# Design, synthesis and antiproliferative activity of oxadiazole derivatives as potent glycogen synthase kinase-3/histone deacetylase 6 dual inhibitors

**Authors:** Changchun Ye, Zilu Chen, Jiantao Jiang, Jianzhong Li, Ranran Kong, Shiyuan Liu, Xin Chen, Zhengshui Xu

PMC · DOI: 10.1080/14756366.2026.2627711 · Journal of Enzyme Inhibition and Medicinal Chemistry · 2026-02-23

## TL;DR

Scientists designed a compound that inhibits two enzymes linked to cancer, showing strong activity in tests.

## Contribution

A new oxadiazole compound (15i) was developed as a dual inhibitor of GSK3 and HDAC6 with high potency.

## Key findings

- Compound 15i has IC50 values of 5.50 nM for HDAC6 and 69 nM and 88 nM for GSK3α and GSK3β, respectively.
- 15i showed potent cytotoxicity against AGS cancer cells with submicromolar IC50 values.
- Molecular docking simulations confirmed that 15i fits well into the active sites of HDAC6 and GSK3β.

## Abstract

A series of oxadiazole-based dual inhibitors targeting GSK3 and HDAC6 were rationally designed by integrating key pharmacophores into a single molecule. Among these derivatives, 4-(((5-(benzo[d][1, 3]dioxol-5-yl)-1,3,4-oxadiazol-2-yl)thio)methyl)-N-hydroxybenzamide (15i) was identified as the most potent compound with IC50 of 5.50, 69 nM and 88 nM against HDAC6, GSK3α and GSK3β, respectively. 15i also exhibited potent cytotoxicity against the AGS cancer cell line, with IC50 values in the submicromolar range. Molecular docking simulation confirmed that 15i fitted well into the active sites of both HDAC6 and GSK3β. These findings establish compound 15i as a promising candidate for further evaluation.

## Linked entities

- **Genes:** gsk-3 (Glycogen synthase kinase-3) [NCBI Gene 173149], HDAC6 (histone deacetylase 6) [NCBI Gene 10013], GSK3A (glycogen synthase kinase 3 alpha) [NCBI Gene 2931], GSK3B (glycogen synthase kinase 3 beta) [NCBI Gene 2932]
- **Chemicals:** 15i (PubChem CID 70789255)
- **Diseases:** cancer (MONDO:0004992)

