# Aging-caused the changes of the gut microbiota drive intestinal barrier dysfunction and increase sepsis susceptibility

**Authors:** Huoyan Liang, Xianfei Ding, Shaohua Liu, Shuai Tong, Xu Wang, Zihao Zhang, Wei Wang, Xiaojuan Zhang, Yangyang Yuan, Yong Jiang, Tongwen Sun

PMC · DOI: 10.1080/19490976.2026.2630475 · Gut Microbes · 2026-02-21

## TL;DR

Aging changes gut bacteria, which worsens intestinal barriers and increases sepsis risk through histamine production.

## Contribution

Identifies Klebsiella aerogenes and histamine as key drivers of sepsis susceptibility in aging via impaired gut barrier function.

## Key findings

- Aged septic hosts show increased Klebsiella aerogenes abundance linked to higher histamine production.
- Histamine impairs intestinal barrier function by inhibiting Nlrp6 and autophagy in sepsis.
- Modulating histamine or overexpressing Nlrp6 reduces inflammation in aged septic mice.

## Abstract

Physiological and pathological changes associated with aging contribute to deteriorating disease prognosis in sepsis. However, the mechanisms by which these disturbances exacerbate inflammation remain underexplored. In this study, fecal samples were collected from aged and young septic patients and mice and subsequently transplanted into young pseudo-germ-free mice via fecal microbiota transplantation. Fecal, colon tissue, and blood samples were collected to be used 16S rDNA sequencing to characterize the gut microbiota, histopathological examination, enzyme-linked immunosorbent assay and FITC-dextran intestinal permeability assay to assess gut injury and gut barrier function. Additionally, nontargeted and targeted metabolomics were used to identify differential metabolites in the feces of aged and young septic mice. To further validate the roles of specific bacterial strains and their metabolites in sepsis, genetically engineered bacteria were used in both in vivo and in vitro experiments. The results showed that an increased abundance of Klebsiella aerogenes (K. aero) in aged hosts, which led to elevated histamine (HA) production and exacerbated intestinal barrier dysfunction. Importantly, K. aero strains carrying a histidine decarboxylase gene variant were identified as major HA producers. Mechanistically, HA was shown to drive intestinal barrier dysfunction by inhibiting Nlrp6 expression and its subsequent binding to LC3, thereby impairing autophagy. Treatments that modulated HA levels or overexpressed Nlrp6 ameliorated inflammation in septic mice. These findings suggest that targeting the HA-Nlrp6-LC3 axis could offer a novel therapeutic approach for managing sepsis, particularly in aged populations.

## Linked entities

- **Genes:** NLRP6 (NLR family pyrin domain containing 6) [NCBI Gene 171389], MAP1LC3A (microtubule associated protein 1 light chain 3 alpha) [NCBI Gene 84557]
- **Chemicals:** histamine (PubChem CID 774)
- **Species:** Klebsiella aerogenes (taxon 548)

