# A mammalian, glutaminase-free asparaginase enhances venetoclax activity in preclinical AML models with chromosome 7 deletion

**Authors:** Dhabya Majid, Zhe Wang, Amanda M. Schalk, Bin Yuan, Qi Zhang Tatarata, Jessica L. Root, Araceli Isabella Garza, Mhd Yousuf Yassouf, Basant T. Gamal, Sammy Feri-Borgogno, Annie Hoai Nguyen, Marina Konopleva, Evelien Peeters, Ying Su, Patrick K Reville, Farhad Ravandi-Kashani, Arnon Lavie, Hussein A. Abbas

PMC · DOI: 10.3389/fonc.2025.1606239 · Frontiers in Oncology · 2026-02-10

## TL;DR

A new mammalian asparaginase improves the effectiveness of Venetoclax in treating AML, especially in cases with chromosome 7 deletions.

## Contribution

A novel glutaminase-free mammalian asparaginase is shown to enhance Venetoclax activity in AML models with chromosome 7 deletion.

## Key findings

- EBD-300 monotherapy showed significant activity in AML cell lines with chromosome 7/7q deletions.
- Combining EBD-300 with Venetoclax reduced the IC50 of resistant AML cell lines and improved survival in some mouse models.
- EBD-300 may offer a safer alternative to bacterial asparaginases by avoiding glutaminase-related side effects.

## Abstract

Acute myeloid leukemia (AML) remains a malignancy with poor prognosis andfrequent resistance to standard therapies, underscoring the urgent need for novel treatmentstrategies. In this preclinical study, we evaluated the anti-leukemic efficacy of EBD-300, a novelmammalian-derived asparaginase lacking glutaminase activity, in combination with Venetoclax(VEN).

EBD-300 monotherapy exhibited significant activity in AML cell lines harboringchromosome 7/7q deletions, which are likely dependent on extracellular asparagine due to thepresence of only a single copy of the asparagine synthetase (ASNS) gene - the enzymeresponsible for endogenous asparagine synthesis. The combination of EBD-300 with VENdecreased the IC50 values of some VEN-resistant AML cell lines and reduced the colony-formingcapacity of primary AML patient samples. In patient-derived xenograft (PDX) mouse models,EBD-300, alone or in combination with VEN, significantly reduced leukemic burden in theperipheral blood, bone marrow, and spleen, and improved overall survival in one model.

Although survival benefits were observed in some, but not all, models, suggestingpotential model-specific effects, these findings collectively support a potential therapeutic roleEBD-300 in combination with VEN in AML. While weight loss was observed, EBD-300 mayrepresent a potentially safer alternative to conventional bacterial asparaginases by mitigatingthe adverse effects typically associated with the glutaminase coactivity of the bacterialasparaginases, an observation that requires further investigation.

## Linked entities

- **Genes:** ASNS (asparagine synthetase (glutamine-hydrolyzing)) [NCBI Gene 440]
- **Chemicals:** Venetoclax (PubChem CID 49846579)
- **Diseases:** Acute myeloid leukemia (MONDO:0015667), AML (MONDO:0018874)