## Full-text entities

- **Genes:** JAG1 (jagged canonical Notch ligand 1) [NCBI Gene 182] {aka AGS, AGS1, AHD, AWS, CD339, CMT2HH}, CASP3 (caspase 3) [NCBI Gene 836] {aka CPP32, CPP32B, SCA-1}, CASP9 (caspase 9) [NCBI Gene 842] {aka APAF-3, APAF3, ICE-LAP6, MCH6, PPP1R56}, COL11A2 (collagen type XI alpha 2 chain) [NCBI Gene 1302] {aka DFNA13, DFNB53, FBCG2, HKE5, OSMEDA, OSMEDB}, HDAC8 (histone deacetylase 8) [NCBI Gene 55869] {aka CDA07, CDLS5, HD8, HDACL1, KDAC8, MRXS6}, CDK6 (cyclin dependent kinase 6) [NCBI Gene 1021] {aka MCPH12, PLSTIRE}, Gsk3b (glycogen synthase kinase 3 beta) [NCBI Gene 56637] {aka 7330414F15Rik, 8430431H08Rik, GSK-3, GSK-3beta, GSK3}, HDAC1 (histone deacetylase 1) [NCBI Gene 3065] {aka GON-10, HD1, KDAC1, RPD3, RPD3L1}, PTEN (phosphatase and tensin homolog) [NCBI Gene 5728] {aka 10q23del, BZS, CWS1, DEC, GLM2, MHAM}, HDAC6 (histone deacetylase 6) [NCBI Gene 10013] {aka CPBHM, HD6, JM21, KDAC6, PPP1R90}, FLT3 (fms related receptor tyrosine kinase 3) [NCBI Gene 2322] {aka CD135, FLK-2, FLK2, STK1}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, CTTN (cortactin) [NCBI Gene 2017] {aka EMS1}, HDAC11 (histone deacetylase 11) [NCBI Gene 79885] {aka HD11}, GSK3A (glycogen synthase kinase 3 alpha) [NCBI Gene 2931], PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, GSK3B (glycogen synthase kinase 3 beta) [NCBI Gene 2932], GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, CCND1 (cyclin D1) [NCBI Gene 595] {aka BCL1, D11S287E, PRAD1, U21B31}, CDK4 (cyclin dependent kinase 4) [NCBI Gene 1019] {aka CMM3, MCPH31, PSK-J3}, HDAC3 (histone deacetylase 3) [NCBI Gene 8841] {aka HD3, KDAC3, RPD3, RPD3-2}, TUBA1B (tubulin alpha 1b) [NCBI Gene 10376] {aka K-ALPHA-1}, HDAC2 (histone deacetylase 2) [NCBI Gene 3066] {aka HD2, KDAC2, RPD3, YAF1}, ABL1 (ABL proto-oncogene 1, non-receptor tyrosine kinase) [NCBI Gene 25] {aka ABL, BCR-ABL, CHDSKM, JTK7, bcr/abl, c-ABL}, CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}, HDAC9 (histone deacetylase 9) [NCBI Gene 9734] {aka HD7, HD7b, HD9, HDAC, HDAC7B, HDAC9B}
- **Diseases:** tumorigenesis (MESH:D063646), gastric cancer (MESH:D013274), pancreatic cancer (MESH:D010190), Tumour (MESH:D009369), ovarian cancer (MESH:D010051), colorectal, breast, prostate, pancreatic, and haematologic malignancies (MESH:D011472), metastasis (MESH:D009362), cytotoxicity (MESH:D064420)
- **Chemicals:** trichostatin A (MESH:C012589), panobinostat (MESH:D000077767), H2O (MESH:D014867), HATU (MESH:C472082), NaOH (MESH:D012972), 13C (MESH:C000615229), EtOH (MESH:D000431), brine (MESH:C017082), adenine (MESH:D000225), acetic acid (MESH:D019342), CS2 (MESH:D002246), SDS (MESH:D012967), belinostat (MESH:C487081), oxygen (MESH:D010100), Zinc (MESH:D015032), 3H (MESH:D014316), methanol (MESH:D000432), adenosine (MESH:D000241), silica gel (MESH:D058428), streptomycin (MESH:D013307), hydrazine hydrate (MESH:C029424), ester (MESH:D004952), Hydroxamic acid (MESH:D006877), LY2090314 (MESH:C584053), carboxylic acids (MESH:D002264), nitrogen (MESH:D009584), EDTA (MESH:D004492), Tideglusib (MESH:C520571), DIPEA (MESH:C027070), CO2 (MESH:D002245), Alamar blue (MESH:C005843), ACY-1215 (MESH:C572255), ACY-241 (MESH:C000717707), Tubastatin A (MESH:C553587), DMSO (MESH:D004121), H (MESH:D006859), hydrazides (MESH:D006834), PVDF (MESH:C024865), PBS (MESH:D007854), oxadiazole (MESH:D010069), Na (MESH:D012964), penicillin (MESH:D010406), SAHA (MESH:D000077337), 1,3,4-oxadiazole (MESH:C583463), 14i (-), 2H (MESH:D003903), Hoechst 33342 (MESH:C017807)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** MCF-7 — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_0031), HepG-2 — Homo sapiens (Human), Hepatoblastoma, Cancer cell line (CVCL_0027), RPMI-8226 — Homo sapiens (Human), Plasma cell myeloma, Cancer cell line (CVCL_0014), Hela — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030), HT29 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0320), OCI-AML3 — Homo sapiens (Human), Adult acute myelomonocytic leukemia, Cancer cell line (CVCL_1844)

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12931315/full.md

## References

57 references — full list in the complete paper: https://tomesphere.com/paper/PMC12931315/full.md

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Source: https://tomesphere.com/paper/PMC12931315