## Full-text entities

- **Genes:** Il6 (interleukin 6) [NCBI Gene 16193] {aka Il-6}, MAP1LC3A (microtubule associated protein 1 light chain 3 alpha) [NCBI Gene 84557] {aka ATG8E, LC3, LC3A, MAP1ALC3, MAP1BLC3}, Map1lc3a (microtubule-associated protein 1 light chain 3 alpha) [NCBI Gene 66734] {aka 1010001H21Rik, 4922501H04Rik, LC3, LC3a}, Esr2 (estrogen receptor 2 (beta)) [NCBI Gene 13983] {aka ER[b], ERbeta, Estrb}, Sqstm1 (sequestosome 1) [NCBI Gene 18412] {aka A170, OSF-6, Osi, STAP, STONE14, p62}, ANXA5 (annexin A5) [NCBI Gene 308] {aka ANX5, CPB-I, ENX2, HEL-S-7, PP4, RPRGL3}, POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, ATG7 (autophagy related 7) [NCBI Gene 10533] {aka APG7-LIKE, APG7L, GSA7, SCAR31}, Atg7 (autophagy related 7) [NCBI Gene 74244] {aka 1810013K23Rik, Agp7, Apg7l, Atg7l, Gm21553}, CLDN3 (claudin 3) [NCBI Gene 1365] {aka C7orf1, CPE-R2, CPETR2, HRVP1, RVP1}, Ccl2 (C-C motif chemokine ligand 2) [NCBI Gene 20296] {aka HC11, JE, MCAF, MCP-1, MCP1, SMC-CF}, Cldn3 (claudin 3) [NCBI Gene 12739] {aka Cpetr2, mRVP1}, OCLN (occludin) [NCBI Gene 100506658] {aka BLCPMG, PPP1R115, PTORCH1}, Il1b (interleukin 1 beta) [NCBI Gene 16176] {aka IL-1beta, Il-1b}, Ocln (occludin) [NCBI Gene 18260] {aka Ocl}, Nfe2l2 (nuclear factor, erythroid derived 2, like 2) [NCBI Gene 18024] {aka Nrf2}, Nfkb1 (nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105) [NCBI Gene 18033] {aka NF-KB1, NF-kappaB, NF-kappaB1, p105, p50, p50/p105}, Nlrp6 (NLR family, pyrin domain containing 6) [NCBI Gene 101613] {aka Avr, Nalp6, Navr, Navr/Avr, Non-AVR, Pypaf5}, CST12P (cystatin 12, pseudogene) [NCBI Gene 106478911] {aka Cst, Ctes4, E2}, NLRP6 (NLR family pyrin domain containing 6) [NCBI Gene 171389] {aka AVR, CLR11.4, NALP6, NAVR, NAVR/AVR, PAN3}, Hdc (histidine decarboxylase) [NCBI Gene 15186] {aka Hdc-a, Hdc-c, Hdc-e, Hdc-s}, Glb1 (galactosidase, beta 1) [NCBI Gene 12091] {aka Bge, Bgl, Bgl-e, Bgl-s, Bgl-t, Bgs}, NUP62 (nucleoporin 62) [NCBI Gene 23636] {aka IBSN, SNDI, p62}, Cotl1 (coactosin like F-actin binding protein 1) [NCBI Gene 72042] {aka 1810074P22Rik, 2010004C08Rik, Clp}, CLDN1 (claudin 1) [NCBI Gene 9076] {aka CLD1, ILVASC, SEMP1}, Muc2 (mucin 2) [NCBI Gene 17831] {aka 2010015E03Rik, MCM, wnn}, Cxcl1 (C-X-C motif chemokine ligand 1) [NCBI Gene 14825] {aka Fsp, Gro1, KC, Mgsa, N51, Scyb1}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, Cldn1 (claudin 1) [NCBI Gene 12737]
- **Diseases:** ventilator-associated pneumonia (MESH:D053717), ruminal acidosis (MESH:D000079562), hypoxic (MESH:D002534), dysbiosis (MESH:D064806), inflammation (MESH:D007249), metabolic syndrome (MESH:D024821), Sepsis (MESH:D018805), infectious diseases (MESH:D003141), immune dysregulation (OMIM:614878), septic shock (MESH:D012772), Septic (MESH:D001170), intestinal damage (MESH:D007410), liver damage (MESH:D056486), cardiac injury (MESH:D006331), liver injuries (MESH:D017093), bacterial infections (MESH:D001424), myocardial toxicity (MESH:D064420), HA (MESH:D003027), acute myocardial infarction (MESH:D009203), gut infection (MESH:D007239), fatalities (MESH:C565541), colitis (MESH:D003092), Septic peritonitis (MESH:D010538), death (MESH:D003643), subarachnoid hemorrhage (MESH:D013345), gut injury (MESH:C536735), nosocomial infections (MESH:D003428), HDC-deficient (MESH:D015325)
- **Chemicals:** ethanol (MESH:D000431), kanamycin (MESH:D007612), FITC-dextran (MESH:C015219), Alcian Blue (MESH:D000423), SDS (MESH:D012967), copper (MESH:D003300), vancomycin (MESH:D014640), TRIzol (MESH:C411644), N-methylserotonin (MESH:C008494), amide (MESH:D000577), H2O (MESH:D014867), acetonitrile (MESH:C032159), metronidazole (MESH:D008795), histidine (MESH:D006639), benzoyl chloride (MESH:C013409), formic acid (MESH:C030544), phosphate (MESH:D010710), osmium tetroxide (MESH:D009993), Paraffin (MESH:D010232), methanol (MESH:D000432), HA (MESH:D006632), sodium chloride (MESH:D012965), DAPI (MESH:C007293), neomycin sulfate (MESH:D009355), glutaraldehyde (MESH:D005976), LPS (MESH:D008070), ammonium acetate (MESH:C018824), paraformaldehyde (MESH:C003043), sodium carbonate (MESH:C005686), ampicillin (MESH:D000667), Amp (MESH:D000249), IPTG (MESH:D007544), amines (MESH:D000588), X-Gal (MESH:C044888), CTAB (MESH:D000077286), amino acids (MESH:D000596), K. (MESH:D011188), tetracycline (MESH:D013752), hematoxylin (MESH:D006416), PI (MESH:D011419), H2O2 (MESH:D006861), ABX (-), H&amp;E (MESH:D006371)
- **Species:** Bacteroides ovatus (species) [taxon 28116], Adeno-associated virus 9 (no rank) [taxon 235455], Klebsiella pneumoniae (species) [taxon 573], Mus musculus (house mouse, species) [taxon 10090], Adeno-associated virus (species) [taxon 272636], Klebsiella aerogenes (species) [taxon 548], Bos taurus (bovine, species) [taxon 9913], Escherichia coli DH5[alpha] (strain) [taxon 668369], Homo sapiens (human, species) [taxon 9606], Rattus norvegicus (brown rat, species) [taxon 10116], Klebsiella oxytoca (species) [taxon 571], Hepatovirus A (no rank) [taxon 12092]
- **Cell lines:** h032 — Trichoplusia ni (Cabbage looper), Spontaneously immortalized cell line (CVCL_Z431), /6 — Homo sapiens (Human), Tongue squamous cell carcinoma, Cancer cell line (CVCL_5985), Caco2 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0025)

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## Figures

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## References

60 references — full list in the complete paper: https://tomesphere.com/paper/PMC12928652/full.md

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Source: https://tomesphere.com/paper/PMC12928652