# Engineering Basal Cognition: Minimal Genetic Circuits for Habituation, Sensitization, and Massed–Spaced Learning

**Authors:** Jordi Pla-Mauri, Ricard Solé

PMC · DOI: 10.1021/acssynbio.5c00766 · ACS Synthetic Biology · 2026-02-10

## TL;DR

This paper explores how simple genetic circuits in single cells can mimic basic learning behaviors like habituation and sensitization, using synthetic biology.

## Contribution

The study introduces minimal synthetic genetic circuits that replicate nonassociative learning behaviors in unicellular organisms.

## Key findings

- Synthetic circuits were designed to reproduce habituation and sensitization in unicellular systems.
- The circuits also replicate the massed–spaced learning effect using regulatory elements and quorum-sensing molecules.
- The work highlights differences in temporal dynamics between gene-based and neural learning systems.

## Abstract

Cognition is often
associated with complex brains, yet
many forms
of learningsuch as habituation, sensitization, and even spacing
effectshave been observed in single cells and aneural organisms.
These simple cognitive abilities, despite their cost, offer evolutionary
advantages by allowing organisms to reduce environmental uncertainty
and improve survival. Recent studies have confirmed early claims of
learning-like behavior in protists and slime molds, pointing to the
presence of basal cognitive functions long before the emergence of
nervous systems. In this work, we adopt a synthetic biology approach
to explore how minimal genetic circuits can implement nonassociative
learning in unicellular systems. Building on theoretical models and
using well-characterized regulatory elements, we design and simulate
synthetic circuits capable of reproducing habituation, sensitization,
and the massed–spaced learning effect. Our designs incorporate
activators, repressors, fluorescent reporters, and quorum-sensing
molecules, offering a platform for experimental validation. By examining
the structural and dynamical constraints of these circuits, we highlight
the distinct temporal dynamics of gene-based learning systems compared
to neural counterparts and provide insights into the evolutionary
and engineering challenges of building synthetic cognitive behavior
at the cellular level.

## Full-text entities

- **Genes:** TFPI (tissue factor pathway inhibitor) [NCBI Gene 7035] {aka EPI, LACI, TFI, TFPI1}, LIPE (lipase E, hormone sensitive type) [NCBI Gene 3991] {aka AOMS4, FPLD6, HSL, LHS, REH}
- **Diseases:** fatigue (MESH:D005221), MSL (MESH:C536030)
- **Chemicals:** C6 (MESH:C117224), I (MESH:D007455), A (MESH:D001151), X (-)
- **Species:** Badhamia polycephala (species) [taxon 5791], Escherichia coli (E. coli, species) [taxon 562], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Aplysia californica (California sea hare, species) [taxon 6500], Homo sapiens (human, species) [taxon 9606], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395]

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12930500/full.md

## References

66 references — full list in the complete paper: https://tomesphere.com/paper/PMC12930500/full.md

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Source: https://tomesphere.com/paper/PMC12930500