# Human lung organoids model for assessing host response to Mycobacterium tuberculosis infection

**Authors:** Chaofan Li, Pengfei Zhong, Zhimin Yun, Leiming Fang, Meida Xiang, Qisheng Su, Jiru Wang, Hebing Chen, Zhi Chen, Liang Yue, Yingxia Tan

PMC · DOI: 10.3389/fcimb.2026.1725344 · Frontiers in Cellular and Infection Microbiology · 2026-02-10

## TL;DR

This study uses human lung organoids to model how the lungs respond to tuberculosis infection, offering a new way to study the disease and develop treatments.

## Contribution

The study introduces a novel human lung organoid model for investigating Mycobacterium tuberculosis infection and host responses.

## Key findings

- Mtb infection in lung organoids caused decreased viability and fibrotic responses.
- Mtb triggered a TLR4/NF-κB inflammatory response and increased antimicrobial peptides and pro-inflammatory cytokines.
- The model highlights the role of lung structural cells in tuberculosis pathogenesis.

## Abstract

Airway and alveolar epithelial cells serve as the primary defense in the lower respiratory tract, yet their exact role in Mycobacterium tuberculosis (Mtb) infection is incompletely understood. Given that Mtb is a human-restricted pathogen, a representative human model is required. Lung organoids (LOs), which are composed of various epithelial cells, mesenchymal cells, and extracellular matrix, facilitate the investigation of bacterial infections.

In this study, we established an Mtb infection model using human induced pluripotent stem cells (iPSCs)-derived LOs.

Prolonged infection led to the gradual invasion of Mtb from the periphery to the interior of the organoid, leading to decreased viability and the induction of fibrotic responses. Transcriptomic and protein analyses suggest that Mtb infection triggered a TLR4/NF-κB-associated inflammatory response. Additionally, the elevation of antimicrobial peptides and the release of diverse pro-inflammatory cytokines and chemokines were noted in the infected LOs.

These findings emphasize the potential role of LOs in host defense and demonstrate that the Mtb-infected lung organoid model provides a novel platform for elucidating the role of pulmonary structural cells in tuberculosis pathogenesis. Furthermore, this model opens new avenues for the development of molecular therapeutic strategies.

## Linked entities

- **Proteins:** TLR4 (toll like receptor 4), NFKB1 (nuclear factor kappa B subunit 1)
- **Diseases:** tuberculosis (MONDO:0018076)
- **Species:** Mycobacterium tuberculosis (taxon 1773)

