# Long noncoding RNA X-inactive-specific transcript promotes hepatic fibrosis by suppressing ferroptosis in hepatic stellate cells via the miR-663a/GPX4 axis

**Authors:** Jing Dai, Guo-Hui Zhong, Jun-Xing Yang, Xiao-Yu Tan, Dong Dai, Ming-Yi Li

PMC · DOI: 10.3389/fphys.2025.1734886 · Frontiers in Physiology · 2026-02-11

## TL;DR

This study shows that the long noncoding RNA XIST promotes liver fibrosis by preventing cell death in liver cells through a specific molecular pathway.

## Contribution

The study reveals a novel mechanism by which lncRNA-XIST regulates hepatic fibrosis via the miR-663a/GPX4 axis and ferroptosis suppression.

## Key findings

- LncRNA-XIST knockdown increased ferroptosis markers and reduced HSC activation in vitro.
- LncRNA-XIST promotes liver fibrosis in mice by suppressing ferroptosis through the miR-663a/GPX4 axis.
- Ethanol-induced activation of HSCs upregulates lncRNA-XIST in a dose- and time-dependent manner.

## Abstract

Hepatic fibrosis (HF) is a critical pathological stage in the progression of chronic liver diseases, where hepatic stellate cell (HSC) activation is a key event. Ferroptosis regulates the fate of HSCs and represents a potential anti-fibrotic target. Long non-coding RNA XIST (lncRNA-XIST) is involved in fibrosis-related diseases. This study investigated how lncRNA-XIST promotes HF by regulating ferroptosis through the microRNA-663 (miR-663a)/GPX4 axis.

LX-2 HSCs were activated using ethanol at varying concentrations for different durations to determine optimal conditions. HSCs were intervened with small interfering RNA against lncRNA-XIST, and Liproxstatin-1 was applied. RT-qPCR, Western blotting, CCK-8, colony formation, LDH release, and biochemical assays assessed gene/protein expression, cell viability, proliferation, ferroptosis markers (Fe2+, MDA, GSH), and cell death. Dual-luciferase assays validated interactions among lncRNA-XIST, miR-663a, and GPX4. In vivo, an HF mouse model was established and treated with sh-XIST or miR-663a antagonists. Liver fibrosis was evaluated by histology, immunohistochemistry, and serum liver injury markers (ALT, AST, HYP).

Ethanol promoted LX-2 activation and upregulated lncRNA-XIST in a time- and dose-dependent manner (optimal: 100 mM, 24 h). LncRNA-XIST knockdown reduced α-SMA, CoL1A1, GPX4 levels, and cell proliferation while increasing ferroptosis markers (indicative of enhanced ferroptosis) and miR-663a expression. Mechanistically, lncRNA-XIST was found to act as a competing endogenous RNA (ceRNA) to sponge miR-663a, thereby upregulating GPX4 and inhibiting ferroptosis. In vivo, lncRNA-XIST was shown to promote HF progression via the miR-663a/GPX4 axis.

LncRNA-XIST promotes HF by acting as a ceRNA for miR-663a, regulating GPX4, and suppressing ferroptosis to activate HSCs.

