# Genomic Analysis of Doxycycline Resistance–Associated 16S rRNA Mutations in Treponema pallidum Subspecies pallidum

**Authors:** George S. Long, Mackenzie Neale, Thomas Braukmann, Vanessa Tran, Nishant Singh, Vanessa Allen, Muhammad Morshed, Jessica Minion, Paul Van Caeseele, Maud Vallée, Todd Hatchette, Samir N. Patel, Raymond S.W. Tsang, Venkata R. Duvvuri

PMC · DOI: 10.3201/eid3202.251060 · Emerging Infectious Diseases · 2026-02-01

## TL;DR

This study identifies genomic mutations in Treponema pallidum linked to doxycycline resistance, providing a global baseline for tracking antibiotic resistance in syphilis.

## Contribution

The study provides the first global genomic baseline for doxycycline resistance in Treponema pallidum subspecies pallidum.

## Key findings

- Nine non-Canadian genomes showed variants associated with doxycycline resistance.
- Seventeen new Canadian T. pallidum genomes were analyzed for resistance mutations.
- Findings can help monitor antibiotic resistance in syphilis treatment.

## Abstract

We inspected 16S rRNA sequences of 784 publicly available Treponema pallidum subspecies pallidum genomes and 17 new T. pallidum subsp. pallidum genomes from Canada for putative mutations associated with doxycycline resistance. Variants were detected in 9 non-Canada genomes. These findings establish a global genomic baseline for monitoring doxycycline resistance in syphilis.

## Linked entities

- **Chemicals:** doxycycline (PubChem CID 54671203)
- **Diseases:** syphilis (MONDO:0005976)

## Full-text entities

- **Genes:** ITGA2B (integrin subunit alpha 2b) [NCBI Gene 3674] {aka BDPLT16, BDPLT2, CD41, CD41B, FMAIT2, GP2B}
- **Diseases:** TPA (MESH:C531782), infections (MESH:D007239), syphilis (MESH:D013587), STI (MESH:D012749), AMR (MESH:D060467)
- **Chemicals:** benzathine penicillin G (MESH:D010401), TPA (-), tetracycline (MESH:D013752), penicillin (MESH:D010406), Macrolide (MESH:D018942), Doxycycline (MESH:D004318)
- **Species:** Spirochaeta (genus) [taxon 146], Treponema pallidum (species) [taxon 160], Helicobacter pylori (species) [taxon 210], Treponema pallidum subsp. pallidum (syphilis treponeme, subspecies) [taxon 161], Cutibacterium acnes (species) [taxon 1747], Escherichia coli (E. coli, species) [taxon 562]
- **Mutations:** G1053A, G1032C, A2058G, G966T, A930G, T allele at position 968, A2106G, G931T, G1056A, A1055G, A2059G, C1057T, G1058C, A932C, A965G, A964G, C1054T, A1058G, T967G, A967C

## Full text

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## References

15 references — full list in the complete paper: https://tomesphere.com/paper/PMC12928234/full.md

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Source: https://tomesphere.com/paper/PMC12928234