# The gut microbiome in graft-versus-host disease: mechanisms of immune modulation and therapeutic approaches

**Authors:** Adonai Blessington Moses, Albert C. Yeh

PMC · DOI: 10.1080/19490976.2026.2631224 · Gut Microbes · 2026-02-18

## TL;DR

This review explores how gut microbes influence graft-versus-host disease and how modifying the microbiome could improve treatment outcomes.

## Contribution

The paper provides a comprehensive overview of the role of gut microbiota in GvHD and evaluates therapeutic strategies based on clinical studies.

## Key findings

- Gut microbiota significantly influences the initiation and progression of GvHD through innate and adaptive immune mechanisms.
- Over 40 clinical studies show that modifying the microbiome can improve GvHD outcomes using approaches like probiotics and fecal microbiota transplantation.
- Commensal microbes in the gut represent a vast and underexplored source of T-cell antigens that impact GvHD.

## Abstract

Graft-versus-host disease (GvHD) remains a major complication of allogeneic hematopoietic stem cell transplantation and occurs when T cells from the donor graft target recipient-derived antigen on host tissue. The involvement of the gastrointestinal (GI) tract drives morbidity and mortality—not coincidentally, the GI tract also harbors the most complex and abundant human microbial reservoir. In this review, we first revisit how the microbiota initiates, propagates, and protects against GvHD in the context of both innate and adaptive immunity. Historically, the impact of the microbiota on GvHD has been ascribed primarily to the activation of innate immunity, setting the stage for donor alloreactivity. Although established models of GvHD focus on donor–host genetic disparity as the principal driver of donor T-cell activation, commensal microbes in the GI tract, whose collective gene content exceeds that of the human genome by more than two orders of magnitude, constitutes an immense and poorly understood source of potential T-cell antigens. We next discuss the evolution of therapeutic approaches aimed at modifying the microbiota to improve GvHD outcomes, incorporating over 40 clinical studies spanning the last 40 years, from broad decontamination strategies to pre/probiotic approaches and targeted ecosystem replacement, including fecal microbiota transplantation.

## Linked entities

- **Diseases:** graft-versus-host disease (MONDO:0013730), GvHD (MONDO:0013730)

## Full-text entities

- **Genes:** IL2 (interleukin 2) [NCBI Gene 3558] {aka IL-2, TCGF, lymphokine}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, IL17A (interleukin 17A) [NCBI Gene 3605] {aka CTLA-8, CTLA8, IL-17, IL-17A, IL17, ILA17}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, NLRP3 (NLR family pyrin domain containing 3) [NCBI Gene 114548] {aka AGTAVPRL, AII, AVP, C1orf7, CIAS1, CLR1.1}, Tlr2 (toll-like receptor 2) [NCBI Gene 24088] {aka Ly105}, Tlr5 (toll-like receptor 5) [NCBI Gene 53791], IL12B (interleukin 12B) [NCBI Gene 3593] {aka CLMF, CLMF2, IL-12B, IMD28, IMD29, NKSF}, FOXP3 (forkhead box P3) [NCBI Gene 50943] {aka AIID, DIETER, IPEX, JM2, PIDX, XPID}, PMCH (pro-melanin concentrating hormone) [NCBI Gene 5367] {aka MCH, ppMCH}, Myd88 (myeloid differentiation primary response gene 88) [NCBI Gene 17874], TRBV20OR9-2 (T cell receptor beta variable 20/OR9-2 (non-functional)) [NCBI Gene 6962] {aka CDR3, TCRBV20S2, TCRBV2O, TCRBV2S2O}, mucin [NCBI Gene 100508689], IL22 (interleukin 22) [NCBI Gene 50616] {aka IL-21, IL-22, IL-D110, IL-TIF, ILTIF, TIFIL-23}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, Il1b (interleukin 1 beta) [NCBI Gene 16176] {aka IL-1beta, Il-1b}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, HLA-C (major histocompatibility complex, class I, C) [NCBI Gene 3107] {aka D6S204, HLA-JY3, HLAC, HLC-C, MHC, PSORS1}, Tlr9 (toll-like receptor 9) [NCBI Gene 81897], AHR (aryl hydrocarbon receptor) [NCBI Gene 196] {aka FVH3, RP85, bHLHe76}, H2 (histocompatibility-2, MHC) [NCBI Gene 111364] {aka H-2, MHC-II}, RAG1 (recombination activating 1) [NCBI Gene 5896] {aka RAG-1, RNF74}
- **Diseases:** mucosal injury (MESH:D052016), intestinal injury (MESH:D007410), febrile neutropenia (MESH:D064147), bloodstream infection (MESH:D018805), tissue injury (MESH:D017695), C. difficile infection (MESH:D003015), colitis (MESH:D003092), gastrointestinal infection (MESH:D005767), infection (MESH:D007239), Crohn's disease (MESH:D003424), oral mucositis (MESH:D013280), hematologic malignancies (MESH:D019337), inflammation (MESH:D007249), dysbiosis (MESH:D064806), GI GvHD (MESH:D006086), neutropenic (MESH:D044504)
- **Chemicals:** glutamine (MESH:D005973), steroid (MESH:D013256), ATP (MESH:D000255), resistant starch (MESH:D000084922), LPS (MESH:D008070), tryptophan (MESH:D014364), SCFA (MESH:D005232), indole (MESH:C030374), bile acids (MESH:D001647), polydextrose (MESH:C033375), Amylofiber SH (-), rifaximin (MESH:D000078262), 3-indoxyl sulfate (MESH:D007200), oligosaccharides (MESH:D009844), piperacillin/tazobactam (MESH:D000077725), CpG (MESH:C015772), butyrate (MESH:D002087), luminal (MESH:D010634), carbapenem (MESH:D015780), ruxolitinib (MESH:C540383), fiber (MESH:D004043), uric acid (MESH:D014527), glycans (MESH:D011134), lactosucrose (MESH:C081752), metronidazole (MESH:D008795), lipoteichoic acid (MESH:C009900), ciprofloxacin (MESH:D002939)
- **Species:** Bacillota (clostridial firmicutes, phylum) [taxon 1239], Enterobacteriaceae (enterobacteria, family) [taxon 543], Eubacteriales (order) [taxon 186802], Blautia (genus) [taxon 572511], gut metagenome (species) [taxon 749906], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Faecalibacterium prausnitzii (species) [taxon 853], Homo sapiens (human, species) [taxon 9606], Enterocloster bolteae (species) [taxon 208479], Bacteroides ovatus (species) [taxon 28116], Enterococcus (genus) [taxon 1350], Roseburia (genus) [taxon 841], Toxoplasma gondii (species) [taxon 5811], Bacteroides thetaiotaomicron (species) [taxon 818], Clostridia (class) [taxon 186801], Ruminococcus (genus) [taxon 1263], Bifidobacterium longum (species) [taxon 216816], Faecalibacterium (genus) [taxon 216851], Helicobacter hepaticus (species) [taxon 32025], Escherichia coli (E. coli, species) [taxon 562], Mus musculus (house mouse, species) [taxon 10090], Lacticaseibacillus rhamnosus (species) [taxon 47715]

## Full text

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## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12928662/full.md

## References

101 references — full list in the complete paper: https://tomesphere.com/paper/PMC12928662/full.md

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Source: https://tomesphere.com/paper/PMC12928662