# Loss of the PDLIM2 protein during chronic colitis promotes inflammation, impaired epithelium recovery, alterations to the microbiome and oxidative stress

**Authors:** Stephanie Ward, Orla T. Cox, Sara Roggiani, Tadgh Crowley, Silvia Turroni, Silvia Melgar, Rosemary O’Connor

PMC · DOI: 10.3389/fendo.2025.1720162 · Frontiers in Endocrinology · 2026-02-10

## TL;DR

Loss of the PDLIM2 protein worsens chronic colitis by causing inflammation, poor tissue repair, microbiome changes, and oxidative stress.

## Contribution

This study reveals a novel role for PDLIM2 in regulating intestinal health and inflammation during chronic colitis.

## Key findings

- PDLIM2 knockout mice showed worse epithelial damage and inflammation during colitis.
- PDLIM2 loss correlates with altered gut microbiome diversity and predicted functionality.
- PDLIM2 suppression in Caco-2 cells caused impaired cell adhesion and increased oxidative stress.

## Abstract

Ulcerative colitis (UC) involves impaired wound healing processes contributing to sustained immune and microbial interactions that aggravate intestinal injury and may progress to colitis-associated cancer (CAC). Here we investigated whether PDLIM2, a known regulator of both epithelial and immune cell fate, contributes to colitis progression.

PDLIM2 knockout mice (-/-) and wildtype littermates (+/+) were assessed for responses to dextran sodium sulphate (DSS)-induced colitis, and to aoxymethane +DSS. Microbiota were assessed using 16s rRNA amplicon sequencing. Mechanistic studies were carried out in Caco-2 cell cultures, and in silico analysis was carried out on single cell RNA sequencing data from patients with Ulcerative colitis or Crohn’s disease.

Compared to PDLIM2 +/+ mice, PDLIM2 -/- mice exhibited exacerbated and unresolved epithelial damage and inflammation accompanied by immune cell infiltration, which was precluded sufficient time to observe tunour development. PDLIM2 -/- mice exhibited altered basal gut microbial diversity, composition and predicted functionality compared to +/+ mice. Interestingly, in +/+ mice, PDLIM2 expression was lost over the course of DSS-induced colitis. Mechanistic studies in Caco-2 enterocyte cell cultures demonstrated that PDLIM2 suppression resulted in impaired cell adhesion signalling and sustained oxidative stress. In silico analysis of single cell RNA seq data sets from patients with ulcerative colitis and Crohn’s disease demonstrated that although PDLIM2 was clearly expressed in normal human colonic epithelial enterocyte populations, its expression declined in both ulcerative colitis and Crohn’s disease. We conclude that PDLIM2 is necessary for intestinal homeostasis through regulation of cell adhesion and antioxidant pathways, while loss of PDLIM2 sustains inflammation and epithelial damage.

