# Infants exposed to maternal type 1 diabetes: intrauterine epigenetic modifications and neurological development

**Authors:** Nieves Luisa González-González, Enrique González-Dávila, José Ramón Castro-Conde, Candelaria González-Campos, Olivia Orribo-Morales, Carlos Flores, José Miguel Lorenzo-Salazar, Rafaela González-Montelongo, Adrián Muñoz-Barrera, Erika Padrón-Pérez, Nazaret Villalba-Martín, Abraham Acevedo-Arozena, Laura Tascón-Padrón, Marina Armas-González

PMC · DOI: 10.3389/fendo.2026.1759949 · Frontiers in Endocrinology · 2026-02-10

## TL;DR

Infants born to mothers with Type-1 diabetes show altered DNA methylation in genes linked to brain development, which may affect their cognitive and motor skills.

## Contribution

This is the first study to link intrauterine DNA methylation changes to neurodevelopmental outcomes in infants exposed to maternal Type-1 diabetes.

## Key findings

- Infants exposed to maternal Type-1 diabetes had 108 differentially methylated genes linked to neurodevelopmental pathways.
- Genes like NRXN1 and SHANK3 showed significant methylation changes and were enriched in key neurological pathways.
- At age two, these infants scored lower on cognitive, language, and motor assessments compared to controls.

## Abstract

The relationship between the neurodevelopment in infants exposed to maternal Type-1 diabetes and changes in fetal DNA methylation has not yet been investigated.

This hypothesis-generating study, we aimed to determine whether neurodevelopmental outcomes in offspring from mothers with Type-1 diabetes are associated with intrauterine epigenetic changes in fetal DNA.

We conducted a prospective, pilot case-control study, comparing infants exposed to maternal Type-1-diabetes with control infants. Cord blood DNA samples were analyzed using the TruSeq-Methyl-Capture-EPIC-Kit, covering over 3.3 million CpGs. The Bayley-III Scales were used to assess infant neurodevelopment, and the scores were correlated with the newborn DNA methylation data.

In infants exposed to maternal diabetes, we identified 108 differentially methylated genes enriched in pathways crucial for neurodevelopment: Vocal, Imitative and Observational Learning, Synapse Organization, and Neurogenesis. The greatest methylation differences were observed in differentially methylated regions (DMRs) annotated to key neurological genes: MYT1L (21.61%, q=1.97E-07), NRXN1 (12.30%, q=5.04E-75), SHANK3 (11.62%, q=9.81E-06) and KIRREL3 (7.35%, q= 1.53E-23). Both, NRXN1 and SHANK3, were enriched across all identified neurodevelopmental pathways. At two years of age, the infants exposed to maternal Type-1 diabetes scored significantly lower on the Bayley-III Scales across the cognitive, language, and motor domains. Methylation values across loci annotated to ten neurodevelopment-associated genes were linked to Bayley-III cognitive, language, and/or motor domain scores—with MYT1L and NRXN1 showing significant correlation with the Bayley-III language domain score.

While further confirmation is needed, we provide the first results supporting the hypothesis that neurodevelopmental alterations observed in offspring of mothers with Type-1 diabetes are potentially associated with DNA methylation changes during intrauterine life which can be identified at birth.

## Linked entities

- **Genes:** MYT1L (myelin transcription factor 1 like) [NCBI Gene 23040], NRXN1 (neurexin 1) [NCBI Gene 9378], SHANK3 (SH3 and multiple ankyrin repeat domains 3) [NCBI Gene 85358], KIRREL3 (kirre like nephrin family adhesion molecule 3) [NCBI Gene 84623]
- **Diseases:** Type-1 diabetes (MONDO:0005147)

