# CEBPB Expression in Tumor Cells Drives Immune Evasion in Colorectal Cancer via CTLA4 Up-regulation in T Cells

**Authors:** Hye Jeong Yun, Chan Ho Park, Dahye Yun, Hye-Ri Shin, Jeong Dong Lee, Changhee Park, Kiyeon Kim, Heejun Shim, Hyejin Sim, Se Min Kim, Min Jung Kim, Ji Won Park, Seung-Bum Ryoo, Yoojoo Lim, Seung-Yong Jeong, Kyu Joo Park, Tae-You Kim, Junil Kim, Jae-Kyung Won, Sae-Won Han

PMC · DOI: 10.34133/cancomm.0013 · Cancer Communications · 2026-02-24

## TL;DR

This study shows that CEBPB in colorectal cancer cells increases CTLA4 in T cells, helping tumors evade the immune system and worsening patient outcomes.

## Contribution

The study identifies CEBPB as a novel driver of immune evasion in CRC through its regulation of CTLA4 in T cells.

## Key findings

- CEBPB expression is elevated in TP53-mutated colorectal cancers and correlates with poor survival.
- Tumor cell CEBPB overexpression increases CTLA4 in T cells, promoting tumor growth in mice.
- Wild-type TP53 negatively regulates CEBPB expression in CRC cell lines.

## Abstract

Background: Immune checkpoint inhibitors are ineffective in the majority of colorectal cancers (CRCs) that are microsatellite stable. However, the underlying reasons for their unresponsiveness and mechanisms of immune evasion are poorly understood. In the present study, we aimed to elucidate the mechanisms underlying the immune evasion driven by CRC cells. Methods: We performed single-cell RNA sequencing of tumor tissues from 30 CRC patients and syngeneic mice implanted with transformation-related protein 53 (Trp53) knockout CT26 cells. Gene expression and correlations of individual tumor microenvironment (TME) components were analyzed, and their functional significance was investigated using syngeneic mouse models and cell line co-culture experiments. Results: CCAAT enhancer-binding protein beta (CEBPB) expression was increased in tumor protein 53 (TP53)-mutated CRCs. We confirmed that wild-type TP53 negatively regulated CEBPB expression in CRC cell lines. CEBPB expression was associated with decreased intratumoral T cell infiltration and negatively impacted survival in CRC patients. In the intercellular correlation analysis of gene expression, tumor epithelial cell CEBPB expression was significantly correlated with cytotoxic T-lymphocyte associated protein 4 (CTLA4) expression in T cells, especially in regulatory and exhausted T cells. Cebpb overexpression promoted tumor growth in the immunocompetent syngeneic mouse models, which was accompanied by increased CTLA-4 expression in tumor-infiltrating CD4+ T cells. In vitro co-culture experiments also showed that tumor cell CEBPB overexpression increased CTLA4 in T cells. Conclusions: Tumor cell CEBPB expression, up-regulated by TP53 mutation, can increase CTLA4 expression in T cells and negatively affect patient outcomes. These findings suggested a central role of tumor cell CEBPB in shaping an immunosuppressive TME.

