# The emerging role of machine learning-based methods in cancer classification using microRNA

**Authors:** Zeinab Tariri, Mehdi Goodarzi, Atieh Nouralishahi, Malihe Sagheb Ray Shirazi, Meysam Mohammadikhah, Azita Sadeghzade, Hossein Gandomkar, Ehsan Maghrebi-Ghojogh

PMC · DOI: 10.1016/j.bbrep.2026.102506 · 2026-02-14

## TL;DR

Machine learning models using microRNA data can improve cancer classification and enable non-invasive diagnostics.

## Contribution

This paper reviews how machine learning methods enhance cancer classification by leveraging microRNA biomarkers.

## Key findings

- ML models using miRNA data can distinguish cancerous from normal tissues.
- Techniques like Random Forest and SVM improve breast cancer subtype classification.
- Deep learning aids in kidney cancer analysis using miRNA data.

## Abstract

Early detection and accurate classification of cancer are crucial to improving patient outcomes. Diagnosis and classification of tumors using conventional methods remains challenging. MicroRNAs (miRNAs) are potential biomarkers for accurate tumor classification and differentiation of tumor subtypes. In cancer progression, miRNAs act as oncogenes or tumor suppressors to regulate gene expression. As a result of their stability in bodily fluids such as blood, urine, and saliva, they are ideal for non-invasive diagnostic procedures. Machine learning (ML) models can identify discriminative miRNAs for various cancers, such as breast, lung, colorectal, and kidney cancers. The integration of ML with miRNA data has demonstrated significant potential for differentiating cancerous tissues from normal tissues and identifying clinically relevant biomarkers. For instance, techniques such as feature engineering and selection, including recursive ensemble selection and miRNA-mRNA network analysis, have been shown to enhance both model accuracy and interpretability. Methods based on Random Forest (RF) and Support Vector Machines (SVM) have successfully classified breast cancer subtypes, and miRNA signatures from fecal samples have been highly effective in diagnosing colorectal cancer. Furthermore, deep learning and neuro-fuzzy systems support kidney cancer analysis, highlighting miRNA-driven ML's role in cancer diagnostics and personalized treatment. This review illustrates the transformative potential of miRNA-driven ML models for advancing cancer diagnostics and enabling personalized treatment strategies.

•Early cancer detection and precise classification are key to better outcomes.•Standard diagnostics still struggle to distinguish cancer types and subtypes.•MicroRNAs influence cancer progression and are detectable in body fluids.•MicroRNAs show strong potential as biomarkers for tumor classification.•Machine learning helps identify microRNAs that differentiate cancer types.

Early cancer detection and precise classification are key to better outcomes.

Standard diagnostics still struggle to distinguish cancer types and subtypes.

MicroRNAs influence cancer progression and are detectable in body fluids.

MicroRNAs show strong potential as biomarkers for tumor classification.

Machine learning helps identify microRNAs that differentiate cancer types.

## Linked entities

- **Diseases:** breast cancer (MONDO:0004989), lung cancer (MONDO:0005138), colorectal cancer (MONDO:0005575), kidney cancer (MONDO:0002367)

## Full-text entities

- **Genes:** DROSHA (drosha ribonuclease III) [NCBI Gene 29102] {aka ETOHI2, HSA242976, RANSE3L, RN3, RNASE3L, RNASEN}, MIR145 (microRNA 145) [NCBI Gene 406937] {aka MIRN145, miR-145, miRNA145}, DGCR8 (DGCR8 microprocessor complex subunit) [NCBI Gene 54487] {aka C22orf12, DGCRK6, Gy1, pasha}, MIRLET7C (microRNA let-7c) [NCBI Gene 406885] {aka LET7C, MIRNLET7C, hsa-let-7c, let-7c}, ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064] {aka CD340, HER-2, HER-2/neu, HER2, MLN 19, MLN-19}, DICER1 (dicer 1, ribonuclease III) [NCBI Gene 23405] {aka DCR1, Dicer, Dicer1e, GLOW, HERNA, K12H4.8-LIKE}, PGR (progesterone receptor) [NCBI Gene 5241] {aka NR3C3, PR}, MIR200C (microRNA 200c) [NCBI Gene 406985] {aka MIRN200C, mir-200c}, MIR708 (microRNA 708) [NCBI Gene 100126333] {aka MIRN708, hsa-mir-708}, MIR23B (microRNA 23b) [NCBI Gene 407011] {aka MIRN23B, hsa-mir-23b, miRNA23B, mir-23b}, MIR183 (microRNA 183) [NCBI Gene 406959] {aka MIRN183, miR-183, miRNA183}, MIR4728 (microRNA 4728) [NCBI Gene 100616132], MIR95 (microRNA 95) [NCBI Gene 407052] {aka MIRN95, hsa-mir-95, miR-95}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, EREG (epiregulin) [NCBI Gene 2069] {aka EPR, ER, Ep}, ESR1 (estrogen receptor 1) [NCBI Gene 2099] {aka ER, ESR, ESRA, ESTRR, Era, NR3A1}, MIR21 (microRNA 21) [NCBI Gene 406991] {aka MIRN21, hsa-mir-21, miR-21, miRNA21}, MIR215 (microRNA 215) [NCBI Gene 406997] {aka MIRN215, miRNA215, mir-215}, MIR139 (microRNA 139) [NCBI Gene 406931] {aka MIR139-3p, MIRN139, mir-139}, MIR190B (microRNA 190b) [NCBI Gene 100126346] {aka MIRN190B, mir-190b}, XPO5 (exportin 5) [NCBI Gene 57510] {aka exp5}, MIR122 (microRNA 122) [NCBI Gene 406906] {aka MIR122A, MIRN122, MIRN122A, hsa-mir-122, miRNA122, miRNA122A}, MIR3615 (microRNA 3615) [NCBI Gene 100500847] {aka mir-3615}
- **Diseases:** SCC (MESH:D002294), non-small lung cancer (MESH:D002289), metabolic dysregulation (MESH:D021081), genetic abnormalities (MESH:D030342), Kidney cancer (MESH:D007680), ML (MESH:D007859), ADC (MESH:D000230), Cancer (MESH:D009369), CMS (MESH:C536089), HCC (MESH:D006528), Breast cancer (MESH:D001943), TNBC (MESH:D064726), Wilms tumor (MESH:D009396), rhabdoid tumor (MESH:D018335), Colorectal cancer (MESH:D015179), liver metastasis (MESH:D009362)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12925464/full.md

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Source: https://tomesphere.com/paper/PMC12925464