# A comprehensive review of clear cell stromal tumor of the lung: integrating clinicopathology and molecular pathogenesis

**Authors:** Liping Luo, Liang Lv, Ying Zeng

PMC · DOI: 10.3389/fonc.2026.1760048 · Frontiers in Oncology · 2026-02-10

## TL;DR

This paper reviews a rare lung tumor called clear cell stromal tumor, focusing on its clinicopathological features and molecular characteristics.

## Contribution

The paper provides a comprehensive synthesis of current knowledge on a newly recognized and rare lung tumor.

## Key findings

- CCST is characterized by a YAP1::TFE3 gene fusion and specific histological features.
- Diagnosis is challenging due to the tumor's rarity and lack of specific markers beyond TFE3.
- Only thirty cases have been reported, highlighting the need for further research.

## Abstract

Clear cell stromal tumor (CCST) is a newly recognized mesenchymal neoplasm of the lung, with a recurrent YAP1::TFE3 gene fusion in most cases and characterized histologically by spindle, epithelioid cells, with variably clear to pale eosinophilic cytoplasm and prominent vascularity. Due to its rarity and the absence of specific immunohistochemical markers beyond TFE3, diagnosis remains challenging. Currently, only thirty cases have been documented. This narrative literature review synthesizes current advances to enhance understanding of this entity.

## Linked entities

- **Genes:** YAP1 (Yes1 associated transcriptional regulator) [NCBI Gene 10413], TFE3 (transcription factor binding to IGHM enhancer 3) [NCBI Gene 7030]

