# The autophagy-senescence axis as a threshold model of aging and therapeutic targeting

**Authors:** Md Entaz Bahar, Jin Seok Hwang, Trang Huyen Lai, Kazi-Marjahan Akter, Rizi Firman Maulidi, Deok Ryong Kim

PMC · DOI: 10.1016/j.redox.2026.104079 · 2026-02-10

## TL;DR

This paper explains how autophagy and cellular aging interact in a stage-dependent way, offering a new model for developing targeted therapies for age-related diseases.

## Contribution

The paper introduces a threshold model to unify the dual roles of autophagy in aging and disease progression.

## Key findings

- Autophagy prevents senescence at low stress levels but supports it at high stress levels.
- Key signaling pathways like mTORC1 and p53 regulate the autophagy-senescence transition.
- Targeting autophagy with precision can lead to stage-specific anti-aging therapies.

## Abstract

Autophagy and cellular senescence are fundamental stress-response programs that critically shape aging and disease progression, yet their functional relationship has remained paradoxical. Autophagy is traditionally viewed as a cytoprotective process that preserves cellular homeostasis and delays senescence. In contrast, emerging evidence demonstrates that autophagy is also indispensable for the survival and pathological activity of established senescent cells. In this review, we propose a “threshold model” to reconcile these opposing roles and to provide a unified framework linking signal transduction, organelle quality control, and therapeutic intervention. According to this model, autophagy exerts stage-dependent functions governed by stress intensity and disease progression. Below a critical damage threshold, robust autophagic flux suppresses senescence initiation by maintaining mitochondrial integrity, limiting oxidative stress, and preserving proteostasis. Once this threshold is exceeded, autophagy is functionally reprogrammed to sustain the metabolic and biosynthetic demands of senescent cells, including production of the senescence-associated secretory phenotype (SASP). We highlight key signaling nodes that regulate this transition, including mTORC1, AMPK, p53, and p62, as well as spatial and organelle-specific mechanisms such as the TOR–autophagy spatial coupling compartment (TASCC), mitophagy failure, lipophagy blockade, and aberrant nucleophagy. These processes converge on innate immune pathways, notably cGAS–STING and NF-κB signaling, to drive chronic inflammation and tissue dysfunction. Importantly, we extend this mechanistic framework to clinical translation, synthesizing evidence from ongoing trials in cancer, neurodegeneration, metabolic liver disease, and fibrosis. We argue that effective targeting of the autophagy–senescence axis requires precision gerontology, integrating dynamic biomarkers to guide stage-specific interventions—autophagy activation for prevention and autophagy inhibition or senolysis for established disease. This threshold-based perspective provides a rational foundation for next-generation therapeutic strategies targeting aging and age-related disorders.

•Autophagy and senescence have opposing but interconnected roles in aging and disease.•Autophagy suppresses senescence at early stages but supports senescent cell survival later.•A threshold model explains stress- and stage-dependent autophagy reprogramming.•Precision targeting of autophagy enables stage-specific anti-aging and disease therapies.

Autophagy and senescence have opposing but interconnected roles in aging and disease.

Autophagy suppresses senescence at early stages but supports senescent cell survival later.

A threshold model explains stress- and stage-dependent autophagy reprogramming.

Precision targeting of autophagy enables stage-specific anti-aging and disease therapies.

## Linked entities

- **Genes:** Crtc (CREB-regulated transcription coactivator) [NCBI Gene 39970], PRKAA1 (protein kinase AMP-activated catalytic subunit alpha 1) [NCBI Gene 5562], TP53 (tumor protein p53) [NCBI Gene 7157], GTF2H1 (general transcription factor IIH subunit 1) [NCBI Gene 2965], CGAS (cyclic GMP-AMP synthase) [NCBI Gene 115004], STING1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 340061], NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790]
- **Diseases:** cancer (MONDO:0004992)