## Full-text entities

- **Genes:** BAX (BCL2 associated X, apoptosis regulator) [NCBI Gene 581] {aka BCL2L4}, Gls (glutaminase) [NCBI Gene 14660] {aka 6330442B14, B230365M23Rik}, GATA2 (GATA binding protein 2) [NCBI Gene 2624] {aka DCML, IMD21, MONOMAC, NFE1B}, TES (testin LIM domain protein) [NCBI Gene 26136] {aka TESS, TESS-2}, BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596] {aka Bcl-2, PPP1R50}, ASPG (asparaginase) [NCBI Gene 374569] {aka C14orf76, GPA/WT, LYSOLP, hASNase1}, PTPRC (protein tyrosine phosphatase receptor type C) [NCBI Gene 5788] {aka B220, CD45, CD45R, GP180, IMD105, L-CA}, Aspg (asparaginase) [NCBI Gene 104816] {aka A530050D06Rik, Gm690}, BAK1 (BCL2 antagonist/killer 1) [NCBI Gene 578] {aka BAK, BAK-LIKE, BCL2L7, CDN1}, ERAL1 (Era like 12S mitochondrial rRNA chaperone 1) [NCBI Gene 26284] {aka CEGA, ERA, ERA-W, ERAL1A, ERAL1B, H-ERA}, RELN (reelin) [NCBI Gene 5649] {aka ETL7, LIS2, PRO1598, RL}, Trp53 (transformation related protein 53) [NCBI Gene 22059] {aka Tp53, bbl, bfy, bhy, p44, p53}, KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845] {aka 'C-K-RAS, C-K-RAS, CFC2, K-RAS2A, K-RAS2B, K-RAS4A}, U2AF1 (U2 small nuclear RNA auxiliary factor 1) [NCBI Gene 7307] {aka FP793, RN, RNU2AF1, U2AF35, U2AFBP}, CSF2 (colony stimulating factor 2) [NCBI Gene 1437] {aka CSF, GMCSF}, ASNS (asparagine synthetase (glutamine-hydrolyzing)) [NCBI Gene 440] {aka ASNSD, TS11}, SLC2A5 (solute carrier family 2 member 5) [NCBI Gene 6518] {aka GLUT-5, GLUT5}, NRAS (NRAS proto-oncogene, GTPase) [NCBI Gene 4893] {aka ALPS4, CMNS, N-ras, NCMS, NRAS1, NS6}, ANXA5 (annexin A5) [NCBI Gene 308] {aka ANX5, CPB-I, ENX2, HEL-S-7, PP4, RPRGL3}, GYPA (glycophorin A (MNS blood group)) [NCBI Gene 2993] {aka CD235a, GPA, GPErik, GPSAT, HGpMiV, HGpMiXI}, POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, Gdf15 (growth differentiation factor 15) [NCBI Gene 23886] {aka MIC-1, NAG-1, SBF}, JAK2 (Janus kinase 2) [NCBI Gene 3717] {aka JTK10}, CD33 (CD33 molecule) [NCBI Gene 945] {aka CD33rSiglec, SIGLEC-3, SIGLEC3, p67}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, GLS (glutaminase) [NCBI Gene 2744] {aka AAD20, CASGID, DEE71, EIEE71, GAC, GAM}, Idh1 (isocitrate dehydrogenase 1 (NADP+), soluble) [NCBI Gene 15926] {aka E030024J03Rik, Id-1, Idh-1, Idpc}, PTPN11 (protein tyrosine phosphatase non-receptor type 11) [NCBI Gene 5781] {aka BPTP3, CFC, JMML, METCDS, NS1, PTP-1D}, RUNX1 (RUNX family transcription factor 1) [NCBI Gene 861] {aka AML1, AML1-EVI-1, AMLCR1, CBF2alpha, CBFA2, EVI-1}, CD34 (CD34 molecule) [NCBI Gene 947]
- **Diseases:** thrombosis (MESH:D013927), leukemia (MESH:D007938), mycoplasma (MESH:D009175), neurotoxicity (MESH:D020258), abnormal breathing (MESH:D004417), Cancer (MESH:D009369), ALL (MESH:D054198), lethargy (MESH:D053609), weight loss (MESH:D015431), Toxicity (MESH:D064420), dehydration (MESH:D003681), pancreatitis (MESH:D010195), DM (MESH:D009223), PDX (MESH:C536408), NOD (MESH:D020191), bleeding (MESH:D006470), liver toxicity (MESH:D056486), hypersensitivity (MESH:D004342), liver injury (MESH:D017093), diarrhea (MESH:D003967), dislocation (MESH:D004204), AML (MESH:D015470), hematologic malignancy (MESH:D019337), MDS (MESH:D009190), SCID (MESH:D053632), solid (MESH:D018250)
- **Chemicals:** EcA (-), trypan blue (MESH:D014343), PI (MESH:D010716), ammonia (MESH:D000641), oxygen (MESH:D010100), glycerol (MESH:D005990), Penicillin (MESH:D010406), aspartic acid (MESH:D001224), nitrogen (MESH:D009584), bromophenol blue (MESH:D001978), amino acid (MESH:D000596), MgSO4 (MESH:D008278), EDTA (MESH:D004492), VEN (MESH:C579720), polyacrylamide (MESH:C016679), Streptomycin (MESH:D013307), ATP (MESH:D000255), fructose (MESH:D005632), glutamine (MESH:D005973), CO2 (MESH:D002245), Methylcellulose (MESH:D008747), deoxyribonucleosides (MESH:D003853), ribonucleosides (MESH:D012263), Tween 20 (MESH:D011136), AlphaMEM (MESH:C420642), PBS (MESH:D007854), pegaspargase (MESH:C042705), PEG400 (MESH:C000595213), heparin (MESH:D006493), HCl (MESH:D006851), SDS (MESH:D012967), ASN (MESH:D001216), DMSO (MESH:D004121), AZA (MESH:D001374), glucose (MESH:D005947), ice (MESH:D007053)
- **Species:** Hepatovirus A (no rank) [taxon 12092], Escherichia coli (E. coli, species) [taxon 562], Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606], Cavia porcellus (domestic guinea pig, species) [taxon 10141], Dickeya chrysanthemi (species) [taxon 556], Actinopterygii (fishes, superclass) [taxon 7898]
- **Mutations:** aspartic acid to asparagine
- **Cell lines:** CD-1 — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_5731), CTG-2456 — Homo sapiens (Human), Klippel-Feil syndrome, Finite cell line (CVCL_9K09), THP-1 — Homo sapiens (Human), Childhood acute monocytic leukemia, Cancer cell line (CVCL_0006), OCI — Homo sapiens (Human), Acute erythroid leukemia, Cancer cell line (CVCL_2149), PDX-1 — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_UD76), MOLM-13 — Homo sapiens (Human), Adult acute monocytic leukemia, Cancer cell line (CVCL_2119), OCI-AML6 — Homo sapiens (Human), Adult acute myeloid leukemia, Cancer cell line (CVCL_5226), -3 — Mus musculus (Mouse), Hybridoma (CVCL_C6V6), UCSD — Homo sapiens (Human), Hypertrophic cardiomyopathy, Induced pluripotent stem cell (CVCL_EM44)

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12930363/full.md

## References

22 references — full list in the complete paper: https://tomesphere.com/paper/PMC12930363/full.md

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Source: https://tomesphere.com/paper/PMC12930363