# ENPP3 drives ccRCC progression by cGAMP hydrolysis and STING–IFN suppression

**Authors:** Jiaxing Ma, Yayun Wu, Guangzheng Lin, Xin Sun, Hao Geng, Tao Zhang, Dexin Yu

PMC · DOI: 10.1080/15384047.2026.2632995 · Cancer Biology & Therapy · 2026-02-19

## TL;DR

ENPP3 promotes kidney cancer growth by blocking immune signals, and targeting it could boost cancer treatments.

## Contribution

ENPP3 is identified as a hypoxia-driven immune checkpoint enzyme in ccRCC that suppresses anti-tumor immunity via cGAMP hydrolysis.

## Key findings

- ENPP3 is upregulated in ccRCC and linked to poor prognosis.
- ENPP3 inhibition or blockade enhances anti-tumor immunity and synergizes with anti-PD-L1.
- ENPP3 depletion increases extracellular cGAMP and activates STING-IFN signaling in macrophages.

## Abstract

Clear-cell renal cell carcinoma (ccRCC) is an immune-desert tumor. This study investigates the role of ectonucleotide pyrophosphatase/phosphodiesterase 3 (ENPP3) as a potential therapeutic target and immune-checkpoint enzyme in ccRCC.

ENPP3 expression and its link to hypoxia and prognosis were analyzed in ccRCC. Functional roles were tested using gain/loss-of-function studies in vitro and in xenograft models, followed by therapeutic anti-ENPP3 antibody administration, alone or with anti-PD-L1. Mechanisms were explored via promoter analysis, cGAMP measurement, flow cytometry, cytokine profiling, and in vivo neutralization with STING- or interferon-α/β receptor-1 (IFNAR1) blocking antibodies.

ENPP3 is hypoxia-inducible via HIF-1α, upregulated in ccRCC, and predicts poor prognosis. ENPP3 overexpression accelerated tumor growth, while its knockdown or antibody blockade inhibited progression and synergized with anti-PD-L1. Mechanistically, ENPP3 hydrolyzes extracellular cGAMP. Its depletion elevated extracellular cGAMP, expanded anti-tumor immune cells (M1 macrophages, cDC1s, and cytotoxic T cells), reduced Tregs, and induced a STING- and IFNAR1-dependent type I interferon signature in macrophages. The anti-tumor efficacy of ENPP3 blockade was abrogated by IFNAR1 inhibition.

ENPP3 is a hypoxia-driven, cGAMP-targeting innate immune checkpoint in ccRCC. Its inhibition reactivates STING-dependent anti-tumor immunity, providing a strong preclinical rationale for targeting ENPP3 therapeutically.

## Linked entities

- **Genes:** ENPP3 (ectonucleotide pyrophosphatase/phosphodiesterase 3) [NCBI Gene 5169], HIF1A (hypoxia inducible factor 1 subunit alpha) [NCBI Gene 3091], STING1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 340061], IFNAR1 (interferon alpha and beta receptor subunit 1) [NCBI Gene 3454]
- **Diseases:** clear-cell renal cell carcinoma (MONDO:0005005), ccRCC (MONDO:0007763)

