# Innovative approaches targeting innate immune cells to promote organ transplant tolerance

**Authors:** Chiyoshi Toyama, Angus W. Thomson

PMC · DOI: 10.3389/frtra.2026.1776806 · Frontiers in Transplantation · 2026-02-09

## TL;DR

This paper explores new methods to target innate immune cells to improve organ transplant tolerance without harming overall immunity.

## Contribution

The paper introduces novel strategies to modulate innate immune cells for transplant tolerance using precision therapies and gene editing.

## Key findings

- Innate immune cells play a key role in allograft rejection and tolerance.
- Precision therapies targeting myeloid inhibitory checkpoints and metabolic reprogramming show promise.
- CRISPR/Cas9 gene editing and adoptive transfer of regulatory myeloid cells are emerging approaches.

## Abstract

Achieving long-term allograft survival while minimizing systemic immunosuppression (IS) remains a critical unmet need in transplantation. While adaptive immunity has traditionally been the primary focus of IS therapy, innate immune cells—that include neutrophils, monocytes, macrophages, dendritic cells, myeloid-derived suppressor cells, innate lymphoid cells (ILCs), natural killer (NK) cells, and gamma delta (γδ) T cells act as key upstream orchestrators of allograft rejection and tolerance. Recent advances in single-cell RNA sequencing and spatial transcriptomics have unveiled the profound heterogeneity of these cell populations, identifying distinct regulatory subsets and novel inhibitory checkpoints. These high-resolution insights provide the scientific rationale for developing innovative precision therapies that can selectively modulate innate immune reactivity without compromising global immunity. Here, we review innovative strategies to target/amplify these mechanisms, including targeting the myeloid inhibitory checkpoints (e.g., leukocyte immunoglobulin-like receptor B; sialic acid-binding immunoglobulin-like lectin-E) to induce tolerogenic phenotypes. We further discuss the modulation of metabolic reprogramming to prevent “trained immunity” using mammalian target of rapamycin inhibitor (mTORi)-loaded nanoparticles, and the use of CRISPR (clustered regularly interspaced short palindromic repeats)/Cas9 gene editing to silence T cell costimulatory signals. We evaluate the adoptive transfer of regulatory myeloid cells, -specifically donor-derived regulatory macrophages and regulatory dendritic cells, and innate lymphoid cells in transplant recipients. Furthermore, the potential of targeting specific NK cell and ILC subsets associated with graft regulation is addressed. Collectively, these emerging approaches aim to reprogram the allograft microenvironment, offering a promising paradigm shift towards establishing transplant tolerance.

## Linked entities

- **Chemicals:** doxorubicin (PubChem CID 31703)

