# A red/blue optoswitch for temporal control of chloroplast transcription and biogenesis in Arabidopsis

**Authors:** Finia Uecker, Frederik M. Ahrens, Tim Ruder, Thomas Pfannschmidt

PMC · DOI: 10.1038/s41467-026-69626-3 · Nature Communications · 2026-02-20

## TL;DR

Scientists created a light-controlled switch to restore chloroplast development in a mutant plant, revealing new insights into plant biology.

## Contribution

A red/blue optoswitch is developed to control chloroplast transcription and biogenesis in Arabidopsis.

## Key findings

- A blue-light-induced PAP7 construct rescues non-viable albino mutants by restoring PEP activity.
- Chloroplast biogenesis is only inducible in very young leaf tissues.
- Initial PEP formation and function are independent of photosynthesis.

## Abstract

Photosynthesis genes in plant chloroplasts are transcribed by the plastid-encoded RNA polymerase called PEP. Consequently, PEP-deficient mutants cannot generate a photosynthetic apparatus and develop non-viable albino seedlings. Inducible complementation of such mutants thus could provide interesting insights in PEP action and chloroplast biogenesis. Here we show the effects of photo-inducible complementation in the albino Arabidopsis mutant pap7-1 using a red/blue optoswitch with monochromatic LEDs. Expression of a blue-light-induced PAP7 construct that is silent under red light reconstitutes PEP at any time point of pap7-1 development resulting in proper chloroplast biogenesis that rescues the non-viable mutant. Induction of chloroplast biogenesis, however, can only occur in very young leaf tissues indicating the existence of a cell-autonomous, biogenic coupling between cell and organelle development. We further uncover that initial PEP formation and function is independent of photosynthesis. The optoswitch termed blue-light valved biogenesis opens experimental avenues to study non-viable plant mutants.

Plants require the plastid encoded RNA polymerase PEP to generate viable photosynthetic apparatus. Here the authors genetically engineer an optoswitch that enables photo-induced complementation of an albino mutant restoring transcription and chloroplast biogenesis on demand.

## Linked entities

- **Genes:** ACBD3 (acyl-CoA binding domain containing 3) [NCBI Gene 64746]
- **Proteins:** PAEP (progestagen associated endometrial protein)
- **Species:** Arabidopsis (taxon 3701)

