# Reprogramming brain-resident macrophages: from disease drivers to therapeutic allies in neurological disorders

**Authors:** Peng Zhao, Su-Yi Li, Qun Liu, Xiao-Chun Peng, Lian Liu, Fu-Yuan Yang, Chao Wang, Feng Qian, Feng-Ru Tang

PMC · DOI: 10.3389/fncel.2026.1726194 · Frontiers in Cellular Neuroscience · 2026-02-09

## TL;DR

This paper explores how brain-resident macrophages can be reprogrammed to shift from causing neurological diseases to aiding in their treatment.

## Contribution

The paper introduces emerging therapeutic strategies to reprogram brain-resident macrophages for treating neurological disorders.

## Key findings

- Brain-resident macrophages can both protect neurons and drive neurodegeneration depending on their activation state.
- TREM2 and ADGRG1 signaling in microglia help clear Aβ plaques in Alzheimer’s disease.
- Therapeutic approaches like TREM2 agonists and NLRP3 inhibitors are being developed to modulate macrophage function.

## Abstract

Brain-resident macrophages (BRMs), including microglia and border-associated macrophages (BAMs), are the core immune sentinels of the central nervous system (CNS). They originate from early embryonic yolk sac and fetal liver progenitors and maintain their population throughout life via self-renewal. During neurodevelopment, microglia maintain neural network homeostasis by phagocytosing apoptotic neural precursors and pruning synaptic connections. In adulthood, they rapidly respond to infection, injury, or protein aggregation, which can both promote repair and exacerbate neurotoxicity. BAMs, located in the meninges, perivascular spaces, and choroid plexus, play a key role in boundary homeostasis and peripheral immune signal surveillance. Recent studies reveal that BRMs exhibit dual roles in Alzheimer’s disease (AD), Parkinson’s disease (PD), Huntington’s disease (HD), multiple sclerosis (MS), as well as ischemic stroke, traumatic brain injury, and radiation-induced brain injury: they can protect neurons by clearing pathological proteins or cellular debris, but persistent inflammatory responses may drive neurodegeneration. In AD, microglia clear Aβ plaques via triggering receptor expressed on myeloid cells 2 (TREM2) and ADGRG1 signaling, while BAMs regulate synaptic damage and cerebrovascular function through CD36-ROS and SPP1 pathways. In PD and HD, BRMs contribute to α-synuclein- and mutant huntingtin-related inflammatory responses. In MS, BRMs modulate the pro−/anti-inflammatory balance through antigen presentation and cytokine signaling. Based on these mechanisms, therapeutic strategies targeting BRM functions are emerging, including NLRP3 inflammasome inhibitors, TREM2 agonists, and interventions promoting microglial neuroprotective phenotypes. Future approaches aiming to precisely modulate BRM plasticity and their interactions with the peripheral immune system may transform these immune sentinels from “disease drivers” to “therapeutic allies,” offering novel strategies for treating neurodegenerative diseases and brain injuries.

## Linked entities

- **Genes:** TREM2 (triggering receptor expressed on myeloid cells 2) [NCBI Gene 54209], ADGRG1 (adhesion G protein-coupled receptor G1) [NCBI Gene 9289], CD36 (CD36 molecule (CD36 blood group)) [NCBI Gene 948], SPP1 (secreted phosphoprotein 1) [NCBI Gene 6696], NLRP3 (NLR family pyrin domain containing 3) [NCBI Gene 114548]
- **Proteins:** ab (abrupt)
- **Diseases:** Alzheimer’s disease (MONDO:0004975), Parkinson’s disease (MONDO:0005180), Huntington’s disease (MONDO:0007739), multiple sclerosis (MONDO:0005301), ischemic stroke (MONDO:1060198), traumatic brain injury (MONDO:0858950)