## Full-text entities

- **Genes:** MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, APP (amyloid beta precursor protein) [NCBI Gene 351] {aka AAA, ABETA, ABPP, AD1, APPI, CTFgamma}, PRKN (parkin RBR E3 ubiquitin protein ligase) [NCBI Gene 5071] {aka AR-JP, LPRS2, PARK2, PDJ}, RORC (RAR related orphan receptor C) [NCBI Gene 6097] {aka IMD42, NR1F3, RORG, RZR-GAMMA, RZRG, TOR}, ATG12 (autophagy related 12) [NCBI Gene 9140] {aka APG12, APG12L, FBR93, HAPG12}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, GDF15 (growth differentiation factor 15) [NCBI Gene 9518] {aka GDF-15, HG, MIC-1, MIC1, NAG-1, PDF}, DRAM1 (DNA damage regulated autophagy modulator 1) [NCBI Gene 55332] {aka DRAM}, RB1CC1 (RB1 inducible coiled-coil 1) [NCBI Gene 9821] {aka ATG17, CC1, FIP200, PPP1R131}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, LMNB1 (lamin B1) [NCBI Gene 4001] {aka ADLD, LMN, LMN2, LMNB, MCPH26}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, ATG7 (autophagy related 7) [NCBI Gene 10533] {aka APG7-LIKE, APG7L, GSA7, SCAR31}, THRB (thyroid hormone receptor beta) [NCBI Gene 7068] {aka C-ERBA-2, C-ERBA-BETA, ERBA2, GRTH, NR1A2, PRTH}, NUP62 (nucleoporin 62) [NCBI Gene 23636] {aka IBSN, SNDI, p62}, CGAS (cyclic GMP-AMP synthase) [NCBI Gene 115004] {aka C6orf150, D4, MB21D1, h-cGAS}, IGF1 (insulin like growth factor 1) [NCBI Gene 3479] {aka IGF, IGF-I, IGFI, MGF}, SNAR-E (small NF90 (ILF3) associated RNA E) [NCBI Gene 100170220], PINK1 (PTEN induced kinase 1) [NCBI Gene 65018] {aka BRPK, PARK6}, INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}, PRKAA1 (protein kinase AMP-activated catalytic subunit alpha 1) [NCBI Gene 5562] {aka AMPK, AMPK alpha 1, AMPKa1}, ATG16L1 (autophagy related 16 like 1) [NCBI Gene 55054] {aka APG16L, ATG16A, ATG16L, IBD10, WDR30}, HDAC9 (histone deacetylase 9) [NCBI Gene 9734] {aka HD7, HD7b, HD9, HDAC, HDAC7B, HDAC9B}, P4HB (prolyl 4-hydroxylase subunit beta) [NCBI Gene 5034] {aka CLCRP1, DSI, ERBA2L, GIT, P4Hbeta, PDI}, ULK1 (unc-51 like autophagy activating kinase 1) [NCBI Gene 8408] {aka ATG1, ATG1A, UNC51, Unc51.1, hATG1}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, SQSTM1 (sequestosome 1) [NCBI Gene 8878] {aka A170, DMRV, EBIAP, FTDALS3, NADGP, OSIL}, GPX4 (glutathione peroxidase 4) [NCBI Gene 2879] {aka GPx-4, GSHPx-4, MCSP, PHGPx, SMDS, snGPx}, SNCA (synuclein alpha) [NCBI Gene 6622] {aka NACP, PARK1, PARK4, PD1}, HMGB1 (high mobility group box 1) [NCBI Gene 3146] {aka HMG-1, HMG1, HMG3, SBP-1}, ERO1A (endoplasmic reticulum oxidoreductase 1 alpha) [NCBI Gene 30001] {aka ERO1-L, ERO1-L-alpha, ERO1-alpha, ERO1L, ERO1LA, Ero1alpha}, SEC22B (SEC22 homolog B, vesicle trafficking protein) [NCBI Gene 9554] {aka ERS-24, SEC22L1}, ATG5 (autophagy related 5) [NCBI Gene 9474] {aka APG5, APG5-LIKE, APG5L, ASP, SCAR25, hAPG5}, MUL1 (mitochondrial E3 ubiquitin protein ligase 1) [NCBI Gene 79594] {aka C1orf166, GIDE, MAPL, MULAN, RNF218}, CXCL8 (C-X-C motif chemokine ligand 8) [NCBI Gene 3576] {aka GCP-1, GCP1, IL8, LECT, LUCT, LYNAP}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, TRAF6 (TNF receptor associated factor 6) [NCBI Gene 7189] {aka MGC:3310, RNF85}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, BNIP3 (BCL2 interacting protein 3) [NCBI Gene 664] {aka