## Full-text entities

- **Genes:** LPL (lipoprotein lipase) [NCBI Gene 4023] {aka HDLCQ11, LIPD}, ENO2 (enolase 2) [NCBI Gene 2026] {aka HEL-S-279, NSE}, CA9 (carbonic anhydrase 9) [NCBI Gene 768] {aka CAIX, MN}, TFE3 (transcription factor binding to IGHM enhancer 3) [NCBI Gene 7030] {aka MRXSPF, RCCP2, RCCX1, TFEA, bHLHe33}, SMN1 (survival of motor neuron 1, telomeric) [NCBI Gene 6606] {aka BCD541, GEMIN1, SMA, SMA1, SMA2, SMA3}, CD34 (CD34 molecule) [NCBI Gene 947], VEGFA (vascular endothelial growth factor A) [NCBI Gene 7422] {aka L-VEGF, MVCD1, VEGF, VPF}, ERG (ETS transcription factor ERG) [NCBI Gene 2078] {aka LMPHM14, erg-3, p55}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, YAP1 (Yes1 associated transcriptional regulator) [NCBI Gene 10413] {aka COB1, YAP, YAP-1, YAP2, YAP65, YKI}, PTEN (phosphatase and tensin homolog) [NCBI Gene 5728] {aka 10q23del, BZS, CWS1, DEC, GLM2, MHAM}, BRAF (B-Raf proto-oncogene, serine/threonine kinase) [NCBI Gene 673] {aka B-RAF1, B-raf, BRAF-1, BRAF1, NS7, RAFB1}, PTPRC (protein tyrosine phosphatase receptor type C) [NCBI Gene 5788] {aka B220, CD45, CD45R, GP180, IMD105, L-CA}, KRT7 (keratin 7) [NCBI Gene 3855] {aka CK7, K2C7, K7, SCL}, MITF (melanocyte inducing transcription factor) [NCBI Gene 4286] {aka CMM8, COMMAD, MI, MITF-A, WS2, WS2A}, SPATA2 (spermatogenesis associated 2) [NCBI Gene 9825] {aka PD1, PPP1R145, tamo}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, GLI1 (GLI family zinc finger 1) [NCBI Gene 2735] {aka GLI, PAPA8, PPD1}, SOX10 (SRY-box transcription factor 10) [NCBI Gene 6663] {aka DOM, PCWH, SOX-10, WS2E, WS4, WS4C}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, PECAM1 (platelet and endothelial cell adhesion molecule 1) [NCBI Gene 5175] {aka CD31, CD31/EndoCAM, GPIIA', PECA1, PECAM-1, endoCAM}, STAT6 (signal transducer and activator of transcription 6) [NCBI Gene 6778] {aka D12S1644, HIES6, IL-4-STAT, STAT6B, STAT6C}, VIM (vimentin) [NCBI Gene 7431], CAMTA1 (calmodulin binding transcription activator 1) [NCBI Gene 23261] {aka CANPMR, CECBA}, NCAM1 (neural cell adhesion molecule 1) [NCBI Gene 4684] {aka CD56, MSK39, NCAM}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, PIK3CA (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) [NCBI Gene 5290] {aka CCM4, CLAPO, CLOVE, CWS5, HMH, MCAP}, YWHAQ (tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta) [NCBI Gene 10971] {aka 14-3-3, 1C5, HS1}, TTF1 (transcription termination factor 1) [NCBI Gene 7270] {aka TTF-1, TTF-I}, FCER2 (Fc epsilon receptor II) [NCBI Gene 2208] {aka BLAST-2, CD23, CD23A, CLEC4J, FCE2, FCErII}, DES (desmin) [NCBI Gene 1674] {aka CDCD3, CSM1, CSM2, LGMD1D, LGMD1E, LGMD2R}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, MUC1 (mucin 1, cell surface associated) [NCBI Gene 4582] {aka ADMCKD, ADMCKD1, ADTKD2, CA 15-3, CD227, Ca15-3}, CMPK1 (cytidine/uridine monophosphate kinase 1) [NCBI Gene 51727] {aka CK, CMK, CMPK, UMK, UMP-CMPK, UMPK}, MLANA (melan-A) [NCBI Gene 2315] {aka MART-1, MART1}, HNF1B (HNF1 homeobox B) [NCBI Gene 6928] {aka ADTKD3, FJHN, HNF-1-beta, HNF-1B, HNF1beta, HNF2}, TP63 (tumor protein p63) [NCBI Gene 8626] {aka AIS, B(p51A), B(p51B), EEC3, KET, LMS}, S100A1 (S100 calcium binding protein A1) [NCBI Gene 6271] {aka S100, S100-alpha, S100A}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, PAX8 (paired box 8) [NCBI Gene 7849] {aka PAX-8}, NAPSA (napsin A aspartic peptidase) [NCBI Gene 9476] {aka KAP, Kdap, NAP1, NAPA, NR1H2-AS1, SNAPA}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, GFAP (glial fibrillary acidic protein) [NCBI Gene 2670] {aka ALXDRD}, SYNM (synemin) [NCBI Gene 23336] {aka DMN, SYN}
- **Diseases:** tumorigenesis (MESH:D063646), hemoptysis (MESH:D006469), pneumonia (MESH:D011014), mesenchymal tumors (MESH:C535700), chest pain (MESH:D002637), Sclerosing pneumocytoma (MESH:D012598), primary pulmonary and pleural tumors (MESH:D010997), fever (MESH:D005334), sarcomas (MESH:D012509), Clear Cell Stromal Tumor of the Lung (MESH:D055752), Melanoma (MESH:D008545), inflammatory (MESH:D007249), nodal disease (MESH:D004194), Neoplasms (MESH:D009369), vascular abnormalities (MESH:D014652), lung lesions (MESH:D008171), clear cell stromal tumour of the lung (MESH:D008175), dyspnea (MESH:D004417), metastatic carcinomas (MESH:C538445), aggressiveness (MESH:D010554), PEComa (MESH:D054973), Hemangioblastoma (MESH:D018325), Clear cell sarcoma (MESH:D018227), thoracic neoplasms (MESH:D013899), Solitary fibrous tumor (MESH:D054364), benign lesions (MESH:D001932), CCST (MESH:D002292), Necrosis (MESH:D009336), sugar (MESH:D007787), synovial sarcoma (MESH:D013584), thrombosis (MESH:D013927), metastases (MESH:D009362), rheumatoid arthritis (MESH:D001172), EHE (MESH:D018323), cough (MESH:D003371), cerebral infarction (MESH:D002544), primary (MESH:D010538), von Hippel-Lindau (VHL) syndrome (MESH:D006623), infection (MESH:D007239)
- **Chemicals:** glycogen (MESH:D006003), lipid (MESH:D008055), H&amp;E (MESH:D006371), Periodic (-)
- **Species:** Nicotiana tabacum (American tobacco, species) [taxon 4097], Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

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## References

18 references — full list in the complete paper: https://tomesphere.com/paper/PMC12929146/full.md

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Source: https://tomesphere.com/paper/PMC12929146