## Linked entities

- **Genes:** PDLIM2 (PDZ and LIM domain 2) [NCBI Gene 64236]
- **Proteins:** PDLIM2 (PDZ and LIM domain 2)
- **Diseases:** Ulcerative colitis (MONDO:0005101), Crohn’s disease (MONDO:0005011)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Actb (actin, beta) [NCBI Gene 11461] {aka Actx, E430023M04Rik, beta-actin}, Ptk2 (PTK2 protein tyrosine kinase 2) [NCBI Gene 14083] {aka FADK 1, FAK, FRNK, Fadk, p125FAK}, Pdlim2 (PDZ and LIM domain 2) [NCBI Gene 213019] {aka 4732462F18Rik, Slim}, Mrc1 (mannose receptor, C type 1) [NCBI Gene 17533] {aka CD206, MR}, Sod2 (superoxide dismutase 2, mitochondrial) [NCBI Gene 20656] {aka MnSOD, Sod-2}, Ifng (interferon gamma) [NCBI Gene 15978] {aka IFN-g, If2f, Ifg}, PRKAB1 (protein kinase AMP-activated non-catalytic subunit beta 1) [NCBI Gene 5564] {aka AMPK, HAMPKb}, Tjp1 (tight junction protein 1) [NCBI Gene 21872] {aka ZO1}, Pdcd1 (programmed cell death 1) [NCBI Gene 18566] {aka Ly101, PD-1, Pdc1}, TOMM20 (translocase of outer mitochondrial membrane 20) [NCBI Gene 9804] {aka MAS20, MOM19, TOM20}, SOD2 (superoxide dismutase 2) [NCBI Gene 6648] {aka GC1, GClnc1, IPO-B, IPOB, MNSOD, MVCD6}, Il6 (interleukin 6) [NCBI Gene 16193] {aka Il-6}, Sox6 (SRY (sex determining region Y)-box 6) [NCBI Gene 20679] {aka SOX-LZ}, Nfe2l2 (nuclear factor, erythroid derived 2, like 2) [NCBI Gene 18024] {aka Nrf2}, Cxcl10 (C-X-C motif chemokine ligand 10) [NCBI Gene 15945] {aka C7, CRG-2, INP10, IP-10, IP10, Ifi10}, Nfkb1 (nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105) [NCBI Gene 18033] {aka NF-KB1, NF-kappaB, NF-kappaB1, p105, p50, p50/p105}, Cat (catalase) [NCBI Gene 12359] {aka 2210418N07, Cas-1, Cas1, Cs-1}, Mir214 (microRNA 214) [NCBI Gene 387210] {aka Mirn214, mir-214, mmu-mir-214}, NQO1 (NAD(P)H quinone dehydrogenase 1) [NCBI Gene 1728] {aka DHQU, DIA4, DTD, NMOR1, NMORI, QR1}, Il17a (interleukin 17A) [NCBI Gene 16171] {aka Ctla-8, Ctla8, IL-17, IL-17A, Il17}, Hmox1 (heme oxygenase 1) [NCBI Gene 15368] {aka D8Wsu38e, HO-1, HO1, Hemox, Hmox, Hsp32}, F3 (coagulation factor III, tissue factor) [NCBI Gene 14066] {aka CD142, Cf-3, Cf3, TF}, Cdh1 (cadherin 1) [NCBI Gene 12550] {aka ARC-1, E-cad, Ecad, L-CAM, UVO, Um}, Mtor (mechanistic target of rapamycin kinase) [NCBI Gene 56717] {aka 2610315D21Rik, FRAP, FRAP2, Frap1, RAFT1, RAPT1}, BACH1 (BTB domain and CNC homolog 1) [NCBI Gene 571] {aka BACH-1, BTBD24}, PDLIM2 (PDZ and LIM domain 2) [NCBI Gene 64236] {aka MYSTIQUE, SLIM}, HMOX1 (heme oxygenase 1) [NCBI Gene 3162] {aka HMOX1D, HO-1, HSP32, bK286B10}, Foxp3 (forkhead box P3) [NCBI Gene 20371] {aka JM2, scurfin, sf}, SLC2A1 (solute carrier family 2 member 1) [NCBI Gene 6513] {aka CSE, DYT17, DYT18, DYT9, EIG12, GLUT}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, GPX1 (glutathione peroxidase 1) [NCBI Gene 2876] {aka GPXD, GSHPX1}, Rhoa (ras homolog family member A) [NCBI Gene 11848] {aka Arha, Arha1, Arha2}, Havcr2 (hepatitis A virus cellular receptor 2) [NCBI Gene 171285] {aka TIM-3, Tim3, Timd3}, HK2 (hexokinase 2) [NCBI Gene 3099] {aka HKII, HXK2}, CDH1 (cadherin 1) [NCBI Gene 999] {aka Arc-1, BCDS1, CD324, CDHE, ECAD, LCAM}, FN1 (fibronectin 1) [NCBI Gene 2335] {aka CIG, ED-B, FINC, FN, FNZ, GFND}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, PTK2 (protein tyrosine kinase 2) [NCBI Gene 5747] {aka FADK, FADK 1, FAK, FAK1, FRNK, PPP1R71}, Mki67 (antigen identified by monoclonal antibody Ki 67) [NCBI Gene 17345] {aka D630048A14Rik, Ki-67, Ki67}, Cd3e (CD3 antigen, epsilon polypeptide) [NCBI Gene 12501] {aka CD3, CD3epsilon, T3e}, Tomm20 (translocase of outer mitochondrial membrane 20) [NCBI Gene 67952] {aka 1810060K07Rik, Gm19268, MAS20, MOM19, TOM20, mKIAA0016}, Ctnnb1 (catenin beta 1) [NCBI Gene 12387] {aka Bfc, Catnb, Mesc}, CAT (catalase) [NCBI Gene 847], Tmem219 (transmembrane protein 219) [NCBI Gene 68742] {aka 1110032O16Rik, 2900045G02Rik, IGFBP-3R}, Il10 (interleukin 10) [NCBI Gene 16153] {aka CSIF, If2a, Il-10}, ITGB1 (integrin subunit beta 1) [NCBI Gene 3688] {aka CD29, FNRB, GPIIA, MDF2, MSK12, VLA-BETA}, Hif1a (hypoxia inducible factor 1, alpha subunit) [NCBI Gene 15251] {aka HIF-1-alpha, HIF1-alpha, HIF1alpha, MOP1, bHLHe78}, CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}, Slc2a1 (solute carrier family 2 (facilitated glucose transporter), member 1) [NCBI Gene 20525] {aka GT1, Glut-1, Glut1, M100200, Rgsc200}, NFE2L2 (NFE2 like bZIP transcription factor 2) [NCBI Gene 4780] {aka IMDDHH, NRF2, Nrf-2}, Nos2 (nitric oxide synthase 2, inducible) [NCBI Gene 18126] {aka MAC-NOS, NOS-II, Nos-2, Nos2a, i-NOS, iNOS}