## Linked entities

- **Genes:** CEBPB (CCAAT enhancer binding protein beta) [NCBI Gene 1051], TP53 (tumor protein p53) [NCBI Gene 7157], TP53 (tumor protein p53) [NCBI Gene 7157], CTLA4 (cytotoxic T-lymphocyte associated protein 4) [NCBI Gene 1493]
- **Diseases:** colorectal cancer (MONDO:0005575)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Usp1 (ubiquitin specific peptidase 1) [NCBI Gene 230484], Il2 (interleukin 2) [NCBI Gene 16183] {aka Il-2}, Cda (cytidine deaminase) [NCBI Gene 72269] {aka 2210401N16Rik}, Havcr2 (hepatitis A virus cellular receptor 2) [NCBI Gene 171285] {aka TIM-3, Tim3, Timd3}, Cd28 (CD28 antigen) [NCBI Gene 12487], Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, S100a8 (S100 calcium binding protein A8 (calgranulin A)) [NCBI Gene 20201] {aka 60B8Ag, B8Ag, CFAg, CP-10, Caga, MRP8}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, Vsir (V-set immunoregulatory receptor) [NCBI Gene 74048] {aka 4632428N05Rik, Dies1, PD-1H, VISTA}, Foxp3 (forkhead box P3) [NCBI Gene 20371] {aka JM2, scurfin, sf}, Ptprc (protein tyrosine phosphatase receptor type C) [NCBI Gene 19264] {aka B220, CD45R, Cd45, L-CA, Ly-5, Lyt-4}, Il1rl1 (interleukin 1 receptor-like 1) [NCBI Gene 17082] {aka DER4, Fit-1, Ly84, ST2L, St2, St2-rs1}, Lcn2 (lipocalin 2) [NCBI Gene 16819] {aka 24p3, NRL, Sip24}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, Serpinb2 (serine (or cysteine) peptidase inhibitor, clade B, member 2) [NCBI Gene 18788] {aka PAI-2, Planh2, ovalbumin}, S100a9 (S100 calcium binding protein A9 (calgranulin B)) [NCBI Gene 20202] {aka 60B8Ag, BEE22, Cagb, GAGB, L1Ag, MRP14}, Cxcl12 (C-X-C motif chemokine ligand 12) [NCBI Gene 20315] {aka Pbsf, Scyb12, Sdf1, Tlsf, Tpar1}, Gzmb (granzyme B) [NCBI Gene 14939] {aka CCP-1/C11, CCP1, Ctla-1, Ctla1, GZB}, LAG3 (lymphocyte activating 3) [NCBI Gene 3902] {aka CD223}, Cxcl1 (C-X-C motif chemokine ligand 1) [NCBI Gene 14825] {aka Fsp, Gro1, KC, Mgsa, N51, Scyb1}, Kras (Kras proto-oncogene, GTPase) [NCBI Gene 16653] {aka K-Ras, K-Ras 2, K-ras, Ki-ras, Kras-2, Kras2}, KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845] {aka 'C-K-RAS, C-K-RAS, CFC2, K-RAS2A, K-RAS2B, K-RAS4A}, Trp53 (transformation related protein 53) [NCBI Gene 22059] {aka Tp53, bbl, bfy, bhy, p44, p53}, Ctla4 (cytotoxic T-lymphocyte-associated protein 4) [NCBI Gene 12477] {aka Cd152, Ctla-4, Ly-56}, Irf7 (interferon regulatory factor 7) [NCBI Gene 54123], Sbsn (suprabasin) [NCBI Gene 282619] {aka 1110005D19Rik}, Cebpb (CCAAT/enhancer binding protein beta) [NCBI Gene 12608] {aka C/EBPbeta, CRP2, IL-6DBP, LAP, LIP, NF-IL6}, Cd274 (CD274 antigen) [NCBI Gene 60533] {aka A530045L16Rik, B7h1, Pdcd1l1, Pdcd1lg1, Pdl1}, Cd3e (CD3 antigen, epsilon polypeptide) [NCBI Gene 12501] {aka CD3, CD3epsilon, T3e}, CTLA4 (cytotoxic T-lymphocyte associated protein 4) [NCBI Gene 1493] {aka ALPS5, CD, CD152, CELIAC3, CTLA-4, GRD4}, BTLA (B and T lymphocyte associated) [NCBI Gene 151888] {aka BTLA1, CD272}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, Pdcd1 (programmed cell death 1) [NCBI Gene 18566] {aka Ly101, PD-1, Pdc1}, Mmut (methylmalonyl-Coenzyme A mutase) [NCBI Gene 17850] {aka D230010K02Rik, Mcm, Mut}, CEBPB (CCAAT enhancer binding protein beta) [NCBI Gene 1051] {aka C/EBP-beta, IL6DBP, NF-IL6, TCF5}, Cd4 (CD4 antigen) [NCBI Gene 12504] {aka