## Full-text entities

- **Genes:** GRN (granulin precursor) [NCBI Gene 2896] {aka CLN11, FTD2, GEP, GP88, PCDGF, PEPI}, IL12B (interleukin 12B) [NCBI Gene 3593] {aka CLMF, CLMF2, IL-12B, IMD28, IMD29, NKSF}, APOE (apolipoprotein E) [NCBI Gene 348] {aka AD2, APO-E, ApoE4, LDLCQ5, LPG}, CASP3 (caspase 3) [NCBI Gene 836] {aka CPP32, CPP32B, SCA-1}, ARG1 (arginase 1) [NCBI Gene 383], App (amyloid beta precursor protein) [NCBI Gene 11820] {aka Abeta, Abpp, Adap, Ag, Cvap, E030013M08Rik}, LGALS3 (galectin 3) [NCBI Gene 3958] {aka CBP35, GAL3, GALBP, GALIG, L31, LGALS2}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, CD68 (CD68 molecule) [NCBI Gene 968] {aka GP110, LAMP4, SCARD1}, CXADRP1 (CXADR pseudogene 1) [NCBI Gene 653108] {aka CAR, CXADRP}, MIR155 (microRNA 155) [NCBI Gene 406947] {aka MIRN155, miRNA155, mir-155}, IDO1 (indoleamine 2,3-dioxygenase 1) [NCBI Gene 3620] {aka IDO, IDO-1, INDO}, SNCA (synuclein alpha) [NCBI Gene 6622] {aka NACP, PARK1, PARK4, PD1}, YBX1 (Y-box binding protein 1) [NCBI Gene 4904] {aka BP-8, CBF-A, CSDA2, CSDB, DBPB, EFI-A}, BDNF (brain derived neurotrophic factor) [NCBI Gene 627] {aka ANON2, BULN2}, CNR2 (cannabinoid receptor 2) [NCBI Gene 1269] {aka CB-2, CB2, CX5}, Ace (angiotensin I converting enzyme) [NCBI Gene 11421] {aka CD143}, trem2 (triggering receptor expressed on myeloid cells 2) [NCBI Gene 101883794], NR3C1 (nuclear receptor subfamily 3 group C member 1) [NCBI Gene 2908] {aka GCCR, GCR, GCRST, GR, GRL}, MAPT (microtubule associated protein tau) [NCBI Gene 4137] {aka DDPAC, FTD1, FTDP-17, MAPTL, MSTD, MTBT1}, LRP1 (LDL receptor related protein 1) [NCBI Gene 4035] {aka A2MR, APOER, APR, CD91, DDH3, IGFBP-3R}, STING1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 340061] {aka ERIS, MITA, MPYS, NET23, SAVI, STING}, CCL3 (C-C motif chemokine ligand 3) [NCBI Gene 6348] {aka G0S19-1, LD78, LD78ALPHA, MIP-1-alpha, MIP1A, SCI}, IL16 (interleukin 16) [NCBI Gene 3603] {aka LCF, NIL16, PRIL16, prIL-16}, IL18 (interleukin 18) [NCBI Gene 3606] {aka IGIF, IL-18, IL-1g, IL1F4}, NOS2 (nitric oxide synthase 2) [NCBI Gene 4843] {aka HEP-NOS, INOS, NOS, NOS2A}, VEGFA (vascular endothelial growth factor A) [NCBI Gene 7422] {aka L-VEGF, MVCD1, VEGF, VPF}, SIRT1 (sirtuin 1) [NCBI Gene 23411] {aka SIR2, SIR2L1, SIR2alpha}, SMARCA2 (SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2) [NCBI Gene 6595] {aka BAF190, BIS, BRM, NCBRS, SAMRCA2, SNF2}, CCL8 (C-C motif chemokine ligand 8) [NCBI Gene 6355] {aka HC14, MCP-2, MCP2, SCYA10, SCYA8}, CYBB (cytochrome b-245 beta chain) [NCBI Gene 1536] {aka AMCBX2, CGD, CGDX, GP91-1, GP91-PHOX, GP91PHOX}, TLR4 (toll like receptor 4) [NCBI Gene 7099] {aka ARMD10, CD284, TLR-4, TOLL}, IL1A (interleukin 1 alpha) [NCBI Gene 3552] {aka IL-1 alpha, IL-1A, IL1, IL1-ALPHA, IL1F1}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, TLR2 (toll like receptor 2) [NCBI Gene 7097] {aka CD282, TIL4}, STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, NOX4 (NADPH oxidase 4) [NCBI Gene 50507] {aka KOX, KOX-1, RENOX}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, PTPRC (protein tyrosine phosphatase receptor type C) [NCBI Gene 5788] {aka B220, CD45, CD45R, GP180, IMD105, L-CA}, TAS2R62P (taste 2 receptor member 62, pseudogene) [NCBI Gene 338399] {aka PS1, T2R62, TAS2R62}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, Il1b (interleukin 1 beta) [NCBI Gene 16176] {aka IL-1beta, Il-1b}, APP (amyloid beta precursor protein) [NCBI Gene 351] {aka AAA, ABETA, ABPP, AD1, APPI, CTFgamma}, kcnk13b (potassium channel, subfamily K, member 13b) [NCBI Gene 556073] {aka K2P13.1b, kcnk13, si:ch211-173b9.3}, HLA-C (major histocompatibility complex, class I, C) [NCBI Gene 3107] {aka D6S204, HLA-JY3, HLAC, HLC-C, MHC, PSORS1}, SOCS1 (suppressor of cytokine signaling 1) [NCBI Gene 8651] {aka AISIMD, CIS1, CISH1, JAB, SOCS-1, SSI-1}, CCL2 (C-C motif chemokine ligand 2) [NCBI Gene 6347] {aka GDCF-2, HC11, HSMCR30, MCAF, MCP-1, MCP1}, CD163 (CD163 molecule) [NCBI Gene 9332] {aka M130, MM130, SCARI1}, AHR (aryl hydrocarbon receptor) [NCBI Gene 196] {aka FVH3, RP85, bHLHe76}, CTSD (cathepsin D) [NCBI Gene 1509] {aka CLN10, CPSD, HEL-S-130P}, SPP1 (secreted phosphoprotein 1) [NCBI Gene 6696] {aka BNSP, BSPI, ETA-1, OPN}, C1QA (complement C1q A chain) [NCBI Gene 712] {aka C1QD1}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, TBK1 (TANK binding kinase 1) [NCBI Gene 29110] {aka AIARV, FTDALS4, IIAE8, NAK, T2K}, IGF1 (insulin like growth factor 1) [NCBI Gene 3479] {aka IGF, IGF-I, IGFI, MGF}, STAT6 (signal transducer and activator of transcription 6) [NCBI Gene 6778] {aka D12S1644, HIES6, IL-4-STAT, STAT6B, STAT6C}, TYROBP (transmembrane immune signaling adaptor TYROBP) [NCBI Gene 7305] {aka DAP12, KARAP, PLOSL, PLOSL1}, ATN1 (atrophin 1) [NCBI Gene 1822] {aka B37, CHEDDA, D12S755E, DRPLA, HRS, NOD}, LYVE1 (lymphatic vessel endothelial hyaluronan receptor 1) [NCBI Gene 10894] {aka CRSBP-1, HAR, LYVE-1, XLKD1}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}
- **Diseases:** neurological disease (MESH:D020271), brain edema (MESH:D001929), CAA (MESH:D016657), neuronal and oligodendrocyte damage (MESH:D056784), Post-stroke (MESH:D020521), neurobehavioral disorders (MESH:D019954), MSA (MESH:D019578), Ischemia (MESH:D007511), Neurological disorders (MESH:D009461), axonal loss (MESH:D012183), NFTs (MESH:D055956), autonomic dysfunction (MESH:D001342), loss (MESH:D016388), PPMS (MESH:D020528), autoimmune-mediated neurodegenerative disease (MESH:D019636), inflammatory demyelination (MESH:D020277), CNS inflammation (MESH:D007249), PD (MESH:D010300), CSF dysregulation (MESH:D002559), HD (MESH:D006816), ischemic (MESH:D002545), cancer (MESH:D009369), AD (MESH:D000544), MCI (MESH:D060825), neural damage (MESH:D015441), hyperhidrosis (MESH:D006945), neurotoxic (MESH:D020258), Lewy bodies (MESH:D020961), CNS diseases (MESH:D002493), meningitis (MESH:D008580), neuroinflammation (MESH:D000090862), anxiety (MESH:D001007), TBI (MESH:D000070642), infarction (MESH:D007238), neuropathic pain (MESH:D009437), depression (MESH:D003866), EAE (MESH:D004681), axonal degeneration (MESH:D009410), dementia (MESH:D003704), amyloid (MESH:C000718787), BAM dysfunction (MESH:D006331), cortical damage (MESH:D054220), DAM (MESH:D005598), peroxisome (MESH:D018901), rigidity (MESH:D009127), synaptic dysfunction (MESH:C536122), hydrocephalus (MESH:D006849), MS (MESH:D009103), chronic (MESH:D002908), brain tumors (MESH:D001932), RIBI (MESH:D011832), dopaminergic (MESH:D009422), cognitive decline (MESH:D003072), glioblastoma (MESH:D005909), amyloid plaques (MESH:D058225), amyotrophic lateral sclerosis (MESH:D000690), anemia (MESH:D000740), bradykinesia (MESH:D018476), resting tremor (MESH:D014202), ischemic and hemorrhagic stroke (MESH:D002543)
- **Chemicals:** ofatumumab (MESH:C527517), iron (MESH:D007501), KYN (MESH:D007737), M1 (MESH:C400939), oligonucleotides (MESH:D009841), Desloratadine (MESH:C121345), MCC950 (MESH:C000597426), Dapansutrile (MESH:C000627877), 3-hydroxykynurenine (MESH:C005045), NO (MESH:D009569), vitamin D (MESH:D014807), GA (MESH:D000068717), NO2 (MESH:D009585), AZD3241 (MESH:C000602652), endocannabinoid (MESH:D063388), LPS (MESH:D008070), lipid (MESH:D008055), tryptophan (MESH:D014364), SR144528 (MESH:C110630), calcium (MESH:D002118), ROS (MESH:D017382), bisphosphonate (MESH:D004164), ublituximab (MESH:C000619007), ocrelizumab (MESH:C533411), BAMs (-), heroin (MESH:D003932), Siponimod (MESH:C578989), vitamin D3 (MESH:D002762), 4-PBA (MESH:C075773), N, N'-diacetyl-p-phenylenediamine (MESH:C000706930), dexamethasone (MESH:D003907), cGAMP (MESH:C584311), 1-MT (MESH:C525396), AZD1480 (MESH:C545606)
- **Species:** Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049], Mus musculus (house mouse, species) [taxon 10090], Danio rerio (leopard danio, species) [taxon 7955], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** Abeta42-43 — Mus musculus (Mouse), Hybridoma (CVCL_7235), N9 — Mus musculus (Mouse), Transformed cell line (CVCL_0452), R6/1 — Rattus norvegicus (Rat), Transformed cell line (CVCL_D507), C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU)

## Full text

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## Figures

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## References

259 references — full list in the complete paper: https://tomesphere.com/paper/PMC12926123/full.md

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Source: https://tomesphere.com/paper/PMC12926123