# CRISPR/Cas Genome Editing and Its Applications in Cereal Crop Improvement

**Authors:** Sirisha Kaniganti, Himanshu Saini, A. K. Chaitanya, Niranjan Hegde, Priya Shah, Nakul D. Magar, Ramesh Rijal, Jeevan Jyoti Kaushik, Deepak Nanda, Sharad Sachan, Anand Kumar, Roopali Bhoite, Harsha Rayudu Jamedar

PMC · DOI: 10.1002/pei3.70133 · Plant-Environment Interactions · 2026-02-24

## TL;DR

CRISPR/Cas genome editing is transforming cereal crops by enabling precise genetic changes to improve yield, resilience, and nutrition.

## Contribution

The paper reviews recent CRISPR advancements and their applications in modifying complex traits in major cereal crops.

## Key findings

- CRISPR technologies like Cas9 and base editing are used to modify genes affecting yield and stress tolerance in cereals.
- Genome editing reprograms biological pathways rather than relying on single-gene effects for trait improvement.
- Challenges include trait complexity and regulatory issues in translating lab results to field applications.

## Abstract

CRISPR/Cas‐based genome editing has emerged as a transformative tool for precise genetic improvement of cereal crops. Recent advances in CRISPR technologies, including Cas9, Cas12, Cas13, base editing, and prime editing, have enabled targeted modification of genes and regulatory elements controlling yield, stress tolerance, and grain nutritional quality in major cereals such as rice, wheat, maize, and barley. This review summarizes current progress in CRISPR‐mediated genome editing systems, delivery strategies, and representative applications in cereal crop improvement. Emphasis is placed on how genome editing reprograms enzymatic activities and biological pathways underlying complex agronomic traits rather than acting through single‐gene effects. The review also discusses challenges related to trait complexity, regulatory considerations, and prospects for translating genome‐edited cereal crops from laboratory research to field‐level application. Collectively, this review highlights the potential of CRISPR/Cas genome editing as a powerful approach for developing high‐yielding, resilient, and nutritionally improved cereal crops.

## Linked entities

- **Proteins:** cas9 (type II CRISPR RNA-guided endonuclease Cas9)

## Full-text entities

- **Genes:** STM (KNOX/ELK homeobox transcription factor) [NCBI Gene 842534] {aka BUM, BUM1, BUMBERSHOOT, BUMBERSHOOT 1, F24O1.38, F24O1_38}, MP (Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein) [NCBI Gene 838573] {aka ARF5, AUXIN RESPONSE FACTOR 5, F6F9.10, F6F9_10, IAA24, MONOPTEROS}, PDS3 (phytoene desaturase 3) [NCBI Gene 827061] {aka DL3145C, FCAALL.28, PDE226, PDS, PHYTOENE DESATURASE, PIGMENT DEFECTIVE 226}, BBM (Integrase-type DNA-binding superfamily protein) [NCBI Gene 831609] {aka BABY BOOM, T10B6.90, T10B6_90}
- **Diseases:** RTD (MESH:D007922), Toxicity (MESH:D064420), infection (MESH:D007239), Drought (MESH:C536747), fungal (MESH:D009181), bacterial (MESH:D001424)
- **Chemicals:** amylopectin (MESH:D000687), Carbon (MESH:D002244), glucan (MESH:D005936), vitamin E (MESH:D014810), Nitrogen (MESH:D009584), PEG (MESH:D011092), nitrate (MESH:D009566), sugar (MESH:D000073893), amylose (MESH:D000688), ABA (MESH:D000040), asparagine (MESH:D001216), acrylamide (MESH:D020106), adenine (MESH:D000225), gibberellin (MESH:D005875), water (MESH:D014867), cytosine (MESH:D003596), carbohydrate (MESH:D002241), starch (MESH:D013213), amino acid (MESH:D000596), Cas12a (-), reactive oxygen species (MESH:D017382), GA (MESH:D005708), lipids (MESH:D008055), resistant starch (MESH:D000084922), sucrose (MESH:D013395), Cytokinin (MESH:D003583), CO2 (MESH:D002245)
- **Species:** Tobacco rattle virus (no rank) [taxon 12295], watermelon [taxon 260674], Glycine max (soybean, species) [taxon 3847], Streptococcus pyogenes (species) [taxon 1314], Thanatephorus sp. RV (species) [taxon 359004], Homo sapiens (human, species) [taxon 9606], Staphylococcus aureus (species) [taxon 1280], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Solanum lycopersicum (tomato, species) [taxon 4081], Agrobacterium tumefaciens (species) [taxon 358], Rice tungro spherical virus (no rank) [taxon 35287], Streptococcus thermophilus (species) [taxon 1308], Oryza sativa (Asian cultivated rice, species) [taxon 4530], Nicotiana benthamiana (species) [taxon 4100], Sorghum bicolor (broomcorn, species) [taxon 4558], Solanum tuberosum (potatoes, species) [taxon 4113], Striga hermonthica (purple witchweed, species) [taxon 68872], Xanthomonas oryzae (species) [taxon 347]
- **Cell lines:** Cas13 — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_A4EM)

## Full text

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## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12932124/full.md

## References

114 references — full list in the complete paper: https://tomesphere.com/paper/PMC12932124/full.md

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Source: https://tomesphere.com/paper/PMC12932124