPTA, SF}, LTB (lymphotoxin beta) [NCBI Gene 4050] {aka TNFC, TNFSF3, TNLG1C, p33}, CCL3 (C-C motif chemokine ligand 3) [NCBI Gene 6348] {aka G0S19-1, LD78, LD78ALPHA, MIP-1-alpha, MIP1A, SCI}, ID1 (inhibitor of DNA binding 1) [NCBI Gene 3397] {aka ID, bHLHb24}, Pdcd1 (programmed cell death 1) [NCBI Gene 18566] {aka Ly101, PD-1, Pdc1}, YAP1 (Yes1 associated transcriptional regulator) [NCBI Gene 10413] {aka COB1, YAP, YAP-1, YAP2, YAP65, YKI}, AFP (alpha fetoprotein) [NCBI Gene 174] {aka AFPD, FETA, HPAFP}, S100A1 (S100 calcium binding protein A1) [NCBI Gene 6271] {aka S100, S100-alpha, S100A}, PDC (phosducin) [NCBI Gene 5132] {aka MEKA, PHD, PhLOP, PhLP}, OSTC (oligosaccharyltransferase complex non-catalytic subunit) [NCBI Gene 58505] {aka DC2}, CXCL10 (C-X-C motif chemokine ligand 10) [NCBI Gene 3627] {aka C7, IFI10, INP10, IP-10, SCYB10, crg-2}, PDGFB (platelet derived growth factor subunit B) [NCBI Gene 5155] {aka IBGC5, PDGF-2, PDGF2, SIS, SSV, c-sis}, CSF1 (colony stimulating factor 1) [NCBI Gene 1435] {aka CSF-1, MCSF, PG-M-CSF}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, NANOG (Nanog homeobox) [NCBI Gene 79923], MMP7 (matrix metallopeptidase 7) [NCBI Gene 4316] {aka MMP-7, MPSL1, PUMP-1}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, TAGLN (transgelin) [NCBI Gene 6876] {aka SM22, SM22-alpha, SMCC, TAGLN1, TGLN, WS3-10}, MARCO (macrophage receptor with collagenous structure) [NCBI Gene 8685] {aka SCARA2, SR-A6}, ITGAM (integrin subunit alpha M) [NCBI Gene 3684] {aka CD11B, CR3A, HNA-4, MAC-1, MAC1A, MO1A}, NID1 (nidogen 1) [NCBI Gene 4811] {aka NID}, LMO2 (LIM domain only 2) [NCBI Gene 4005] {aka LMO-2, RBTN2, RBTNL1, RHOM2, TTG2}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, MMP12 (matrix metallopeptidase 12) [NCBI Gene 4321] {aka HME, ME, MME, MMP-12}, TNFSF14 (TNF superfamily member 14) [NCBI Gene 8740] {aka CD258, HVEML, LIGHT, LTg}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}
- **Diseases:** PD (MESH:D010300), fibrotic diseases (MESH:D004194), cirrhosis (MESH:D005355), lung, renal, and prostate cancers (MESH:D011471), liver fibrosis (MESH:D008103), DM (MESH:D009223), hepatitis B virus infection (MESH:D006509), lung recurrence (MESH:D008171), SD (MESH:D012735), diabetes (MESH:D003920), HCC malignancy (MESH:D009369), tumorigenesis (MESH:D063646), postoperative analgesia (MESH:D000699), AOIs (MESH:D001927), death (MESH:D003643), PVTT (MESH:D013927), liver metastasis (MESH:D009362), MMT (MESH:D055501), cytotoxicity (MESH:D064420), P (MESH:D002972), T (MESH:D001260), pulmonary fibrosis (MESH:D011658), renal disease (MESH:D007674), VP (MESH:D046350), -19 (MESH:D000094024), solid (MESH:D018250), HCC- (MESH:D006528)
- **Chemicals:** ammonia (MESH:D000641), O (MESH:D010100), formazan (MESH:D005562), paraffin (MESH:D010232), streptomycin (MESH:D013307), xylene (MESH:D014992), EDTA (MESH:D004492), N (MESH:D009584), PMA (MESH:D013755), isoflurane (MESH:D007530), tislelizumab (MESH:C000707970), N-hydroxysuccinimide (MESH:C001426), metformin (MESH:D008687), ethanol (MESH:D000431), blood glucose (MESH:D001786), glycine-HCl (MESH:D005998), biotin (MESH:D001710), SYTO 13 (MESH:C461159), penicillin (MESH:D010406), hematoxylin (MESH:D006416), Acarbose (MESH:D020909), Bio (-), ethanolamine (MESH:D019856), H&amp;E (MESH:D006371), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MESH:C022616), amine (MESH:D000588), carbohydrate (MESH:D002241), MTT (MESH:C070243), lenvatinib (MESH:C531958), bicinchoninic acid (MESH:C047117), formalin (MESH:D005557), glucose (MESH:D005947), dimethyl sulfoxide (MESH:D004121), 4',6-diamidino-2-phenylindole (MESH:C007293), ethyldimethylaminopropyl carbodiimide (MESH:D005022), sodium acetate (MESH:D019346), buprenorphine (MESH:D002047), tryptophan (MESH:D014364), polyvinylidene fluoride (MESH:C024865), H (MESH:D006859)
- **Species:** hepatitis C virus [taxon 11103], Mus musculus (house mouse, species) [taxon 10090], Hepatitis B virus (no rank) [taxon 10407], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** E to H, L035P, L001P
- **Cell lines:** MMT — Homo sapiens (Human), Prostate carcinoma, Telomerase immortalized cell line (CVCL_UZ16), HepG2 — Homo sapiens (Human), Hepatoblastoma, Cancer cell line (CVCL_0027), CSQT2 — Homo sapiens (Human), Adult hepatocellular carcinoma, Cancer cell line (CVCL_M183), Lenti — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_A4EW), T — Homo sapiens (Human), Esophageal squamous cell carcinoma, Cancer cell line (CVCL_3174), Hep3B — Homo sapiens (Human), Childhood hepatocellular carcinoma, Cancer cell line (CVCL_0326), THP-1 — Homo sapiens (Human), Childhood acute monocytic leukemia, Cancer cell line (CVCL_0006), Huh7 — Homo sapiens (Human), Adult hepatocellular carcinoma, Cancer cell line (CVCL_0336), Hep53.4 — Mus musculus (Mouse), Hepatocellular carcinoma of the mouse, Cancer cell line (CVCL_5765), C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU), M0 — Homo sapiens (Human), Familial hypertrophic cardiomyopathy type 26, Induced pluripotent stem cell (CVCL_A6XE)

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## Figures

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## References

59 references — full list in the complete paper: https://tomesphere.com/paper/PMC12932938/full.md

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Source: https://tomesphere.com/paper/PMC12932938