# Reduced immunogenicity of MYC amplified, metastatic prostate cancer

**Authors:** Sunny Kahlon, Vayda R. Barker, Mallika Varkhedi, Alex Y. Wang, Taha I. Huda, George Blanck

PMC · DOI: 10.18632/oncoscience.644 · Oncoscience · 2026-02-07

## TL;DR

This study finds that MYC amplification in metastatic prostate cancer is linked to worse survival and reduced immune response.

## Contribution

The study links MYC amplification in prostate cancer to reduced immunogenicity using genomics data.

## Key findings

- Increased MYC amplification is found in metastatic prostate cancer.
- MYC amplification correlates with worse progression-free survival and reduced immunogenicity.

## Abstract

Objectives: Through a genomics-based approach analyzing gene expression levels and adaptive immune receptor recombinations, we sought to determine whether MYC amplification was associated with a worse outcome and reduced immunogenicity.

Methods: MYC copy numbers and the presence of adaptive immune receptor (IR) recombination sequencing reads were quantified in genomics files representing prostate cancer samples.

Results: Our results showed that increased MYC amplification was found in metastatic stages of prostate cancer. Furthermore, increased MYC amplification was not only associated with worse progression-free survival but also with reduced immunogenicity in metastatic tumors, as determined by the recovery of a reduced numbers of adaptive IR recombination sequencing reads from tumor RNAseq and tumor whole genome sequence files.

Conclusions: MYC amplification is associated with reduced tumor immunogenicity as assessed by the recovery of IR recombination reads from prostate cancer genomics files.

## Linked entities

- **Genes:** MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609]
- **Diseases:** prostate cancer (MONDO:0005159)

## Full-text entities

- **Genes:** CD79A (CD79a molecule) [NCBI Gene 973] {aka IGA, IGAlpha, MB-1, MB1}, SPHK1 (sphingosine kinase 1) [NCBI Gene 8877] {aka SPHK}, MYCN (MYCN proto-oncogene, bHLH transcription factor) [NCBI Gene 4613] {aka FGLDS1, MODED, MPAPA, MYCNsORF, MYCNsPEP, N-myc}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, TRBV20OR9-2 (T cell receptor beta variable 20/OR9-2 (non-functional)) [NCBI Gene 6962] {aka CDR3, TCRBV20S2, TCRBV2O, TCRBV2S2O}, ERG (ETS transcription factor ERG) [NCBI Gene 2078] {aka LMPHM14, erg-3, p55}, CIITA (class II major histocompatibility complex transactivator) [NCBI Gene 4261] {aka C2TA, CIITAIV, MHC2D1, MHC2TA, NLRA}, IGK (immunoglobulin kappa locus) [NCBI Gene 50802] {aka IGK@}, INSR (insulin receptor) [NCBI Gene 3643] {aka CD220, HHF5}, TRG (T cell receptor gamma locus) [NCBI Gene 6965] {aka TCRG, TRG@}, CD68 (CD68 molecule) [NCBI Gene 968] {aka GP110, LAMP4, SCARD1}, TRB (T cell receptor beta locus) [NCBI Gene 6957] {aka TCRB, TRB@}, CTSC (cathepsin C) [NCBI Gene 1075] {aka CPPI, DPP-I, DPP1, DPPI, HMS, JP}, TRD (T cell receptor delta locus) [NCBI Gene 6964] {aka TCRD, TCRDV1, TRD@}, CD79B (CD79b molecule) [NCBI Gene 974] {aka AGM6, B29, IGB, Igbeta}, TRA (T cell receptor alpha locus) [NCBI Gene 6955] {aka IMD7, TCRA, TRA@}, IGL (immunoglobulin lambda locus) [NCBI Gene 3535] {aka IGL@}, CD33 (CD33 molecule) [NCBI Gene 945] {aka CD33rSiglec, SIGLEC-3, SIGLEC3, p67}, ITGAX (integrin subunit alpha X) [NCBI Gene 3687] {aka CD11C, SLEB6}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, CD22 (CD22 molecule) [NCBI Gene 933] {aka SIGLEC-2, SIGLEC2}, SLTM (SAFB like transcription modulator) [NCBI Gene 79811] {aka Met}, CD19 (CD19 molecule) [NCBI Gene 930] {aka B4, CVID3}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, MS4A1 (membrane spanning 4-domains A1) [NCBI Gene 931] {aka B1, Bp35, CD20, CVID5, FMC7, LEU-16}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}
- **Diseases:** IDs (MESH:C535742), metastatic (MESH:D000092182), cancer (MESH:D009369), prostate adenocarcinoma (MESH:D000230), GBM (MESH:D005910), Prostate cancer (MESH:D011471), neuroblastoma (MESH:D009447), castration resistant (MESH:D064129), prostate tumor (MESH:D011472), glioblastoma (MESH:D005909), BAM (MESH:C535477)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12931888/full.md

## References

26 references — full list in the complete paper: https://tomesphere.com/paper/PMC12931888/full.md

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Source: https://tomesphere.com/paper/PMC12931888