# Dynamics and function of the GET system microbial community: insights into the role of the genus Bacillus in biogas production

**Authors:** Shaohua Chen, Hirotatsu Murano, Mio Matsushita, Sadanari Jindo, Tatsuya Hirano, Hiroto Tamura

PMC · DOI: 10.3389/fmicb.2026.1729398 · Frontiers in Microbiology · 2026-02-09

## TL;DR

A new system called GET produces biogas from rice straw, and a specific type of Bacillus bacteria plays a key role in this process.

## Contribution

This study reveals the functional role of B. fumarioli in efficient methane production under anaerobic conditions.

## Key findings

- The GET system produces significant biogas from rice straw with a second addition boosting production.
- Bacillus fumarioli increases in abundance after the second rice straw addition and correlates with higher biogas production.
- B. fumarioli likely decomposes rice straw into acetate, which supports methane production by Methanosaeta.

## Abstract

To contribute to a sustainable society, we have established a novel technology for self-sufficient, renewable energy production called the GET system. This system produces approximately 300 liters of biogas from 1 kilogram of untreated rice straw in rice paddy fields while simultaneously reducing methane emissions from those paddies. A key feature of the GET system is that 2nd addition of rice straw, made 2 months later, significantly increased biogas production compared to the initial addition. However, no volatile fatty acids (VFAs)—key substrates for methanogens—were detected after 2nd addition of rice straw.

To understand this phenomenon, the microbial community in the GET system at various time points was analyzed using next-generation sequencing (NGS) and real-time quantitative PCR (RT-PCR).

Volatile fatty acids (VFAs), particularly acetic acid, are important substrates and indicators for methane production. However, in this study, VFAs, including acetate, were not detected after 2nd addition of rice straw, which significantly increased biogas production. In the analysis of microbial community structure, although bacteria from Clostridium and methanogenic archaea are often considered to play a dominant role in anaerobic cellulolytic fermentation and methanogenesis, respectively, the GET system was dominated by Bacillus, which had an average abundance of 23.8%. This abundance increased fourfold after 2nd addition of rice straw, mainly due to the increased presence of B. fumarioli under strict anaerobic condition, which has been recently transferred into the genus Neobacillus (Patel and Gupta, 2020). However, the average abundance of Methanosaeta and Clostridium accounted for 3.7 and 7.1% of the total, respectively, with no significant changes in abundance throughout the experimental period.

The synchronization of the increase in B. fumarioli abundance with the increase in biogas production in the GET system indicated that B. fumarioli plays a key role in maintaining a perfect balance with the methanogenic archaea Methanosaeta by decomposing rice straw, subsequently producing VFA, and ultimately generating acetate, which serves as a substrate for methane production.

This study provides the first functional insight into the role of B. fumarioli in efficient methane production under strictly anaerobic conditions.

## Linked entities

- **Chemicals:** acetic acid (PubChem CID 176), acetate (PubChem CID 175), methane (PubChem CID 297)
- **Species:** Bacillus (taxon 1386), Neobacillus (taxon 2675232), Clostridium (taxon 1485)

## Full-text entities

- **Chemicals:** urea (MESH:D014508), methyl-coenzyme M (MESH:C023349), formamide (MESH:C031066), biomethane (-), VFA (MESH:D005232), glucose (MESH:D005947), butanol (MESH:D000440), alcohol (MESH:D000438), H (MESH:D006859), Acetate (MESH:D000085), W (MESH:D014414), agarose (MESH:D012685), chloroform (MESH:D002725), DES (MESH:D004054), CO2 (MESH:D002245), butyric acid (MESH:D020148), ATP (MESH:D000255), carbon (MESH:D002244), Bis-Tris (MESH:C026272), polyacrylamide (MESH:C016679), monosaccharides (MESH:D009005), Methane (MESH:D008697), EDTA (MESH:D004492), lactic acid (MESH:D019344), oxygen (MESH:D010100), PTFE (MESH:D011138), nitrate (MESH:D009566), formic acid (MESH:C030544), pyruvic acid (MESH:D019289), succinic acid (MESH:D019802), ethanol (MESH:D000431), isovaleric acid (MESH:C008216), glyoxylic acid (MESH:C031150), acetic acid (MESH:D019342), propionic acid (MESH:C029658), acetyl-CoA (MESH:D000105), GHG (MESH:D000074382), water (MESH:D014867)
- **Species:** Clostridium saccharobutylicum (species) [taxon 169679], Clostridium (genus) [taxon 1485], Bacillus (genus) [taxon 55087], Methanothrix (genus) [taxon 2222], Oryza sativa (Asian cultivated rice, species) [taxon 4530], Bacillota (clostridial firmicutes, phylum) [taxon 1239], Bacillus cereus (species) [taxon 1396], Bacillus subtilis (species) [taxon 1423], Clostridia (class) [taxon 186801], Neobacillus fumarioli (species) [taxon 105229], Clostridium butyricum (species) [taxon 1492], Priestia flexa (species) [taxon 86664]

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12926373/full.md

## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12926373/full.md

## References

26 references — full list in the complete paper: https://tomesphere.com/paper/PMC12926373/full.md

---
Source: https://tomesphere.com/paper/PMC12926373