## Full-text entities

- **Genes:** RIMS1 (regulating synaptic membrane exocytosis 1) [NCBI Gene 22999] {aka CORD7, RAB3IP2, RIM, RIM1}, MYT1L (myelin transcription factor 1 like) [NCBI Gene 23040] {aka MRD39, NZF1, ZC2H2C2, ZC2HC4B, myT1-L}, EBF3 (EBF transcription factor 3) [NCBI Gene 253738] {aka COE3, EBF-3, HADDS, O/E-2, OE-2}, OR2L13 (olfactory receptor family 2 subfamily L member 13) [NCBI Gene 284521] {aka OR2L14}, ANKRD11 (ankyrin repeat domain 11) [NCBI Gene 29123] {aka ANCO-1, ANCO1, LZ16, T13}, ACTL9 (actin like 9) [NCBI Gene 284382] {aka HSD21, SPGF53}, NRXN2 (neurexin 2) [NCBI Gene 9379], SHANK3 (SH3 and multiple ankyrin repeat domains 3) [NCBI Gene 85358] {aka DEL22q13.3, PROSAP2, PSAP2, SCZD15, SPANK-2}, MECP2 (methyl-CpG binding protein 2) [NCBI Gene 4204] {aka AUTSX3, MRX16, MRX79, MRXS13, MRXSL, PPMX}, ABLIM1 (actin binding LIM protein 1) [NCBI Gene 3983] {aka ABLIM, LIMAB1, LIMATIN, abLIM-1}, NRXN1 (neurexin 1) [NCBI Gene 9378] {aka Hs.22998, PTHSL2, SCZD17}, CHD7 (chromodomain helicase DNA binding protein 7) [NCBI Gene 55636] {aka CRG, HH5, IS3, KAL5}, SLC4A10 (solute carrier family 4 member 10) [NCBI Gene 57282] {aka NBCn2, NCBE}, CNTNAP2 (contactin associated protein 2) [NCBI Gene 26047] {aka AUTS15, CASPR2, CDFE, NRXN4, PTHSL1}, PRDM16 (PR/SET domain 16) [NCBI Gene 63976] {aka CMD1LL, KMT8F, LVNC8, MEL1, PFM13}, CNTNAP1 (contactin associated protein 1) [NCBI Gene 8506] {aka CASPR, CHN3, CNTNAP, NRXN4, P190}, KDM6B (lysine demethylase 6B) [NCBI Gene 23135] {aka JMJD3, NEDCFSA, NEDSST}, ARHGAP39 (Rho GTPase activating protein 39) [NCBI Gene 80728] {aka CrGAP, Vilse}, CACNA1C (calcium voltage-gated channel subunit alpha1 C) [NCBI Gene 775] {aka CACH2, CACN2, CACNA1C-IT2, CACNL1A1, CCHL1A1, CaV1.2}, SASH1 (SAM and SH3 domain containing 1) [NCBI Gene 23328] {aka CAPOK, DUH, DUH1, SH3D6A, dJ323M4.1}, KCNQ3 (potassium voltage-gated channel subfamily Q member 3) [NCBI Gene 3786] {aka BFNC2, EBN2, KV7.3}, KCNQ2 (potassium voltage-gated channel subfamily Q member 2) [NCBI Gene 3785] {aka BFNC, DEE7, EBN, EBN1, ENB1, HNSPC}, KIRREL3 (kirre like nephrin family adhesion molecule 3) [NCBI Gene 84623] {aka KIRRE, MRD4, NEPH2, PRO4502}, EHMT1 (euchromatic histone lysine methyltransferase 1) [NCBI Gene 79813] {aka EHMT1-IT1, EUHMTASE1, Eu-HMTase1, FP13812, GLP, GLP1}, GRIK4 (glutamate ionotropic receptor kainate type subunit 4) [NCBI Gene 2900] {aka EAA1, GRIK, GluK4, GluK4-2, KA1}, FOXP1 (forkhead box P1) [NCBI Gene 27086] {aka 12CC4, HSPC215, MFH, QRF1, hFKH1B}
- **Diseases:** hyperglycemia (MESH:D006943), congenital malformations (OMIM:163000), IHM (MESH:D000067329), ASD (MESH:D000067877), chromosomal abnormalities (MESH:D002869), Diabetes (MESH:D003920), drug abuse (MESH:D019966), neuroinflammation (MESH:D000090862), CF (MESH:D003550), obesity (MESH:D009765), gestational diabetes (MESH:D016640), Type-1diabetes (MESH:D006969), neurologic disorders (MESH:D009461), cardiovascular and metabolic diseases (MESH:D002318), neurodevelopmental alterations (MESH:C535809), T1D (MESH:D003922), DM (MESH:D012734), neurodevelopmental disorder (MESH:D002658), neurodevelopmental impairment (MESH:D009422), Cognitive and psychomotor impairments (MESH:D003072)
- **Chemicals:** EDTA (MESH:D004492), insulin (MESH:D007328), K3 (MESH:C058433), glucose (MESH:D005947)
- **Species:** Nicotiana tabacum (American tobacco, species) [taxon 4097], Homo sapiens (human, species) [taxon 9606], Rodentia (rodent, order) [taxon 9989]

## Full text

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## Figures

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## References

30 references — full list in the complete paper: https://tomesphere.com/paper/PMC12929157/full.md

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Source: https://tomesphere.com/paper/PMC12929157