## Linked entities

- **Genes:** XIST (X inactive specific transcript) [NCBI Gene 7503], MIR663A (microRNA 663a) [NCBI Gene 724033], GPX4 (glutathione peroxidase 4) [NCBI Gene 2879], ACTA1 (actin alpha 1, skeletal muscle) [NCBI Gene 58], COL1A1 (collagen type I alpha 1 chain) [NCBI Gene 1277]
- **Chemicals:** ethanol (PubChem CID 702), Liproxstatin-1 (PubChem CID 135735917)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Gpt (glutamic pyruvic transaminase, soluble) [NCBI Gene 76282] {aka 1300007J06Rik, 2310022B03Rik, ALT, ALT1, Gpt-1, Gpt1}, Xist (inactive X specific transcripts) [NCBI Gene 213742] {aka A430022B11}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, Neat1 (nuclear paraspeckle assembly transcript 1 (non-protein coding)) [NCBI Gene 66961] {aka 2310043N10Rik, VINC}, Phex (phosphate regulating endopeptidase homolog, X-linked) [NCBI Gene 18675] {aka Gy, HPDR, HPDR1, Hyp, PEX}, DES (desmin) [NCBI Gene 1674] {aka CDCD3, CSM1, CSM2, LGMD1D, LGMD1E, LGMD2R}, GPX4 (glutathione peroxidase 4) [NCBI Gene 2879] {aka GPx-4, GSHPx-4, MCSP, PHGPx, SMDS, snGPx}, Socs2 (suppressor of cytokine signaling 2) [NCBI Gene 216233] {aka 8030460M17, CIS2, Cish2, D130043N08Rik, JAB, SOCS-2}, ADAMTS5 (ADAM metallopeptidase with thrombospondin type 1 motif 5) [NCBI Gene 11096] {aka ADAM-TS 11, ADAM-TS 5, ADAM-TS5, ADAMTS-11, ADAMTS-5, ADAMTS11}, Col1a1 (collagen, type I, alpha 1) [NCBI Gene 12842] {aka Col1a-1, Cola-1, Cola1, Mov-13, Mov13}, NORAD (non-coding RNA activated by DNA damage) [NCBI Gene 647979] {aka LINC00657}, Slc17a5 (solute carrier family 17 (anion/sugar transporter), member 5) [NCBI Gene 235504] {aka 4631416G20Rik, 4732491M05, AST, ISSD, NSD, SD}, CST12P (cystatin 12, pseudogene) [NCBI Gene 106478911] {aka Cst, Ctes4, E2}, PRDM1 (PR/SET domain 1) [NCBI Gene 639] {aka BLIMP-1, BLIMP1, PRDI-BF1}, XIST (X inactive specific transcript) [NCBI Gene 7503] {aka DXS1089, DXS399E, LINC00001, NCRNA00001, SXI1, swd66}, FOXN3 (forkhead box N3) [NCBI Gene 1112] {aka C14orf116, CHES1, PRO1635}, HIF1A (hypoxia inducible factor 1 subunit alpha) [NCBI Gene 3091] {aka HIF-1-alpha, HIF-1A, HIF-1alpha, HIF1, HIF1-ALPHA, MOP1}, MIR146A (microRNA 146a) [NCBI Gene 406938] {aka MIRN146, MIRN146A, miR-146a, miRNA146A}, MIR200A (microRNA 200a) [NCBI Gene 406983] {aka MIRN200A, mir-200a}, FN1 (fibronectin 1) [NCBI Gene 2335] {aka CIG, ED-B, FINC, FN, FNZ, GFND}, MIR663A (microRNA 663a) [NCBI Gene 724033] {aka MIR663, MIRN663, hsa-mir-663, hsa-mir-663a, mir-663a}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, ALB (albumin) [NCBI Gene 213] {aka FDAHT, HSA, PRO0883, PRO0903, PRO1341}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, FUT1 (fucosyltransferase 1 (H blood group)) [NCBI Gene 2523] {aka H, HH, HSC}, CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}, ACSL4 (acyl-CoA synthetase long chain family member 4) [NCBI Gene 2182] {aka ACS4, FACL4, LACS4, MRX63, MRX68, XLID63}, Gpx4 (glutathione peroxidase 4) [NCBI Gene 625249] {aka GPx-4, GSHPx-4, PHGPx, mtPHGPx, snGPx}, COL1A1 (collagen type I alpha 1 chain) [NCBI Gene 1277] {aka CAFYD, EDSARTH1, EDSC, OI1, OI2, OI3}, ACTA1 (actin alpha 1, skeletal muscle) [NCBI Gene 58] {aka ACTA, ASMA, CFTD, CFTD1, CFTDM, CMYO2A}, NEK6 (NIMA related kinase 6) [NCBI Gene 10783] {aka SID6-1512}, POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, GPT (glutamic--pyruvic transaminase) [NCBI Gene 2875] {aka AAT1, ALT, ALT1, GPT1, SGPT}, DNMT3B (DNA methyltransferase 3 beta) [NCBI Gene 1789] {aka