L3T4, Ly-4}, TRBV20OR9-2 (T cell receptor beta variable 20/OR9-2 (non-functional)) [NCBI Gene 6962] {aka CDR3, TCRBV20S2, TCRBV2O, TCRBV2S2O}, Actb (actin, beta) [NCBI Gene 11461] {aka Actx, E430023M04Rik, beta-actin}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, NRAS (NRAS proto-oncogene, GTPase) [NCBI Gene 4893] {aka ALPS4, CMNS, N-ras, NCMS, NRAS1, NS6}, Ifng (interferon gamma) [NCBI Gene 15978] {aka IFN-g, If2f, Ifg}, Akr1c6 (aldo-keto reductase family 1, member C6) [NCBI Gene 83702] {aka 3alpha-HSD, Akr1c1, Hsd17b5}, Il2ra (interleukin 2 receptor, alpha chain) [NCBI Gene 16184] {aka CD25, Il2r, Ly-43}, Cd14 (CD14 antigen) [NCBI Gene 12475], Lag3 (lymphocyte-activation gene 3) [NCBI Gene 16768] {aka CD223, LAG-3, Ly66}, Slpi (secretory leukocyte peptidase inhibitor) [NCBI Gene 20568] {aka ALP}, MAP2K7 (mitogen-activated protein kinase kinase 7) [NCBI Gene 5609] {aka JNKK2, MAPKK7, MEK, MEK 7, MKK7, PRKMK7}, C3 (complement component 3) [NCBI Gene 12266] {aka ASP, HSE-MSF, Plp}, APC (APC regulator of Wnt signaling pathway) [NCBI Gene 324] {aka BTPS2, DESMD, DP2, DP2.5, DP3, GS}, HAVCR2 (hepatitis A virus cellular receptor 2) [NCBI Gene 84868] {aka CD366, HAVcr-2, KIM-3, SPTCL, TIM3, TIMD-3}, Btla (B and T lymphocyte associated) [NCBI Gene 208154] {aka A630002H24}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}
- **Diseases:** hepatocellular carcinoma (MESH:D006528), BRCA (MESH:D001941), renal cell carcinoma (MESH:D002292), breast cancer (MESH:D001943), mucosal-associated (MESH:D052016), liver (MESH:D017093), low-grade glioma (MESH:D008228), T (MESH:D001260), MSI-L (MESH:D007926), adenomatosis polyposis coli (MESH:D011125), breast, endometrial, and pancreatic cancers (MESH:C537262), LN metastasis (MESH:D009362), uterine corpus endometrial carcinoma (MESH:D016889), immunodeficient (MESH:D007153), CRC (MESH:D015179), head and neck squamous cell carcinoma (MESH:D000077195), colon carcinoma (MESH:D003110), stomach adenocarcinoma (MESH:D013274), CMS (MESH:C535673), COAD (MESH:D029424), lung cancer (MESH:D008175), MC38 tumors (MESH:D009369), MSI-H (MESH:D053842), epithelial tumor (MESH:D002277), rectal cancer (MESH:D012004), inflammation (MESH:D007249), disease (MESH:D004194), melanoma (MESH:D008545), pancreatic adenocarcinoma (MESH:D010190)
- **Chemicals:** PBS (MESH:D007854), Tween-20 (MESH:D011136), nivolumab (MESH:D000077594), nutlin-3a (MESH:C482205), cycloheximide (MESH:D003513), dimethyl sulfoxide (MESH:D004121), tremelimumab (MESH:C520704), Formalin (MESH:D005557), glutamine (MESH:D005973), SYBR green (MESH:C098022), borate (MESH:D001881), CO2 (MESH:D002245), paraformaldehyde (MESH:C003043), balstilimab (MESH:C000720935), lenvatinib (MESH:C531958), Lipofectamine (MESH:C086724), MTT (MESH:C070243), pembrolizumab (MESH:C582435), 2-mercaptoethanol (MESH:D008623), oil (MESH:D009821), B7880 (-), propidium iodide (MESH:D011419), H2O2 (MESH:D006861), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MESH:C022616), H&amp;E (MESH:D006371), regorafenib (MESH:C559147), 8-bromoadenosine 3',5'-cyclic monophosphate (MESH:D015124), hematoxylin (MESH:D006416), penicillin (MESH:D010406), puromycin (MESH:D011691), essential amino acids (MESH:D000601), ipilimumab (MESH:D000074324), oligonucleotide (MESH:D009841), cAMP (MESH:D000242), water (MESH:D014867), iron (MESH:D007501), MG132 (MESH:C072553), ethylenediaminetetraacetic acid (MESH:D004492), cobimetinib (MESH:C574276), agar (MESH:D000362), hygromycin (MESH:C026273), relatlimab (MESH:C000721227), polyacrylamide (MESH:C016679), streptomycin (MESH:D013307), Bis-Tris (MESH:C026272), doxy (MESH:D004318), paraffin (MESH:D010232), acridine orange (MESH:D000165), 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (MESH:C410687)