## Full-text entities

- **Genes:** Cd47 (CD47 antigen (Rh-related antigen, integrin-associated signal transducer)) [NCBI Gene 16423] {aka 9130415E20Rik, B430305P08Rik, IAP, Itgp}, Dcn (decorin) [NCBI Gene 13179] {aka DC, DSPG2, PG40, PGII, PGS2, SLRR1B}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, Cd209a (CD209a antigen) [NCBI Gene 170786] {aka CD209, CDSIGN, CIRE, DC-SIGN, DC-SIGN1, Dcsign}, Tlr4 (toll-like receptor 4) [NCBI Gene 29260], Tgfb1 (transforming growth factor, beta 1) [NCBI Gene 21803] {aka TGF-beta1, TGFbeta1, Tgfb, Tgfb-1}, CD86 (CD86 molecule) [NCBI Gene 942] {aka B7-2, B7.2, B70, BU63, CD28LG2, CD86 v6}, CXCL10 (C-X-C motif chemokine ligand 10) [NCBI Gene 3627] {aka C7, IFI10, INP10, IP-10, SCYB10, crg-2}, MREG (melanoregulin) [NCBI Gene 55686] {aka DSU, WDT2}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, CSF1 (colony stimulating factor 1) [NCBI Gene 1435] {aka CSF-1, MCSF, PG-M-CSF}, TBX21 (T-box transcription factor 21) [NCBI Gene 30009] {aka IMD88, T-PET, T-bet, TBET, TBLYM}, Il10 (interleukin 10) [NCBI Gene 16153] {aka CSIF, If2a, Il-10}, FCGR3A (Fc gamma receptor IIIa) [NCBI Gene 2214] {aka CD16-II, CD16A, FCG3, FCGR3, FCRIIIA, FcGRIIIA}, Klrk1 (killer cell lectin-like receptor subfamily K, member 1) [NCBI Gene 27007] {aka D6H12S2489E, NKG2-D, Nkg2d}, Il4 (interleukin 4) [NCBI Gene 16189] {aka BSF-1, Il-4}, Csf1 (colony stimulating factor 1 (macrophage)) [NCBI Gene 12977] {aka BAP025, Csfm, MCSF, Mhdabap25, PG-M-CSF, op}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, TIGIT (T cell immunoreceptor with Ig and ITIM domains) [NCBI Gene 201633] {aka VSIG9, VSTM3, WUCAM}, Il33 (interleukin 33) [NCBI Gene 77125] {aka 9230117N10Rik, Il-33, Il1f11, NF-HEV}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, Fcgr3 (Fc receptor, IgG, low affinity III) [NCBI Gene 14131] {aka CD16}, Notch1 (notch 1) [NCBI Gene 18128] {aka 9930111A19Rik, Mis6, N1, Tan1, lin-12}, CD47 (CD47 molecule) [NCBI Gene 961] {aka IAP, MER6, OA3}, Foxp3 (forkhead box P3) [NCBI Gene 20371] {aka JM2, scurfin, sf}, Il9 (interleukin 9) [NCBI Gene 16198] {aka Il-9, P40}, Cd40 (CD40 antigen) [NCBI Gene 21939] {aka Bp50, GP39, HIGM1, IGM, IMD3, T-BAM}, Hmgb1 (high mobility group box 1) [NCBI Gene 15289] {aka HMG-1, Hmg1, SBP-1, p30}, SIRPA (signal regulatory protein alpha) [NCBI Gene 140885] {aka BIT, CD172A, MFR, MYD-1, MYD1, P84}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, Il2 (interleukin 2) [NCBI Gene 16183] {aka Il-2}, KIR3DL2 (killer cell immunoglobulin like receptor, three Ig domains and long cytoplasmic tail 2) [NCBI Gene 3812] {aka 3DL2, CD158K, KIR-3DL2, NKAT-4, NKAT4, NKAT4B}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, Il5 (interleukin 5) [NCBI Gene 16191] {aka Il-5}, Gata3 (GATA binding protein 3) [NCBI Gene 14462] {aka Gata-3, jal}, Mreg (melanoregulin) [NCBI Gene 381269] {aka Gm974, Wdt2, dsu}, Il17a (interleukin 17A) [NCBI Gene 16171] {aka Ctla-8, Ctla8, IL-17, IL-17A, Il17}, THBD (thrombomodulin) [NCBI Gene 7056] {aka AHUS6, BDCA-3, BDCA3, CD141, THPH12, THRM}, Cd38 (CD38 antigen) [NCBI Gene 12494] {aka ADPRC 1, Cd38-rs1, I-19}, EOMES (eomesodermin) [NCBI Gene 8320] {aka TBR2}, GATA3 (GATA binding protein 3) [NCBI Gene 2625] {aka HDR, HDRS}, Nfkb1 (nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105) [NCBI Gene 18033] {aka NF-KB1, NF-kappaB, NF-kappaB1, p105, p50, p50/p105}, C5ar1 (complement component 5a receptor 1) [NCBI Gene 12273] {aka C5aR, C5r1, Cd88, D7Msu1}, Il13 (interleukin 13) [NCBI Gene 16163] {aka Il-13}, CD163 (CD163 molecule) [NCBI Gene 9332] {aka M130, MM130, SCARI1}, Mtor (mechanistic target of rapamycin kinase) [NCBI Gene 56717] {aka 2610315D21Rik, FRAP, FRAP2, Frap1, RAFT1, RAPT1}, Hc (hemolytic complement) [NCBI Gene 15139] {aka C5, C5a, He, Hfib2}, Pirb (paired Ig-like receptor B) [NCBI Gene 18733] {aka Gp91, LIR-3, Lilrb3, PIR-B}, Hmgb1 (high mobility group box 1) [NCBI Gene 25459] {aka Ac2-008, Hmg1}, Siglece (sialic acid binding Ig-like lectin E) [NCBI Gene 83382] {aka Cd170, Siglec12, Siglec5, Siglec9, Siglecl1, mSiglec-E}, Tlr4 (toll-like receptor 4) [NCBI Gene 21898] {aka Lps, Ly87, Ran/M1, Rasl2-8}, CD80 (CD80 molecule) [NCBI Gene 941] {aka B7, B7-1, B7.1, BB1, CD28LG, CD28LG1}, Cd14 (CD14 antigen) [NCBI Gene 12475], Ifng (interferon gamma) [NCBI Gene 15978] {aka IFN-g, If2f, Ifg}, ARG1 (arginase 1) [NCBI Gene 383], ICAM3 (intercellular adhesion molecule 3) [NCBI Gene 3385] {aka CD50, CDW50, ICAM-R}, SIGLEC7 (sialic acid binding Ig like lectin 7) [NCBI Gene 27036] {aka AIRM-1, AIRM1, CD328, CDw328, D-siglec, QA79}, Cd4 (CD4 antigen) [NCBI Gene 12504] {aka L3T4, Ly-4}, Il6 (interleukin 6) [NCBI Gene 16193] {aka Il-6}, SIGLEC9 (sialic acid binding Ig like lectin 9) [NCBI Gene 27180] {aka CD329, CDw329, FOAP-9, OBBP-LIKE, siglec-9}
- **Diseases:** neutrophil (MESH:C564275), reperfusion injury (MESH:D015427), MDSCs (OMIM:601308), ischemic injury (MESH:D017202), heart tx (MESH:D006331), type 3 ILC (MESH:C536044), kidney graft injury (MESH:D007674), M-MDSC (MESH:C566367), acute and chronic inflammation (MESH:D007249), graft-vs. host disease (MESH:D006086), NOD (MESH:D020191), immune-mediated disorders (MESH:C567355), NET (MESH:C536657), SCID (MESH:D053632), ischemia (MESH:D007511)
- **Chemicals:** tacrolimus (MESH:D016559), ddMreg (-), vitamin D3 (MESH:D002762), reactive oxygen species (MESH:D017382), sialic acid (MESH:D019158), salidroside (MESH:C009172), lactate (MESH:D019344), nitric oxide (MESH:D009569)
- **Species:** Homo sapiens (human, species) [taxon 9606], Rodentia (rodent, order) [taxon 9989], Rattus norvegicus (brown rat, species) [taxon 10116], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** ILT2 — Homo sapiens (Human), Transformed cell line (CVCL_F909)

## Full text

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## Figures

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## References

111 references — full list in the complete paper: https://tomesphere.com/paper/PMC12926429/full.md

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Source: https://tomesphere.com/paper/PMC12926429