## Full-text entities

- **Genes:** CCL4 (C-C motif chemokine ligand 4) [NCBI Gene 6351] {aka ACT2, AT744.1, G-26, HC21, LAG-1, LAG1}, GZMB (granzyme B) [NCBI Gene 3002] {aka C11, CCPI, CGL-1, CGL1, CSP-B, CSPB}, SIRPA (signal regulatory protein alpha) [NCBI Gene 140885] {aka BIT, CD172A, MFR, MYD-1, MYD1, P84}, IFNB1 (interferon beta 1) [NCBI Gene 3456] {aka IFB, IFF, IFN-beta, IFNB}, HIF1A (hypoxia inducible factor 1 subunit alpha) [NCBI Gene 3091] {aka HIF-1-alpha, HIF-1A, HIF-1alpha, HIF1, HIF1-ALPHA, MOP1}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, CCL7 (C-C motif chemokine ligand 7) [NCBI Gene 6354] {aka FIC, MARC, MCP-3, MCP3, NC28, SCYA6}, Ccl12 (C-C motif chemokine ligand 12) [NCBI Gene 20293] {aka MCP-5, Scya12}, IFNA1 (interferon alpha 1) [NCBI Gene 3439] {aka IFL, IFN, IFN-ALPHA, IFN-alphaD, IFNA13, IFNA@}, Foxp3 (forkhead box P3) [NCBI Gene 20371] {aka JM2, scurfin, sf}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, ITGAX (integrin subunit alpha X) [NCBI Gene 3687] {aka CD11C, SLEB6}, ENPP1 (ectonucleotide pyrophosphatase/phosphodiesterase 1) [NCBI Gene 5167] {aka ARHR2, COLED, M6S1, NPP1, NPPS, PC-1}, IL2 (interleukin 2) [NCBI Gene 3558] {aka IL-2, TCGF, lymphokine}, ENPP3 (ectonucleotide pyrophosphatase/phosphodiesterase 3) [NCBI Gene 5169] {aka B10, CD203c, NPP3, PD-IBETA, PDNP3}, CD47 (CD47 molecule) [NCBI Gene 961] {aka IAP, MER6, OA3}, ITGAM (integrin subunit alpha M) [NCBI Gene 3684] {aka CD11B, CR3A, HNA-4, MAC-1, MAC1A, MO1A}, ACTB (actin beta) [NCBI Gene 60] {aka BKRNS, BNS, BRWS1, CSMH, DDS1, PS1TP5BP1}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, Usp18 (ubiquitin specific peptidase 18) [NCBI Gene 24110] {aka 1110058H21Rik, UBP43, Ubp15}, IFIT1 (interferon induced protein with tetratricopeptide repeats 1) [NCBI Gene 3434] {aka C56, G10P1, IFI-56, IFI-56K, IFI56, IFIT-1}, CGAS (cyclic GMP-AMP synthase) [NCBI Gene 115004] {aka C6orf150, D4, MB21D1, h-cGAS}, CD69 (CD69 molecule) [NCBI Gene 969] {aka AIM, BL-AC/P26, CLEC2C, EA1, GP32/28, MLR-3}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, CXCL10 (C-X-C motif chemokine ligand 10) [NCBI Gene 3627] {aka C7, IFI10, INP10, IP-10, SCYB10, crg-2}, Cd274 (CD274 antigen) [NCBI Gene 60533] {aka A530045L16Rik, B7h1, Pdcd1l1, Pdcd1lg1, Pdl1}, Oas3 (2'-5' oligoadenylate synthetase 3) [NCBI Gene 246727] {aka Oasl10}, USP18 (ubiquitin specific peptidase 18) [NCBI Gene 11274] {aka ISG43, PTORCH2, UBP43}, VHL (von Hippel-Lindau tumor suppressor) [NCBI Gene 7428] {aka HRCA1, RCA1, VHL1, pVHL}, IRF3 (interferon regulatory factor 3) [NCBI Gene 3661] {aka IIAE7}, PPP2CA (protein phosphatase 2 catalytic subunit alpha) [NCBI Gene 5515] {aka HJS3, NEDLBA, PP2Ac, PP2CA, PP2Calpha, RP-C}, Adgre1 (adhesion G protein-coupled receptor E1) [NCBI Gene 13733] {aka DD7A5-7, EGF-TM7, Emr1, F4/80, Gpf480, Ly71}, CCL3 (C-C motif chemokine ligand 3) [NCBI Gene 6348] {aka G0S19-1, LD78, LD78ALPHA, MIP-1-alpha, MIP1A, SCI}, Ifit1 (interferon-induced protein with tetratricopeptide repeats 1) [NCBI Gene 15957] {aka GARG-16, IFI-56K, ISG56, Ifi56, P56}, STING1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 340061] {aka ERIS, MITA, MPYS, NET23, SAVI, STING}, IL2RA (interleukin 2 receptor subunit alpha) [NCBI Gene 3559] {aka CD25, IDDM10, IL2R, IMD41, TCGFR, p55}, Itgae (integrin alpha E, epithelial-associated) [NCBI Gene 16407] {aka A530055J10, CD103, aM290, alpha-E1, alpha-M290}, CCL5 (C-C motif chemokine ligand 5) [NCBI Gene 6352] {aka D17S136E, RANTES, SCYA5, SIS-delta, SISd, TCP228}, D9Mgc45e (DNA segment, Chr 9, MRC UK Mouse Genome Centre 45 expressed) [NCBI Gene 28134] {aka CD3}, Cd4 (CD4 antigen) [NCBI Gene 12504] {aka L3T4, Ly-4}, STAT1 (signal transducer and activator of transcription 1) [NCBI Gene 6772] {aka CANDF7, IMD31A, IMD31B, IMD31C, ISGF-3, STAT91}, POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, FOXP3 (forkhead box P3) [NCBI Gene 50943] {aka AIID, DIETER, IPEX, JM2, PIDX, XPID}, IFNA8 (interferon alpha 8) [NCBI Gene 3445] {aka