- **Species:** Methanoculleus sp. dm2 (species) [taxon 224721], Cytomegalovirus (genus) [taxon 10358], Rattus norvegicus (brown rat, species) [taxon 10116], Homo sapiens (human, species) [taxon 9606], Rat sarcoma virus (species) [taxon 11848], Mycoplasma (genus) [taxon 2093], Armenian hamster [taxon 10032], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** R273H, S258I, R213*, G242V, R248Q, P309S, R248W, R175H, K132T
- **Cell lines:** Bio X Cell — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_2768), MC38 — Mus musculus (Mouse), Mouse colon adenocarcinoma, Cancer cell line (CVCL_B288), LM011- — Homo sapiens (Human), Laryngeal squamous cell carcinoma, Cancer cell line (CVCL_5986), SNUC1 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_1708), S13A — Homo sapiens (Human), Conditionally immortalized cell line (CVCL_LF75), EL4 — Mus musculus (Mouse), Mouse precursor T cell lymphoblastic lymphoma/leukemia, Cancer cell line (CVCL_0255), BALB/c — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0184), SW480 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0546), Jurkat — Homo sapiens (Human), Childhood T acute lymphoblastic leukemia, Cancer cell line (CVCL_0065), Caco-2 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0025), Cebeb-oe — Homo sapiens (Human), Chronic myelogenous leukemia, BCR-ABL1 positive, Cancer cell line (CVCL_SI66), CT26.WT — Mus musculus (Mouse), Mouse colon adenocarcinoma, Cancer cell line (CVCL_7256), SW1463 — Homo sapiens (Human), Rectal adenocarcinoma, Cancer cell line (CVCL_1718), T — Homo sapiens (Human), Esophageal squamous cell carcinoma, Cancer cell line (CVCL_3174), SNU1544 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_5027), C57BL/6N — Mus musculus (Mouse), Embryonic stem cell (CVCL_2H81), CT26 — Mus musculus (Mouse), Mouse colon adenocarcinoma, Cancer cell line (CVCL_7254), SW837 — Homo sapiens (Human), Rectal adenocarcinoma, Cancer cell line (CVCL_1729), SNU81 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_5098), HCT116 — Homo sapiens (Human), Colon carcinoma, Cancer cell line (CVCL_0291), SNU1411 — Homo sapiens (Human), Rectal adenocarcinoma, Cancer cell line (CVCL_5025), HEK293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), CEBPB-oe — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_A9BA), UC10-4F10-11 — Nothocricetulus migratorius (Gray dwarf hamster), Hybridoma (CVCL_8977), RMP1-14 — Cricetulus griseus (Chinese hamster), Spontaneously immortalized cell line (CVCL_AZ69), /c — Mus musculus (Mouse), Hepatocellular carcinoma of the mouse, Cancer cell line (CVCL_9103)

## Full text

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## Figures

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## References

62 references — full list in the complete paper: https://tomesphere.com/paper/PMC12929812/full.md

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Source: https://tomesphere.com/paper/PMC12929812