# Phylogenetic analysis reveals diversity in glycan biosynthesis in “Candidatus Accumulibacter”

**Authors:** Simon A. Eerden, Thomas Abeel, Mark C.M. van Loosdrecht, Samarpita Roy

PMC · DOI: 10.1016/j.bioflm.2026.100350 · 2026-02-05

## TL;DR

This paper explores the diversity of glycan biosynthesis in the genus 'Candidatus Accumulibacter' using genomic data.

## Contribution

The study identifies a conserved core and variable accessory set of nucleotide-sugars in glycan biosynthesis within the genus.

## Key findings

- A conserved core group of 9 nucleotide-sugars was found in most 'Ca. Accumulibacter' MAGs.
- An accessory set of 12 nucleotide-sugars showed irregular phylogenetic distribution and divergent evolutionary histories.
- The accessory nucleotide-sugars are enriched in rare sugars and suggest horizontal gene transfer influences.

## Abstract

Although biofilms are widespread in nature, the ecological roles and compositional diversity of the extracellular polymeric substances (EPS) forming these structures remain poorly understood. Here, we apply a bottom-up genomic approach by investigating the biosynthetic potential for glycan precursors in the genus “Candidatus Accumulibacter”, with a focus on assessing the intra-genus variability. Within a curated set of 61 “Ca. Accumulibacter” MAGs, our analysis revealed a dichotomy in glycan precursors between a conserved core group of 9 nucleotide-sugars and a variable accessory set of 12 nucleotide-sugars, out of 50 nucleotide-sugars tested. The core nucleotide-sugars in “Ca. Accumulibacter” are related to nucleotide-sugars also found to be widely distributed across the tree of life, whereas the accessory set is enriched in rare nucleotide-sugars. The accessory nucleotide-sugars show an irregular distribution across “Ca. Accumulibacter” phylogeny, and divergent evolutionary histories. This highlights the possibility that distinct evolutionary pressures act on different parts of the EPS-formation metabolism, leading to genotypic diversification driven by complex biological phenomena such as horizontal gene transfer that support the observed divergent evolutionary histories.

## Linked entities

- **Species:** Candidatus Accumulibacter (taxon 327159)

## Full-text entities

- **Diseases:** EPS (MESH:C535509)
- **Chemicals:** mannose (MESH:D008358), UDP-N-acetyl-glucosamine (MESH:D014537), UDP-glucuronic acid (MESH:D014535), UDP-GlcNAcA (MESH:C046669), CDP-glc (-), glucuronic acid (MESH:D020723), phosphate (MESH:D010710), hexoses (MESH:D006601), sugar (MESH:D000073893), fructose-6-phosphate (MESH:C027618), CDP-glucose (MESH:C073881), UDP-ManNAc (MESH:C059191), nitrogen (MESH:D009584), amino acids (MESH:D000596), UDP-glucose (MESH:D014532), dTDP-glucose (MESH:C103522), rhamnose (MESH:D012210), glycan (MESH:D011134), (N-acetyl-) glucosamine (MESH:D000117), polymers (MESH:D011108), carbon (MESH:D002244), monosaccharides (MESH:D009005), uronic acids (MESH:D014574), UDP-Gal (MESH:D014531), galacturonic acid (MESH:C007819), water (MESH:D014867), ADP-glucose (MESH:D000245), Nucleotide (MESH:D009711), LPS (MESH:D008070), biopolymers (MESH:D001704), UDP-galacturonic acid (MESH:C050306), perosamine (MESH:C057033), UDP-2,3-diacetamido-2,3-dideoxy-d-mannuronic acid (MESH:C506191), galactose (MESH:D005690), volatile fatty acids (MESH:D005232), hexosamines (MESH:D006595), ribulose-5-phosphate (MESH:C031524), sedoheptulose-7-phosphate (MESH:C020495), fucose (MESH:D005643), glucose (MESH:D005947), xanthan (MESH:C002563)
- **Species:** Dechloromonas aromatica (nom. nud.) (species) [taxon 259537], Rhizobium (genus) [taxon 379], Escherichia coli (E. coli, species) [taxon 562], Xanthomonas campestris (species) [taxon 339], Candidatus Accumulibacter (genus) [taxon 327159]

## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12925313/full.md

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Source: https://tomesphere.com/paper/PMC12925313