- **Diseases:** diarrhea (MESH:D003967), oesophageal and prostate cancers (MESH:D011471), chronic inflammation (MESH:D007249), mitochondrial (MESH:D028361), dysplasia (MESH:D015792), autoimmune encephalitis (MESH:D020274), cancer (MESH:D009369), gut dysbiosis (MESH:D064806), NAFLD (MESH:D065626), lung cancer (MESH:D008175), rectal bleeding (MESH:D012002), nephropathy (MESH:D007674), IBD (MESH:D015212), TNBC (MESH:D064726), breast, and lung carcinoma (MESH:D001943), bacterial infections (MESH:D001424), parasitic (MESH:D010272), CAC (MESH:D000083023), intestinal injury (MESH:D007410), hyperplasia (MESH:D006965), infectious diseases (MESH:D003141), UC (MESH:D003093), epithelial damage (MESH:D009375), CRC (MESH:D015179), death (MESH:D003643), chronic colitis (MESH:D003092), DSS (MESH:C562576), Crohn's disease (MESH:D003424), weight loss (MESH:D015431)
- **Chemicals:** MitoSOX red (MESH:C000597839), phenol (MESH:D019800), H2O (MESH:D014867), MG132 (MESH:C072553), Bafilomycin A (MESH:C057620), acetic acid (MESH:D019342), SDS (MESH:D012967), Bafilomycin A1 (MESH:C040929), E64 (MESH:C024974), ethanol (MESH:D000431), sodium deoxycholate (MESH:D003840), NaCl (MESH:D012965), methanol (MESH:D000432), bestatin (MESH:C012211), leupeptin (MESH:C032854), AOM (MESH:D001397), azide (MESH:D001386), nitrogen (MESH:D009584), CCCP (MESH:D002258), lactose (MESH:D007785), NP40 (MESH:C010615), pentose phosphate (MESH:D010428), streptomycin (MESH:D013307), H2DCFDA (MESH:C110400), Triton X-100 (MESH:D017830), L-glutamine (MESH:D005973), CO2 (MESH:D002245), sodium pyrophosphate (MESH:C003319), PFA (MESH:C003043), pepstatin A (MESH:C031375), PBS (MESH:D007854), eosin (MESH:D004801), saponin (MESH:D012503), ROS (MESH:D017382), MitoSOX (MESH:C521281), glucose (MESH:D005947), Crystal violet (MESH:D005840), hydrogen peroxide (MESH:D006861), superoxide (MESH:D013481), Alexa 488 (-), haematoxylin (MESH:D006416), glycerol (MESH:D005990), penicillin (MESH:D010406), HEME (MESH:D006418), amino acid (MESH:D000596), beta-glycerophosphate (MESH:C031463), rhamnose (MESH:D012210), carbohydrate (MESH:D002241), fatty acid (MESH:D005227), AEBSF (MESH:C002010), oil (MESH:D009821), Alexa Fluor 488 (MESH:C000711379), coenzyme A (MESH:D003065)
- **Species:** Roseburia (genus) [taxon 841], Actinomycetota (actinobacteria, phylum) [taxon 201174], Clostridia (class) [taxon 186801], Ruminococcus (genus) [taxon 1263], Mus musculus (house mouse, species) [taxon 10090], Eubacterium (genus) [taxon 1730], Prevotella (genus) [taxon 838], Lactobacillus (genus) [taxon 1578], Bacillota (clostridial firmicutes, phylum) [taxon 1239], Eubacterium xylanophilum (species) [taxon 39497], Bacteroidota (Bacteroides-Cytophaga-Flexibacter group, phylum) [taxon 976], Bacteroides (genus) [taxon 816], Rattus norvegicus (brown rat, species) [taxon 10116], Homo sapiens (human, species) [taxon 9606], Felis catus (cat, species) [taxon 9685]
- **Cell lines:** ShPDLIM2 — Homo sapiens (Human), Colon carcinoma, Cancer cell line (CVCL_A628), Caco-2 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0025), C57BL/6J — Mus musculus (Mouse), Transformed cell line (CVCL_C0MW)

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12929155/full.md

## References

68 references — full list in the complete paper: https://tomesphere.com/paper/PMC12929155/full.md

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Source: https://tomesphere.com/paper/PMC12929155