# Enzyme promiscuity-driven co-production of flavonoid 7-O-glycosides in engineered Saccharomyces cerevisiae

**Authors:** Xinjia Tan, Shasha Zuo, Fanglin Hu, Zhiqiang Xiao, Yongtong Wang, Siqi Zhang, Qiyuan Lu, Yifei Zhao, Jiaxu Chen, Liusha Fan, Juan Liu, Yang Shan

PMC · DOI: 10.1016/j.synbio.2026.01.033 · 2026-02-12

## TL;DR

Scientists engineered yeast to produce flavonoid 7-O-glycosides using enzyme flexibility, offering a sustainable alternative to plant extraction.

## Contribution

A novel strategy to utilize enzyme promiscuity in yeast for co-producing flavonoid mixtures through metabolic context engineering.

## Key findings

- Optimized NAR biosynthesis achieved 318.08 mg/L yield.
- Co-production of ISOEIN and NAR 7-O-glycosides was efficiently realized.
- A sustainable platform for flavonoid mixtures was established for functional food applications.

## Abstract

Flavonoid 7-O-glycosides are a key class of bioactive flavonoid derivatives with broad application prospects in functional foods and nutraceuticals. Currently, their production is mainly dependent on unsustainable plant extraction or inefficient chemical synthesis. Microbial synthesis provides a promising green alternative for producing such functional ingredients; however, enzyme promiscuity hinders their ability to form specific products exclusively. To address this issue, we propose a strategy to harness enzyme promiscuity by engineering the metabolic context. This approach purposefully utilizes enzyme's catalytic flexibility to co-produce flavonoid 7-O-glycoside mixtures. We first optimized the (2S)-naringenin (NAR) biosynthesis module by overexpressing key enzymes, relieving feedback inhibition, and enhancing acetyl-CoA supply, achieving a yield of 318.08 mg/L NAR. Subsequently, by harnessing the promiscuity of 7-O-glucosyltransferase and implementing strategies including glycosidase elimination, S-adenosyl-l-methionine balancing, and uridine diphosphate-glucose supply optimization, we achieved efficient co-production of (2S)-isosakuranetin (ISOEIN) 7-O-glycoside and NAR 7-O-glycoside. This study establishes a sustainable and efficient biosynthesis platform for the production of complex flavonoid mixtures as potential functional food ingredients, demonstrates a green biosynthesis route for food-grade natural products, and exemplifies a novel paradigm of exploiting enzyme promiscuity through metabolic context engineering in microbial systems. This strategy is expected to be extendable to the synthesis of other structurally similar bioactive compounds for food and health applications.

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## Linked entities

- **Chemicals:** (2S)-naringenin (PubChem CID 439246), S-adenosyl-l-methionine (PubChem CID 34755), uridine diphosphate-glucose (PubChem CID 8629)
- **Species:** Saccharomyces cerevisiae (taxon 4932)

