# Chromatin remodelling subunit SMARCB1 is implicated in dendrite development and complex brain functions

**Authors:** Kristina I. Lemke, Alina Filatova, Joanna Chiang, Hannah North, Myrthe R. M. Kamphof, Michaela Becker-Röck, Bodo Laube, Gijs W. E. Santen, Hanna Swaab, Ulrike A. Nuber

PMC · DOI: 10.1186/s40478-026-02258-2 · Acta Neuropathologica Communications · 2026-02-19

## TL;DR

This study shows how a chromatin remodeling protein, SMARCB1, is important for brain development and function, and its dysfunction may lead to neurodevelopmental disorders like Coffin-Siris syndrome.

## Contribution

The study links SMARCB1 to dendrite development and brain function using a mouse model and human data, revealing potential mechanisms for associated cognitive and behavioral impairments.

## Key findings

- Smarcb1 mutant mice showed impaired motor coordination, spatial memory, and anxiety-like behaviors.
- Human individuals with SMARCB1 mutations exhibited similar cognitive and behavioral deviations.
- Reduced dendritic complexity and altered Wasl transcripts suggest disrupted actin polymerization in brain dysfunction.

## Abstract

SMARCB1 encodes a core component of the BAF chromatin remodelling complex and pathogenic variants in this gene are associated with neurodevelopmental disorders such as Coffin-Siris syndrome and intellectual disability with choroid plexus hyperplasia. The relationship between reduced or dysfunctional SMARCB1 protein products and severe functional brain changes associated with Coffin-Siris syndrome, including intellectual disability and severely delayed language and motor development, remains largely unknown. We performed cellular, molecular, and behavioural analyses of a Coffin-Siris syndrome mouse model with a heterozygous nervous system-specific Smarcb1 mutation. In addition, we evaluated general cognitive abilities, as well as cognitive and behavioural functioning, in individuals with SMARCB1-related Coffin-Siris syndrome. Smarcb1 mutant mice exhibited deficits in fine motor coordination and balance, as well as impaired spatial learning and memory. Furthermore, these mice showed anxiety-like behaviours and agitation when exposed to novel environments. The detected behavioural abnormalities could indicate impaired decision-making, which results in impaired risk assessment. Comparable cognitive and behavioural deviations were identified in individuals with Coffin-Siris syndrome and SMARCB1 pathogenic variants. Histological analyses revealed structural alterations in the brain of the Smarcb1 mouse model, including decreased dendritic length and complexity of dendritic trees. These alterations may explain the observed functional impairments. Notably, our finding of reduced Wasl transcripts in mutant Purkinje cell nuclei suggests that dysregulation of actin polymerization may be involved in the discovered dendritic defects. Taken together, we demonstrate a link between the chromatin remodelling complex component SMARCB1, complex brain functions, neuronal structure, and a key regulator of actin branching.

The online version contains supplementary material available at 10.1186/s40478-026-02258-2.