## Full-text entities

- **Genes:** PAP10 (purple acid phosphatase 10) [NCBI Gene 816141] {aka ATPAP10, F16F14.7, F16F14_7, purple acid phosphatase 10}, psaB (photosystem I P700 chlorophyll a apoprotein A2) [NCBI Gene 844770], clpP (ATP-dependent Clp protease proteolytic subunit) [NCBI Gene 844734], psaJ (photosystem I subunit IX) [NCBI Gene 844738], PAP15 (purple acid phosphatase 15) [NCBI Gene 819899] {aka ATPAP15, PURPLE ACID PHOSPHATASE 15, purple acid phosphatase 15}, psbB (photosystem II 47 kDa protein) [NCBI Gene 844733], PAP6 (purple acid phosphatase 6) [NCBI Gene 842090] {aka ATPAP6, F14G9.2, F14G9_2, purple acid phosphatase 6}, atpB (ATP synthase CF1 beta subunit) [NCBI Gene 844757], accD (acetyl-CoA carboxylase beta subunit) [NCBI Gene 844755], LHCB2.2 (photosystem II light harvesting complex protein 2.2) [NCBI Gene 815055] {aka F1O13.20, F1O13_20, LHCB2, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.2}, AT4G01880 (methyltransferase) [NCBI Gene 828223] {aka T7B11.14, T7B11_14}, LHCB2.3 (photosystem II light harvesting complex protein 2.3) [NCBI Gene 822391] {aka LHCB2, LHCB2.4, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.3}, EEF1A2 (eukaryotic translation elongation factor 1 alpha 2) [NCBI Gene 1917] {aka DEE33, EEF1AL, EF-1-alpha-2, EF1A, EIEE33, HS1}, petD (cytochrome b6/f complex subunit IV) [NCBI Gene 844728], GUN1 (s uncoupled 1) [NCBI Gene 817698] {aka T28P16.11, T28P16_11, genomes uncoupled 1}, TT4 (Chalcone and stilbene synthase family protein) [NCBI Gene 831241] {aka ATCHS, CHALCONE SYNTHASE, CHALCONE/STILBENE SYNTHASE, CHS, MAC12.28, MAC12_28}, PTAC14 (plastid transcriptionally active 14) [NCBI Gene 827759] {aka F1C12.4, TAC14, plastid transcriptionally active 14}, PAP7 (purple acid phosphatase 7) [NCBI Gene 814719] {aka ATPAP7, PURPLE ACID PHOSPHATASE 7, T23K3.7, T23K3_7, purple acid phosphatase 7}, GPRI1 (GBF's pro-rich region-interacting factor 1) [NCBI Gene 816579] {aka ARABIDOPSIS GOLDEN2-LIKE 1, ATGLK1, GBF's pro-rich region-interacting factor 1, GLK1, GOLDEN2-LIKE 1, T13C7.1}, rbcL (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit) [NCBI Gene 844754], psbA (photosystem II protein D1) [NCBI Gene 844802], PAP12 (purple acid phosphatase 12) [NCBI Gene 817261] {aka ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, ATPAP1, ATPAP12, PAP1, PURPLE ACID PHOSPHATASE 1, PURPLE ACID PHOSPHATASE 12}, atpE (ATP synthase CF1 epsilon subunit) [NCBI Gene 844758], PAP8 (purple acid phosphatase 8) [NCBI Gene 814720] {aka ATPAP8, PURPLE ACID PHOSPHATASE 8, T23K3.8, T23K3_8, purple acid phosphatase 8}, psbN (photosystem II protein N) [NCBI Gene 844732], PAP5 (purple acid phosphatase 5) [NCBI Gene 841727] {aka ATPAP5, purple acid phosphatase 5}, PAP13 (purple acid phosphatase 13) [NCBI Gene 817838] {aka ATPAP13, F24L7.9, F24L7_9, PURPLE ACID PHOSPHATASE 13, purple acid phosphatase 13}, PRIN2 (Serine/Threonine-kinase) [NCBI Gene 837593] {aka PLASTID REDOX INSENSITIVE 2}, PEP (RNA-binding KH domain-containing protein) [NCBI Gene 828706] {aka F20B18.110, F20B18_110, PEPPER}
- **Diseases:** albinism (MESH:D000417)
- **Chemicals:** plastoquinone (MESH:D010971), glycerol (MESH:D005990), Chl (-), carbohydrates (MESH:D002241), sucrose (MESH:D013395), lipids (MESH:D008055), cytokinin (MESH:D003583), CO2 (MESH:D002245), Tween 20 (MESH:D011136), PVDF (MESH:C024865), sugars (MESH:D000073893), 3-(3 , 4 -dichlorophenyl)-1, 1 -dimethylurea (MESH:D004237), MgCl2 (MESH:D015636), NaCl (MESH:D012965), methanol (MESH:D000432), Chlorophyll (MESH:D002734), aminocaproic acid (MESH:D015119), CBB-G250 (MESH:C004692), agar (MESH:D000362), Triton X-100 (MESH:D017830), polyacrylamide (MESH:C016679), BisTris (MESH:C026272), carbon (MESH:D002244), nitrogen (MESH:D009584), EDTA (MESH:D004492), NaF (MESH:D012969), TRIzol (MESH:C411644), water (MESH:D014867), carotenoid (MESH:D002338), kanamycin (MESH:D007612), ethanol (MESH:D000431), acrylamide (MESH:D020106), glycine (MESH:D005998), phytochromobilin (MESH:C075811), Tricine (MESH:C100184), HCl (MESH:D006851), SDS (MESH:D012967)
- **Species:** Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Powellomyces sp. EA (species) [taxon 252690], PX clade (clade) [taxon 569578], Moloney murine leukemia virus (no rank) [taxon 11801], Agrobacterium tumefaciens (species) [taxon 358], Escherichia coli (E. coli, species) [taxon 562], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** DH5alpha — Drosophila hydei (Fruit fly), Spontaneously immortalized cell line (CVCL_Z531), BVB09 — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_VN68)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12932824/full.md

## References

7 references — full list in the complete paper: https://tomesphere.com/paper/PMC12932824/full.md

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Source: https://tomesphere.com/paper/PMC12932824