FSHD4, ICF, ICF1, M.HsaIIIB}, PTEN (phosphatase and tensin homolog) [NCBI Gene 5728] {aka 10q23del, BZS, CWS1, DEC, GLM2, MHAM}, Nr1h4 (nuclear receptor subfamily 1, group H, member 4) [NCBI Gene 20186] {aka Fxr, HRR1, RIP14, Rxrip14}, COL1A2 (collagen type I alpha 2 chain) [NCBI Gene 1278] {aka EDSARTH2, EDSCV, OI4}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, Pparg (peroxisome proliferator activated receptor gamma) [NCBI Gene 19016] {aka Nr1c3, PPAR-gamma, PPAR-gamma2, PPARgamma, PPARgamma2}, MIR29B1 (microRNA 29b-1) [NCBI Gene 407024] {aka MIRN29B1, miR-29b, miRNA29B1, mir-29b-1}, Airn (antisense Igf2r RNA) [NCBI Gene 104103] {aka 2810051F02Rik, 2810434M15Rik, Air, B930018I07Rik, D17Ertd663e, IGF2RAS}, PKM (pyruvate kinase M1/2) [NCBI Gene 5315] {aka CTHBP, HEL-S-30, OIP3, PK3, PKM2, TCB}, Acta2 (actin alpha 2, smooth muscle, aorta) [NCBI Gene 11475] {aka 0610041G09Rik, Actvs, SMAalpha, SMalphaA, a-SMA, alphaSMA}
- **Diseases:** liver injury (MESH:D017093), pulmonary fibrosis (MESH:D011658), hepatocellular carcinoma (MESH:D006528), LPO (MESH:D011017), viral (MESH:D014777), Cytotoxicity (MESH:D064420), LDH (MESH:C538133), lung adenocarcinoma (MESH:D000077192), alcoholic steatohepatitis (MESH:D005235), oral cancer (MESH:D009062), chronic liver diseases (MESH:D008107), inflammatory (MESH:D007249), degenerative diseases (MESH:D019636), fibrotic diseases (MESH:D004194), cardiac fibrosis (MESH:D005355), mitochondrial dysfunction (MESH:D028361), Alzheimer's disease (MESH:D000544), pulmonary (MESH:D008171), HF (MESH:D008103)
- **Chemicals:** bicinchoninic acid (MESH:C047117), GSH (MESH:D005978), CO2 (MESH:D002245), Lipid (MESH:D008055), SYBR Green II (MESH:C098798), polyvinylidene fluoride (MESH:C024865), formalin (MESH:D005557), Xanthohumol (MESH:C104536), ROS (MESH:D017382), Olive oil (MESH:D000069463), CCK-8 (-), H&amp;E (MESH:D006371), crystal violet (MESH:D005840), polyunsaturated fatty acids (MESH:D005231), hydroxyproline (MESH:D006909), hematoxylin (MESH:D006416), penicillin (MESH:D010406), Lipofectamine 2000 (MESH:C086724), MDA (MESH:D008315), water (MESH:D014867), Fe (MESH:D007501), TRIzol (MESH:C411644), BODIPY (MESH:C095489), Li (MESH:C000595890), sodium dodecyl sulfate (MESH:D012967), Ethanol (MESH:D000431), paraffin (MESH:D010232), saline (MESH:D012965), methanol (MESH:D000432), MDA (MESH:D015104), CCl4 (MESH:D002251), polyacrylamide (MESH:C016679), pentobarbital sodium (MESH:D010424), PEG300 (MESH:C000595211), Ginsenoside Rg3 (MESH:C097367), streptomycin (MESH:D013307)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** LX-2 — Homo sapiens (Human), Transformed cell line (CVCL_5792), KL-ZL-1015-01 — Homo sapiens (Human), Transformed cell line (CVCL_K762), Con — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_RL17), Huh7 — Homo sapiens (Human), Adult hepatocellular carcinoma, Cancer cell line (CVCL_0336), PLC/PRF/5 — Homo sapiens (Human), Adult hepatocellular carcinoma, Cancer cell line (CVCL_0485), HepG2 — Homo sapiens (Human), Hepatoblastoma, Cancer cell line (CVCL_0027), CCK-8 — Homo sapiens (Human), T-cell prolymphocytic leukemia, Cancer cell line (CVCL_5443)

## Full text

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## Figures

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## References

59 references — full list in the complete paper: https://tomesphere.com/paper/PMC12932219/full.md

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Source: https://tomesphere.com/paper/PMC12932219