## Full-text entities

- **Genes:** DPP1 (bifunctional diacylglycerol diphosphate phosphatase/phosphatidate phosphatase) [NCBI Gene 851878] {aka ZRG1}, ALD6 (aldehyde dehydrogenase (NADP(+)) ALD6) [NCBI Gene 856044] {aka ALD1}, MET2 (homoserine O-acetyltransferase) [NCBI Gene 855444], SAH1 (adenosylhomocysteinase) [NCBI Gene 856766], ARO10 (phenylpyruvate decarboxylase ARO10) [NCBI Gene 851987], SAM2 (methionine adenosyltransferase SAM2) [NCBI Gene 852113] {aka ETH2}, SAM1 (methionine adenosyltransferase SAM1) [NCBI Gene 850877] {aka ETH10}, ADH7 (NADP-dependent alcohol dehydrogenase) [NCBI Gene 850469] {aka ADHVII}, IDP2 (isocitrate dehydrogenase (NADP(+)) IDP2) [NCBI Gene 850871], LPP1 (phosphatidate phosphatase LPP1) [NCBI Gene 852114], YHM2 (Yhm2p) [NCBI Gene 855282], EXG1 (glucan 1,3-beta-glucosidase) [NCBI Gene 851007] {aka BGL1, SCW6}, ACS2 (acetate--CoA ligase ACS2) [NCBI Gene 850846], PDC5 (indolepyruvate decarboxylase 5) [NCBI Gene 850825], ADO1 (adenosine kinase) [NCBI Gene 853569], STR2 (cystathionine gamma-synthase) [NCBI Gene 853594], PGM2 (phosphoglucomutase PGM2) [NCBI Gene 855131] {aka GAL5}, MET6 (5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase) [NCBI Gene 856825], PYC1 (pyruvate carboxylase 1) [NCBI Gene 852818], EGH1 (hydrolase) [NCBI Gene 854824], ADH6 (NADP-dependent alcohol dehydrogenase) [NCBI Gene 855368] {aka ADHVI}, ARO9 (aromatic-amino-acid:2-oxoglutarate transaminase) [NCBI Gene 856539], CYB5 (Cyb5p) [NCBI Gene 855612], UGP1 (UTP glucose-1-phosphate uridylyltransferase) [NCBI Gene 853830], ACS1 (acetate--CoA ligase 1) [NCBI Gene 851245] {aka FUN44}
- **Diseases:** toxicity (MESH:D064420), inflammatory (MESH:D007249)
- **Chemicals:** glucose (MESH:D005947), baicalein (MESH:C006680), Flavonoids (MESH:D005419), glycosides (MESH:D006027), tryptophan (MESH:D014364), anthocyanin (MESH:D000872), cysteine (MESH:D003545), (2S)-naringenin (MESH:C005273), p-CA (MESH:C495469), kaempferol 3-O-glucoside (MESH:C511963), UDP-RHM (MESH:C022183), Ampicillin (MESH:D000667), polyphenols (MESH:D059808), ATP (MESH:D000255), phenylpyruvate (MESH:C031606), citrate (MESH:D019343), pelargonidin 3-O-glucoside (MESH:C078485), l-phenylalanine (MESH:D010649), fatty acid (MESH:D005227), rhamnose (MESH:D012210), shikimate (MESH:C000723335), aspartate (MESH:D001224), UDP-glucose (MESH:D014532), amino acids (MESH:D000596), Hcys (MESH:D006710), N7 (MESH:C106144), 5-fluoroorotic acid (MESH:C001242), fructose-6-phosphate (MESH:C027618), Cm1,2-RhaT (-), NAI (MESH:C005274), PON (MESH:C119641), S-adenosyl-l-homocysteine (MESH:D012435), apigenin 7-O-glucuronide (MESH:C456097), UDP-4-keto-6-deoxyglucose (MESH:C115446), erythrose-4-phosphate (MESH:C026959), aglycone (MESH:C458179), acetyl-CoA (MESH:D000105), nucleotide (MESH:D009711), S-adenosyl-l-methionine (MESH:D012436), malonyl-CoA (MESH:D008316), HES (MESH:C013015), leucine (MESH:D007930), water (MESH:D014867), l-tyrosine (MESH:D014443), PEP (MESH:D010728), NAR 7-O-glucoside (MESH:C529068), acetonitrile (MESH:C032159), glucose-1-phosphate (MESH:C031590), agar (MESH:D000362), HPP (MESH:C085216), carbon (MESH:D002244), para-hydroxy-phenylpyruvate (MESH:C010590), uracil (MESH:D014498), glucose-6-phosphate (MESH:D019298), histidine (MESH:D006639), formic acid (MESH:C030544), sugar (MESH:D000073893), oxygen (MESH:D010100), AAA (MESH:D024322), l-methionine (MESH:D008715)
- **Species:** Mentha x piperita (peppermint, species) [taxon 34256], Petroselinum crispum (parsley, species) [taxon 4043], Citrus maxima (buntan, species) [taxon 37334], Citrus trifoliata (hardy orange, species) [taxon 37690], Saccharopolyspora spinosa (species) [taxon 60894], Albuca bracteata (sea-onion, species) [taxon 82047], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Aspergillus nidulans (species) [taxon 162425], Glycyrrhiza echinata (hedgehog licorice, species) [taxon 46348], Salmonella enterica (species) [taxon 28901], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Catharanthus roseus (chatas, species) [taxon 4058], Yarrowia lipolytica (species) [taxon 4952], Mus musculus (house mouse, species) [taxon 10090], Styphnolobium japonicum (Japanese pagoda tree, species) [taxon 3897], Escherichia coli (E. coli, species) [taxon 562], Glycine max (soybean, species) [taxon 3847], Vitreoscilla (genus) [taxon 59], Medicago sativa (alfalfa, species) [taxon 3879]
- **Mutations:** C for 3-5, S1157A, G141S, cysteine/aspartate, K229L
- **Cell lines:** -7 — Cricetulus griseus (Chinese hamster), Spontaneously immortalized cell line (CVCL_H340), XJ29-9 — Mus musculus (Mouse), Hybridoma (CVCL_A0UN), SQ05 — Homo sapiens (Human), Lung squamous cell carcinoma, Cancer cell line (CVCL_4900), -10 — Mus musculus (Mouse), Hybridoma (CVCL_C4R4), pADH2 — Homo sapiens (Human), Colon carcinoma, Cancer cell line (CVCL_A628), -6 — Homo sapiens (Human), Tongue squamous cell carcinoma, Cancer cell line (CVCL_5985), XJ29-8 — Mus musculus (Mouse), Hybridoma (CVCL_XH64), -1 — Mus musculus (Mouse), Hybridoma (CVCL_C7RB), XJ17-6 — Mus musculus (Mouse), Embryonic stem cell (CVCL_PZ94)

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12925191/full.md

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Source: https://tomesphere.com/paper/PMC12925191