HABON, NIP3}, PLIN2 (perilipin 2) [NCBI Gene 123] {aka ADFP, ADRP}, DNMT1 (DNA methyltransferase 1) [NCBI Gene 1786] {aka ADCADN, AIM, CXXC9, DNMT, HSN1E, MCMT}, H3P16 (H3 histone pseudogene 16) [NCBI Gene 644914] {aka H3.6, H3F3AP6, p21}, SIRT1 (sirtuin 1) [NCBI Gene 23411] {aka SIR2, SIR2L1, SIR2alpha}, HK2 (hexokinase 2) [NCBI Gene 3099] {aka HKII, HXK2}, MAP1LC3A (microtubule associated protein 1 light chain 3 alpha) [NCBI Gene 84557] {aka ATG8E, LC3, LC3A, MAP1ALC3, MAP1BLC3}, MAPT (microtubule associated protein tau) [NCBI Gene 4137] {aka DDPAC, FTD1, FTDP-17, MAPTL, MSTD, MTBT1}, STING1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 340061] {aka ERIS, MITA, MPYS, NET23, SAVI, STING}, LIPA (lipase A, lysosomal acid type) [NCBI Gene 3988] {aka CESD, LAL}, HIF1A (hypoxia inducible factor 1 subunit alpha) [NCBI Gene 3091] {aka HIF-1-alpha, HIF-1A, HIF-1alpha, HIF1, HIF1-ALPHA, MOP1}, CDKN2A (cyclin dependent kinase inhibitor 2A) [NCBI Gene 1029] {aka ARF, CAI2, CDK4I, CDKN2, CMM2, INK4}, IFNB1 (interferon beta 1) [NCBI Gene 3456] {aka IFB, IFF, IFN-beta, IFNB}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}
- **Diseases:** influenza (MESH:D007251), SASP (MESH:D008579), Alzheimer's and Parkinson's diseases (MESH:D010300), atherosclerosis (MESH:D050197), Mitochondrial dysfunction (MESH:D028361), Neurodegeneration (MESH:D019636), -associated diseases (MESH:D004194), Trauma (MESH:D014947), inflammation (MESH:D007249), sarcopenia (MESH:D055948), liver disease (MESH:D008107), CMA (MESH:C564093), Fibrosis (MESH:D005355), TASCC (MESH:D003161), CML (MESH:D015464), cytotoxic (MESH:D064420), DM (MESH:D009223), age- and (MESH:D019588), neuroinflammation (MESH:D000090862), neurotoxic (MESH:D020258), IPF (MESH:D054990), FMD (MESH:D007003), ALL (MESH:D054198), Diabetes mellitus (MESH:D003920), Cancer (MESH:D009369), Coronary Artery Disease (MESH:D003324), MASH (MESH:D005234), neuronal loss (MESH:D009410), Hypoxic (MESH:D002534), Cognitive Dysfunction (MESH:D003072), chronic (MESH:D002908), frailty (MESH:D000073496), hypoxia (MESH:D000860), Metabolic disease (MESH:D008659), osteoarthritis (MESH:D010003), -restricted eating (MESH:D002313)
- **Chemicals:** HCQ (MESH:D006886), H2O2 (MESH:D006861), Anti (-), superoxide (MESH:D013481), proline (MESH:D011392), lipofuscin (MESH:D008062), Pterostilbene (MESH:C107773), lipid peroxides (MESH:D008054), rapamycin (MESH:D020123), arginine (MESH:D001120), 17beta-estradiol (MESH:D004958), dasatinib (MESH:D000069439), cortisol (MESH:D006854), amino acid (MESH:D000596), quercetin (MESH:D011794), free fatty acids (MESH:D005230), iron (MESH:D007501), Resmetirom (MESH:C588408), lipid (MESH:D008055), epicatechin (MESH:D002392), leucine (MESH:D007930), Polyamine (MESH:D011073), ATP (MESH:D000255), polyphenol (MESH:D059808), metformin (MESH:D008687), NR (MESH:C018613), glycine (MESH:D005998), ROS (MESH:D017382), calcium (MESH:D002118), aldehydes (MESH:D000447), NAD + (MESH:D009243), Spermidine (MESH:D013095), 4-HNE (MESH:C027576)
- **Species:** Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** BRAFV600 E

## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12925196/full.md

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Source: https://tomesphere.com/paper/PMC12925196