IFN-alphaB}, IL12B (interleukin 12B) [NCBI Gene 3593] {aka CLMF, CLMF2, IL-12B, IMD28, IMD29, NKSF}, Cd8a (CD8 subunit alpha) [NCBI Gene 12525] {aka Ly-2, Ly-35, Ly-B, Lyt-2}, Ifnb1 (interferon beta 1, fibroblast) [NCBI Gene 15977] {aka IFN-beta, IFNB, If1da1, Ifb}, Mrc1 (mannose receptor, C type 1) [NCBI Gene 17533] {aka CD206, MR}, OAS3 (2'-5'-oligoadenylate synthetase 3) [NCBI Gene 4940] {aka p100, p100OAS}, Il2ra (interleukin 2 receptor, alpha chain) [NCBI Gene 16184] {aka CD25, Il2r, Ly-43}, CRYGC (crystallin gamma C) [NCBI Gene 1420] {aka CCL, CRYG3, CTRCT2}, Itgax (integrin alpha X) [NCBI Gene 16411] {aka Cd11c, Cr4, N418}, Ccl3 (C-C motif chemokine ligand 3) [NCBI Gene 20302] {aka G0S19-1, LD78alpha, MIP-1alpha, MIP1-(a), MIP1-alpha, Mip1a}, Apc (APC, WNT signaling pathway regulator) [NCBI Gene 11789] {aka CC1, Min, mAPC}, PDCD1 (programmed cell death 1) [NCBI Gene 5133] {aka ADMIO4, AIMTBS, CD279, PD-1, PD1, SLEB2}, Ccl7 (C-C motif chemokine ligand 7) [NCBI Gene 20306] {aka MCP-3, Scya7, fic, marc, mcp3}, Cd69 (CD69 antigen) [NCBI Gene 12515] {aka 5830438K24Rik, AIM, VEA}, Sting1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 72512] {aka 2610307O08Rik, ERIS, MPYS, Mita, STING, STING-beta}, TBK1 (TANK binding kinase 1) [NCBI Gene 29110] {aka AIARV, FTDALS4, IIAE8, NAK, T2K}, Enpp3 (ectonucleotide pyrophosphatase/phosphodiesterase 3) [NCBI Gene 209558] {aka CD203c}
- **Diseases:** Clear cell renal cell carcinoma (MESH:D002292), glioblastoma (MESH:D005909), breast cancer (MESH:D001943), hypersensitivity (MESH:D004342), weight loss (MESH:D015431), toxicities (MESH:D064420), pancreatic and colorectal carcinoma (MESH:D015179), hematologic toxicity (MESH:D006402), kidney cancer (MESH:D007680), acute myeloid leukemia (MESH:D015470), Hypoxia (MESH:D000860), hypoxic (MESH:D002534), TAM (MESH:D020914), oncogenesis (MESH:D063646), Tumors (MESH:D009369), CML (MESH:D015464), inflammatory (MESH:D007249)
- **Chemicals:** PVDF (MESH:C024865), PBS (MESH:D007854), formaldehyde (MESH:D005557), glucose (MESH:D005947), CO2 (MESH:D002245), nucleoside (MESH:D009705), lipid (MESH:D008055), polybrene (MESH:D006583), cGAMP (MESH:C584311), S. (MESH:D013455), P4850 (-), hematoxylin (MESH:D006416), penicillin (MESH:D010406), SDS (MESH:D012967), glycine (MESH:D005998), nitric oxide (MESH:D009569), ethanol (MESH:D000431), TRIzol (MESH:C411644), nucleotide (MESH:D009711), xylene (MESH:D014992), streptomycin (MESH:D013307), PX-478 (MESH:C492908), O2 (MESH:D010100), P (MESH:D010758), anthracyclines (MESH:D018943)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mycoplasma (genus) [taxon 2093], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** shENPP3 — Mus musculus (Mouse), Hybridoma (CVCL_C6V6), 769-P — Homo sapiens (Human), Renal cell carcinoma, Cancer cell line (CVCL_1050), A498 — Homo sapiens (Human), Renal cell carcinoma, Cancer cell line (CVCL_1056), Caki-2 — Homo sapiens (Human), Papillary renal cell carcinoma, Cancer cell line (CVCL_0235), HEK293 — Homo sapiens (Human), Transformed cell line (CVCL_0045), 1D — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_RG58), BALB/c — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0184), RCC4 — Homo sapiens (Human), Clear cell renal cell carcinoma, Cancer cell line (CVCL_0498), RCC4/SNU-333 — Homo sapiens (Human), Clear cell renal cell carcinoma, Cancer cell line (CVCL_5053), 786-O — Homo sapiens (Human), Renal cell carcinoma, Cancer cell line (CVCL_1051), ACHN — Homo sapiens (Human), Papillary renal cell carcinoma, Cancer cell line (CVCL_1067), 293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), HTB-44 — Mus musculus (Mouse), Hybridoma (CVCL_A8FQ), pLKO.1 — Mus musculus (Mouse), Hybridoma (CVCL_C7RB)

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## References

39 references — full list in the complete paper: https://tomesphere.com/paper/PMC12928646/full.md

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Source: https://tomesphere.com/paper/PMC12928646