# Molecular Characterization of Extracellular Vesicles From Human B Cell Lymphomas: Methodological Comparison to Vesicles From Patient Serum

**Authors:** Md Nasir Uddin Badal, Tiia Koivula, Md Khirul Islam, Laura Lehtinen, Otto Kauko, Janne Leivo, Ilkka Heinonen, Saara Hämälistö

PMC · DOI: 10.1002/jex2.70107 · Journal of Extracellular Biology · 2026-02-22

## TL;DR

This study compares extracellular vesicles from human B cell lymphomas and patient serum to identify molecular differences that could serve as non-invasive biomarkers.

## Contribution

The study reveals subtype-specific molecular and physical characteristics of extracellular vesicles in diffuse large B cell lymphoma.

## Key findings

- ABC-type lymphoma extracellular vesicles are smaller and enriched with CD81 and CD9 compared to GCB-type vesicles.
- B cell-specific marker CD19 is detectable in serum extracellular vesicles alongside markers from lymphoma cell line vesicles.
- Intensive sample preparation is required to detect certain markers like Hsp70 or CD44 in serum extracellular vesicles.

## Abstract

Human B cell lymphomas represent a clinically heterogeneous disease group with lack of liquid biomarkers for specific subtype classification. Extracellular vesicles (EVs) hold promises as non‐invasive biomarkers, yet their subtype‐specific characteristics and clinical utility in these diseases remain largely underexplored. In this study, we have investigated the basic molecular and physical features of EVs from diffuse large B cell lymphoma (DLBCL) cells and from lymphoma patients’ serum. Data from e.g., electron microscopy (EM), Western blotting (WB), immunoassay and mass spectrometry (MS) revealed that the two main DLBCL cell subtype EVs differ in protein expression profile and in overall EV size, with the ABC (Activated B Cell) type having smaller EVs than the GCB (Germinal Centre B cell) type. The ABC type EVs were found significantly more enriched with tetraspanins CD81 and CD9. Parallel experimentation on lymphoma serum EVs revealed shared markers with lymphoma cell line EVs, and that B cell specific marker CD19 can be detected among other serum EVs. Also, to successfully detect markers, e.g. Hsp70 or CD44, in serum EVs we demonstrated to require more intense sample preparation in specific assays. While more patient studies are needed in the future, this pilot study paves the way for understanding the molecular differences in the DLBCL subtypes and for detecting them in the lymphoma EVs.

This figure summarises the main steps in this study, including used methodology. The extracellular vesicles were isolated from human B lymphoma subtype cells and serum of patients by SEC and characterized for EV sizes and marker expression e.g. tetraspanin enrichment in the EVs. Key findings demonstrate differences in EV sizes and marker expression in the distinct lymphoma subtype EVs. Created in BioRender. Hämälistö, S. (2026) https://BioRender.com/oduv5ok

## Linked entities

- **Proteins:** CD81 (CD81 molecule), CD9 (CD9 molecule), CD19 (CD19 molecule), HSPA1A (heat shock protein family A (Hsp70) member 1A), CD44 (CD44 molecule (IN blood group))
- **Diseases:** diffuse large B cell lymphoma (MONDO:0018905)

