# The Lipid Interactome: an interactive and open access platform for exploring cellular lipid–protein interactions

**Authors:** Gaelen Guzman, André Nadler, Frank Stein, Jeremy M Baskin, Carsten Schultz, Fikadu G Tafesse

PMC · DOI: 10.1093/bioinformatics/btaf651 · Bioinformatics · 2026-02-18

## TL;DR

The Lipid Interactome is a new open-access platform that helps researchers explore and compare how lipids interact with proteins in cells.

## Contribution

It introduces a centralized, FAIR-compliant database and interactive portal for lipid–protein interaction data.

## Key findings

- The platform consolidates and standardizes lipid interactome data from multiple studies.
- It enables systematic exploration and cross-study comparisons of lipid-binding proteins.
- All data are freely downloadable with no user tracking or login requirements.

## Abstract

Lipid–protein interactions play essential roles in cellular signaling and membrane dynamics, yet their systematic characterization has long been hindered by the inherent biochemical properties of lipids. Recent advances in functionalized lipid probes—equipped with photoactivatable crosslinkers, affinity handles, and photocleavable protecting groups—have enabled proteomics-based identification of lipid interacting proteins with unprecedented specificity and resolution. Despite the growing number of published lipid interactomes, there remains no centralized effort to harmonize, compare, or integrate these datasets. The Lipid Interactome addresses this gap by providing a structured, interactive web portal that adheres to FAIR data principles—ensuring that lipid interactome studies are Findable, Accessible, Interoperable, and Reusable. Through standardized data formatting, interactive visualizations, and direct cross-study comparisons, this resource enables researchers to systematically explore the protein-binding partners of diverse bioactive lipids. By consolidating and curating lipid interactome proteomics data from multiple studies, the Lipid Interactome database serves as a critical tool for deciphering the biological functions of lipids in cellularsystems.

This site can be viewed at LipidInteractome.org. All data are available for download. No user information is collected or necessary for data navigation, interaction, or download.

## Full-text entities

- **Genes:** REG1A (regenerating family member 1 alpha) [NCBI Gene 5967] {aka ICRF, P19, PSP, PSPS, PSPS1, PTP}
- **Diseases:** Infection (MESH:D007239), Infectious Diseases (MESH:D003141)
- **Chemicals:** amino acids (MESH:D000596), phosphatidic acid (MESH:D010712), sphinganine (MESH:C005682), fatty acid (MESH:D005227), phosphatidyl alcohol (-), phosphatidylethanolamine (MESH:C483858), diacylglycerol (MESH:D004075), alkyne (MESH:D000480), sphingosine (MESH:D013110), N-acylphosphatidylethanolamine (MESH:C000609813), diazirine (MESH:D003978), Lipid (MESH:D008055), coumarin (MESH:C030123)
- **Cell lines:** Huh7 — Homo sapiens (Human), Adult hepatocellular carcinoma, Cancer cell line (CVCL_0336), HeLa — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030)

## Full text

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## References

22 references — full list in the complete paper: https://tomesphere.com/paper/PMC12926778/full.md

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Source: https://tomesphere.com/paper/PMC12926778