## Linked entities

- **Genes:** SMARCB1 (SWI/SNF related BAF chromatin remodeling complex subunit B1) [NCBI Gene 6598], WASL (WASP like actin nucleation promoting factor) [NCBI Gene 8976]
- **Proteins:** SMARCB1 (SWI/SNF related BAF chromatin remodeling complex subunit B1)
- **Diseases:** Coffin-Siris syndrome (MONDO:0007617), intellectual disability (MONDO:0001071)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Smarca2 (SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2) [NCBI Gene 67155] {aka 2610209L14Rik, SAMRCA2, SNF2alpha, Snf2l2, brahma, brm}, Kirrel2 (kirre like nephrin family adhesion molecule 2) [NCBI Gene 243911] {aka C330019F22Rik, NEPH3, NLG1}, Arid1b (AT-rich interaction domain 1B) [NCBI Gene 239985] {aka 8030481M12, 9330189K18Rik, Ardi1b, B230217J03Rik, BAF250B, mKIAA1235}, Smarca5 (SNF2 related chromatin remodeling ATPase 5) [NCBI Gene 93762] {aka 4933427E24Rik, D030040M08Rik, D330027N15Rik, MommeD4, Snf2h}, SMARCA4 (SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4) [NCBI Gene 6597] {aka BAF190, BAF190A, BRG1, CSS4, MRD16, OTSC12}, Ino80 (INO80 complex subunit) [NCBI Gene 68142] {aka 2310079N15Rik, 4632409L19Rik, Inoc1}, BANF1 (barrier to autointegration nuclear assembly factor 1) [NCBI Gene 8815] {aka BAF, BCRP1, D14S1460, NGPS}, Was (Wiskott-Aldrich syndrome) [NCBI Gene 22376] {aka Wasp}, Chd8 (chromodomain helicase DNA binding protein 8) [NCBI Gene 67772] {aka 5830451P18Rik, Chd-8, Duplin, HELSNF1, mKIAA1564}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, Nrgn (neurogranin) [NCBI Gene 64011] {aka 0710001B06Rik, NG, NG/RC3, Pss1, RC3}, Nes (nestin) [NCBI Gene 18008] {aka ESTM46, Ifaprc2, Marc2, RC2}, Gap43 (growth associated protein 43) [NCBI Gene 14432] {aka B-50, Basp2, GAP-43}, Chdh (choline dehydrogenase) [NCBI Gene 218865] {aka D630034H06Rik}, Actr2 (actin related protein 2) [NCBI Gene 66713] {aka 4921510D23Rik, Arp2, D6Ertd746e}, Smarca4 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4) [NCBI Gene 20586] {aka BAF190A, Brg1, HP1-BP72, SNF2beta, SW1/SNF, b2b508.1Clo}, Wasl (WASP like actin nucleation promoting factor) [NCBI Gene 73178] {aka 2900021I12Rik, 3110031I02Rik, N-WASP}, Smarcb1 (SWI/SNF related BAF chromatin remodeling complex subunit B1) [NCBI Gene 20587] {aka Baf47, Ini1, SNF5/INI1, Snf5}, Actl6a (actin-like 6A) [NCBI Gene 56456] {aka 2810432C06Rik, ARP4, Actl6, Baf53a}, Dnah8 (dynein, axonemal, heavy chain 8) [NCBI Gene 13417] {aka ATPase, Dnahc8, Hst6.7b, P1-Loop}, Chd4 (chromodomain helicase DNA binding protein 4) [NCBI Gene 107932] {aka 9530019N15Rik, D6Ertd380e, Mi-2beta, mKIAA4075}, Adnp (activity-dependent neuroprotective protein) [NCBI Gene 11538] {aka mKIAA0784}, Arp (Arp lymphoid/erythroid hyperplasia) [NCBI Gene 110301], baf (b-associated fitness) [NCBI Gene 12016], SMARCB1 (SWI/SNF related BAF chromatin remodeling complex subunit B1) [NCBI Gene 6598] {aka BAF47, CSS3, INI-1, INI1, MRD15, PPP1R144}, Tbp (TATA box binding protein) [NCBI Gene 21374] {aka GTF2D1, Gtf2d, SCA17, TFIID}, Actr3 (ARP3 actin-related protein 3) [NCBI Gene 74117] {aka 1200003A09Rik, Arp3}, Actl6b (actin-like 6B) [NCBI Gene 83766] {aka Actl6, ArpNa, Baf53b}, Calb1 (calbindin 1) [NCBI Gene 12307] {aka Brain-2, CB, Calb, Calb-1}, Chd5 (chromodomain helicase DNA binding protein 5) [NCBI Gene 269610] {aka 4930532L22Rik, B230399N07Rik, CHD-5}, Bcl7a (B cell CLL/lymphoma 7A) [NCBI Gene 77045] {aka 4432415N06Rik}, Ss18l1 (SS18, nBAF chromatin remodeling complex subunit like 1) [NCBI Gene 269397] {aka A230053O16Rik, CREST}
- **Diseases:** microcephaly (MESH:D008831), intellectual impairment (MESH:C565406), Functional disabilities (MESH:D003291), Cerebellar hypoplasia (MESH:C562568), gait alterations (MESH:D020234), hyperactive/impulsivity (MESH:D007174), speech impairment (MESH:D013064), vermis hypoplasia (MESH:C536293), motor impairments (MESH:D000068079), Impaired spatial learning and memory (MESH:D008569), disorders (MESH:D009358), behavioural, cognitive, and motor abnormalities (MESH:D003072), absence of walking ability (MESH:D013009), Developmental delay (MESH:D002658), hyperactivity (MESH:D006948), Dendritic defects (MESH:D007635), panic (MESH:D016584), Nicolaides-Baraitser syndrome (MESH:C536116), cerebellar abnormalities (MESH:D002526), foot slips (MESH:D004839), motor deficits (MESH:D009461), conduct problems (MESH:D019973), tremor (MESH:D014202), impaired depth perception or visual acuity (MESH:D014786), premature death (MESH:D003643), ataxia (MESH:D001259), Rett syndrome (MESH:D015518), ID (MESH:D008607), autism spectrum disorder (MESH:D000067877), brain alterations (MESH:D001927), abnormalities (MESH:D000014), Coffin-Siris syndrome (MESH:C536436), -making (MESH:C537705), inattention (MESH:D001308), hypotonia (MESH:D009123), ID-CPH (MESH:D020288), Anxiety (MESH:D001007), speech and motor delay (MESH:D007805), impaired central nervous system function (MESH:D002493), Head dips (MESH:D006258), brain midline abnormalities (MESH:C000719407), ADHD (MESH:D001289), muscle weakness (MESH:D018908), fear (MESH:C000719212), anxious behaviour (MESH:D001523), Alzheimer s disease (MESH:D000544), impairment in (MESH:D060825), agitation (MESH:D011595)
- **Chemicals:** ATP (MESH:D000255), calcium (MESH:D002118), DAPI (MESH:C007293), eosin (MESH:D004801), hematoxylin (MESH:D006416), H&amp;E (MESH:D006371), NesCre (-)
- **Species:** Drosophila melanogaster (fruit fly, species) [taxon 7227], Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090], Rattus norvegicus (brown rat, species) [taxon 10116]
- **Mutations:** c.568 C > T, A 158A, p.Arg190Trp

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## References

16 references — full list in the complete paper: https://tomesphere.com/paper/PMC12930746/full.md

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Source: https://tomesphere.com/paper/PMC12930746