## Full-text entities

- **Genes:** IGHG4 (immunoglobulin heavy constant gamma 4 (G4m marker)) [NCBI Gene 3503], EZH2 (enhancer of zeste 2 polycomb repressive complex 2 subunit) [NCBI Gene 2146] {aka ENX-1, ENX1, EZH2b, KMT6, KMT6A, WVS}, CD81 (CD81 molecule) [NCBI Gene 975] {aka CVID6, S5.7, TAPA1, TSPAN28}, CD44 (CD44 molecule (IN blood group)) [NCBI Gene 960] {aka CDW44, CSPG8, ECM-III, ECMR-III, H-CAM, HCELL}, CD63 (CD63 molecule) [NCBI Gene 967] {aka AD1, HOP-26, ME491, MLA1, OMA81H, Pltgp40}, KRT20 (keratin 20) [NCBI Gene 54474] {aka CD20, CK-20, CK20, K20, KRT21}, CD9 (CD9 molecule) [NCBI Gene 928] {aka BTCC-1, DRAP-27, MIC3, MRP-1, TSPAN-29, TSPAN29}, HSPA4 (heat shock protein family A (Hsp70) member 4) [NCBI Gene 3308] {aka APG-2, HEL-S-5a, HS24/P52, HSPH2, RY, hsp70}, HSP90AA1 (heat shock protein 90 alpha family class A member 1) [NCBI Gene 3320] {aka EL52, HEL-S-65p, HSP86, HSP89A, HSP90A, HSP90N}, CD19 (CD19 molecule) [NCBI Gene 930] {aka B4, CVID3}, IGHG1 (immunoglobulin heavy constant gamma 1 (G1m marker)) [NCBI Gene 3500], NPR2 (natriuretic peptide receptor 2) [NCBI Gene 4882] {aka AMDM, ANPRB, ANPb, ECDM, GC-B, GCB}, MYD88 (MYD88 innate immune signal transduction adaptor) [NCBI Gene 4615] {aka IMD68, MYD88D, WM1}, CD79B (CD79b molecule) [NCBI Gene 974] {aka AGM6, B29, IGB, Igbeta}, ABCB6 (ATP binding cassette subfamily B member 6 (LAN blood group)) [NCBI Gene 10058] {aka ABC, LAN, MTABC3, PRP, umat}, ALB (albumin) [NCBI Gene 213] {aka FDAHT, HSA, PRO0883, PRO0903, PRO1341}, HSP90B1 (heat shock protein 90 beta family member 1) [NCBI Gene 7184] {aka ECGP, GP96, GRP94, HEL-S-125m, HEL35, TRA1}, EZR (ezrin) [NCBI Gene 7430] {aka CVIL, CVL, HEL-S-105, VIL2}, NOTCH2 (notch receptor 2) [NCBI Gene 4853] {aka AGS2, HJCYS, hN2}, LGALS3BP (galectin 3 binding protein) [NCBI Gene 3959] {aka 90K, BTBD17B, CyCAP, M2BP, MAC-2-BP, TANGO10B}, PDCD6IP (programmed cell death 6 interacting protein) [NCBI Gene 10015] {aka AIP1, ALIX, DRIP4, HP95, MCPH29}, APOA1 (apolipoprotein A1) [NCBI Gene 335] {aka AMYLD3, HPALP2, apo(a)}, IGHG2 (immunoglobulin heavy constant gamma 2 (G2m marker)) [NCBI Gene 3501], BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596] {aka Bcl-2, PPP1R50}, GNA13 (G protein subunit alpha 13) [NCBI Gene 10672] {aka G13, HG1N}, SDCBP (syndecan binding protein) [NCBI Gene 6386] {aka MDA-9, MDA9, SDCBP1, ST1, SYCL, TACIP18}, BCL6 (BCL6 transcription repressor) [NCBI Gene 604] {aka BCL5, BCL6A, LAZ3, ZBTB27, ZNF51}
- **Diseases:** hematologic malignancies (MESH:D019337), cancer (MESH:D009369), Prostate cancer (MESH:D011471), Hodgkin or small lymphocytic lymphoma (MESH:D015451), DLBCL (MESH:D016403), B Cell Lymphomas (MESH:D016393), MCD (MESH:C567200), lymphoma (MESH:D008223), non-Hodgkin lymphomas (MESH:D008228)
- **Chemicals:** Cu (MESH:D003300), DTT (MESH:D004229), Biotin (MESH:D001710), water (MESH:D014867), Ponceau S (MESH:C032756), IAA (MESH:D007460), Peptides (MESH:D010455), EDTA (MESH:D004492), NP-40 (MESH:C010615), polyacrylamide (MESH:C016679), Carbon (MESH:D002244), streptomycin (MESH:D013307), Triton X-100 (MESH:D017830), acetonitrile (MESH:C032159), NaCl (MESH:D012965), gold (MESH:D006046), formic acid (MESH:C030544), a (MESH:D001151), glutaraldehyde (MESH:D005976), DAPI (MESH:C007293), polystyrene (MESH:D011137), CO2 (MESH:D002245), lipid (MESH:D008055), PFA (MESH:C003043), urea (MESH:D014508), Alexa Fluor 488 (MESH:C000711379), acetone (MESH:D000096), TFA (MESH:D014269), ammonium bicarbonate (MESH:C027043), uranyl acetate (MESH:C005460), BMe (-), disulfide (MESH:D004220), penicillin (MESH:D010406), Europium (MESH:D005063)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** A2720802P
- **Cell lines:** DU145 — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_0105), S-4 and O-7 — Mus musculus (Mouse), Hybridoma (CVCL_Z932), PMX-120 — Homo sapiens (Human), Finite cell line (CVCL_4J08), Ri — Homo sapiens (Human), Diffuse large B-cell lymphoma activated B-cell type, Cancer cell line (CVCL_1885), U-2 — Homo sapiens (Human), Fibrosarcoma, Cancer cell line (CVCL_M019), O-7 — Homo sapiens (Human), Childhood acute megakaryoblastic leukemia, Cancer cell line (CVCL_D630), S-4 — Homo sapiens (Human), Gastric carcinoma, Cancer cell line (CVCL_RX85)

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12927977/full.md

## References

43 references — full list in the complete paper: https://tomesphere.com/paper/PMC12927977/full.md

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Source: https://tomesphere.com/paper/PMC12927977