## Full-text entities

- **Genes:** NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, PRICKLE4 (prickle planar cell polarity protein 4) [NCBI Gene 29964] {aka C6orf49, OBTP, OEBT}, CXCL8 (C-X-C motif chemokine ligand 8) [NCBI Gene 3576] {aka GCP-1, GCP1, IL8, LECT, LUCT, LYNAP}, ACTA1 (actin alpha 1, skeletal muscle) [NCBI Gene 58] {aka ACTA, ASMA, CFTD, CFTD1, CFTDM, CMYO2A}, POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, SFTPB (surfactant protein B) [NCBI Gene 6439] {aka PSP-B, SFTB3, SFTP3, SMDP1, SP-B}, OR2AG1 (olfactory receptor family 2 subfamily AG member 1) [NCBI Gene 144125] {aka OR11-79, OR2AG3}, COX4I2 (cytochrome c oxidase subunit 4I2) [NCBI Gene 84701] {aka COX4, COX4-2, COX4B, COX4L2, COXIV-2, dJ857M17.2}, DEFB4A (defensin beta 4A) [NCBI Gene 1673] {aka BD-2, DEFB-2, DEFB102, DEFB2, DEFB4, HBD-2}, FGF7 (fibroblast growth factor 7) [NCBI Gene 2252] {aka HBGF-7, KGF}, CCL3 (C-C motif chemokine ligand 3) [NCBI Gene 6348] {aka G0S19-1, LD78, LD78ALPHA, MIP-1-alpha, MIP1A, SCI}, TRPC5OS (TRPC5 opposite strand) [NCBI Gene 100329135] {aka TRPC5-AS1}, BMP4 (bone morphogenetic protein 4) [NCBI Gene 652] {aka BMP2B, BMP2B1, MCOPS6, OFC11, ZYME}, FOXJ1 (forkhead box J1) [NCBI Gene 2302] {aka CILD43, FKHL13, HFH-4, HFH4}, LTB (lymphotoxin beta) [NCBI Gene 4050] {aka TNFC, TNFSF3, TNLG1C, p33}, VEGFA (vascular endothelial growth factor A) [NCBI Gene 7422] {aka L-VEGF, MVCD1, VEGF, VPF}, EGF (epidermal growth factor) [NCBI Gene 1950] {aka HOMG4, URG}, mucin [NCBI Gene 100508689], ATAD3C (ATPase family AAA domain containing 3C) [NCBI Gene 219293], TLX3 (T cell leukemia homeobox 3) [NCBI Gene 30012] {aka HOX11L2, RNX}, TLR2 (toll like receptor 2) [NCBI Gene 7097] {aka CD282, TIL4}, TNFRSF13C (TNF receptor superfamily member 13C) [NCBI Gene 115650] {aka BAFF-R, BAFFR, BROMIX, CD268, CVID4, prolixin}, TLR4 (toll like receptor 4) [NCBI Gene 7099] {aka ARMD10, CD284, TLR-4, TOLL}, FGF10 (fibroblast growth factor 10) [NCBI Gene 2255] {aka LADD3}, CYP4F3 (cytochrome P450 family 4 subfamily F member 3) [NCBI Gene 4051] {aka CPF3, CYP4F, CYPIVF3, LTB4H}, TNNT2 (troponin T2, cardiac type) [NCBI Gene 7139] {aka CMD1D, CMH2, CMPD2, LVNC6, RCM3, TnTC}, PODN (podocan) [NCBI Gene 127435] {aka PCAN, SLRR5A}, CCL2 (C-C motif chemokine ligand 2) [NCBI Gene 6347] {aka GDCF-2, HC11, HSMCR30, MCAF, MCP-1, MCP1}, GRM4 (glutamate metabotropic receptor 4) [NCBI Gene 2914] {aka GPRC1D, MGLUR4, mGlu4}, VIM (vimentin) [NCBI Gene 7431], LCNL1 (lipocalin like 1) [NCBI Gene 401562], IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, RELA (RELA proto-oncogene, NF-kB subunit) [NCBI Gene 5970] {aka AIF3BL3, CMCU, NFKB3, p65}, MT1E (metallothionein 1E) [NCBI Gene 4493] {aka MT-1E, MT-IE, MT1, MTD}, MUC5AC (mucin 5AC, oligomeric mucus/gel-forming) [NCBI Gene 4586] {aka MUC5, TBM, leB, mucin}, SPIB (Spi-B transcription factor) [NCBI Gene 6689] {aka SPI-B}, SPTA1 (spectrin alpha, erythrocytic 1) [NCBI Gene 6708] {aka EL2, HPP, HS3, SPH3, SPTA}, DUXB (double homeobox B) [NCBI Gene 100033411], ITLN2 (intelectin 2) [NCBI Gene 142683] {aka HL-2, HL2}, CCL4L2 (C-C motif chemokine ligand 4 like 2) [NCBI Gene 9560] {aka AT744.2, CCL4L, SCYA4L, SCYQ4L2}, NFKBIA (NFKB inhibitor alpha) [NCBI Gene 4792] {aka EDAID2, IKBA, MAD-3, NFKBI}, PAGE2B (PAGE family member 2B) [NCBI Gene 389860] {aka CT16.5, GAGEE3, PAGE-2B}, IL17A (interleukin 17A) [NCBI Gene 3605] {aka CTLA-8, CTLA8, IL-17, IL-17A, IL17, ILA17}, CD40 (CD40 molecule) [NCBI Gene 958] {aka Bp50, CDW40, TNFRSF5, p50}, SCGB3A2 (secretoglobin family 3A member 2) [NCBI Gene 117156] {aka LU103, PNSP1, UGRP1, pnSP-1}
- **Diseases:** cavitary lesions (MESH:C566924), inflammation (MESH:D007249), fibrosis (MESH:D005355), mycobacterial infection (MESH:D009165), LOs (MESH:D008171), bacterial infections (MESH:D001424), granuloma (MESH:D006099), Mtb infection (MESH:D014376), pulmonary fibrosis (MESH:D011658), impaired lung function (MESH:D003072), infectious disease (MESH:D003141), deaths (MESH:D003643), CL (MESH:D002971), infected (MESH:D007239), pulmonary TB (MESH:D014397)
- **Chemicals:** Tyrosine (MESH:D014443), water (MESH:D014867), CHIR99021 (MESH:C473711), Retinol (MESH:D014801), Trizol (MESH:C411644), hydrochloric acid (MESH:D006851), L-ascorbic acid (MESH:D001205), potassium dichromate (MESH:D011192), SDS (MESH:D012967), acetic acid (MESH:D019342), ethanol (MESH:D000431), cAMP (MESH:D000242), Pentose (MESH:D010429), paraffin (MESH:D010232), Pyruvate (MESH:D019289), acid (MESH:D000143), Dorsomorphin (MESH:C516138), DPBS (MESH:C012939), xylene (MESH:D014992), ATP (MESH:D000255), SB431542 (MESH:C459179), aniline blue (MESH:C017006), citrate (MESH:D019343), paraformaldehyde (MESH:C003043), Tween 20 (MESH:D011136), PBS (MESH:D007854), PVDF (MESH:C024865), alcohol (MESH:D000438), DAPI (MESH:C007293), poly (A) (MESH:D011061), phosphomolybdic acid (MESH:C003125), monothioglycerol (MESH:C009465), CF (MESH:D002142), Masson's (-), Y27632 (MESH:C108830), RA (MESH:D014212), hematoxylin (MESH:D006416), glucuronate (MESH:D020723), glycerol (MESH:D005990), DEX (MESH:D003907), 3-isobutyl-1-methylxanthine (MESH:D015056), Phenylalanine (MESH:D010649), Fatty acid (MESH:D005227)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Oryctolagus cuniculus (domestic rabbit, species) [taxon 9986], Cavia porcellus (domestic guinea pig, species) [taxon 10141], Mycobacterium tuberculosis (species) [taxon 1773], Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12929407/full.md

## References

42 references — full list in the complete paper: https://tomesphere.com/paper/PMC12929407/full.md

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Source: https://tomesphere.com/paper/PMC12929407