# Phosphorylation of FBXL3 mediates GLDC polyubiquitination to suppress MHC-I expression and promote cancer immune evasion

**Authors:** Rui Liu, Shu Li

PMC · DOI: 10.1016/j.cellin.2026.100308 · 2026-02-03

## TL;DR

This study reveals how cancer cells avoid immune detection by altering MHC-I expression through a complex signaling pathway involving GLDC and FBXL3.

## Contribution

The novel contribution is identifying the SRC-FBXL3-GLDC-MHC-I regulatory circuit that mediates immune evasion in tumors.

## Key findings

- GLDC is polyubiquitinated at K636 following EGFR activation.
- SRC-mediated FBXL3 phosphorylation at Y306 enables interaction with GLDC to suppress MHC-I expression.
- Phosphorylation of FBXL3Y306 inhibits CD8+ T cell immunity in tumors.

## Abstract

Glycine decarboxylase (GLDC) is overexpressed in multiple tumor types and contributes to tumorigenesis or immune evasion by unclarified mechanisms. Here we report that GLDC is polyubiquitinated at K636 following EGFR activation, which drives GLDC-dependent transcriptional inhibition of MHC-I genes and induces tumor cells to evade CD8+ T cell-mediated immunosurveillance. Mechanistically, EGFR activation triggers SRC-mediated FBXL3 phosphorylation at Y306, enabling its interaction with GLDC in nucleus. FBXL3 targets GLDCK636 for K63-linked polyubiquitination, and promotes the interaction of GLDC with SMARCE1/DMAP1 to inhibit STAT1-triggered transcriptional activation, resulting in transcriptional inhibition of downstream MHC-I genes. Phosphorylation of FBXL3Y306 decreases MHC-I levels in tumor cells and inhibits CD8+ T cells immunity in tumors. Consistently, inhibitors of SRC improves tumor-specific CD8+ T cells functions in TME and sensitizes antitumor effects of anti-PD-1 therapy. Our findings reveal an SRC-FBXL3-GLDC-MHC-I regulatory circuit that underlies CD8+ T cells immune evasion, and provide a potential therapeutic target to enhance ICB therapy.

Image 1

•GLDC is polyubiquitinated at K636 following EGFR activation.•EGFR activation triggers SRC-mediated FBXL3 phosphorylation at Y306.•Phosphorylation of FBXL3Y306 targets GLDCK636 for K63-linked polyubiquitination.•GLDCK636 polyubiquitination and FBXL3Y306 phosphorylation decrease MHC-I levels and inhibit CD8+ T cells immunity in tumors.

GLDC is polyubiquitinated at K636 following EGFR activation.

EGFR activation triggers SRC-mediated FBXL3 phosphorylation at Y306.

Phosphorylation of FBXL3Y306 targets GLDCK636 for K63-linked polyubiquitination.

GLDCK636 polyubiquitination and FBXL3Y306 phosphorylation decrease MHC-I levels and inhibit CD8+ T cells immunity in tumors.

## Linked entities

- **Genes:** GLDC (glycine decarboxylase) [NCBI Gene 2731], FBXL3 (F-box and leucine rich repeat protein 3) [NCBI Gene 26224], EGFR (epidermal growth factor receptor) [NCBI Gene 1956], SRC (SRC proto-oncogene, non-receptor tyrosine kinase) [NCBI Gene 6714], SMARCE1 (SWI/SNF related BAF chromatin remodeling complex subunit E1) [NCBI Gene 6605], DMAP1 (DNA methyltransferase 1 associated protein 1) [NCBI Gene 55929], STAT1 (signal transducer and activator of transcription 1) [NCBI Gene 6772], MHC-I (BOLA class I histocompatibility antigen, alpha chain BL3-7) [NCBI Gene 100009719]

## Full-text entities

- **Genes:** USP10 (ubiquitin specific peptidase 10) [NCBI Gene 9100] {aka UBPO}, GLDC (glycine decarboxylase) [NCBI Gene 2731] {aka GCE, GCE1, GCSP, HYGN1}, Gldc (glycine decarboxylase) [NCBI Gene 104174] {aka D030049L12Rik, D19Wsu57e, b2b2679Clo}, FBXL3 (F-box and leucine rich repeat protein 3) [NCBI Gene 26224] {aka FBL3, FBL3A, FBXL3A, IDDSFAS}, NFX1 (nuclear transcription factor, X-box binding 1) [NCBI Gene 4799] {aka NFX2, TEG-42, Tex42}, Kitl (kit ligand) [NCBI Gene 17311] {aka Clo, Con, Gb, Kitlg, Mgf, SCF}, B2m (beta-2 microglobulin) [NCBI Gene 12010] {aka Ly-m11, beta2-m, beta2m}, Dnase1 (deoxyribonuclease I) [NCBI Gene 13419] {aka DNaseI, Dnl1}, Dmap1 (DNA methyltransferase 1-associated protein 1) [NCBI Gene 66233] {aka 1500016M21Rik, DNMAP1, DNMTAP1, Dmtap1, mKIAA1425}, SRC (SRC proto-oncogene, non-receptor tyrosine kinase) [NCBI Gene 6714] {aka ASV, SRC1, THC6, c-SRC, p60-Src}, Cry1 (cryptochrome circadian regulator 1) [NCBI Gene 12952] {aka Phll1}, Dnmt1 (DNA methyltransferase 1) [NCBI Gene 13433] {aka Cxxc9, Dnmt, Dnmt1o, MCMT, MTase, Met-1}, DMAP1 (DNA methyltransferase 1 associated protein 1) [NCBI Gene 55929] {aka DNMAP1, DNMTAP1, EAF2, MEAF2, SWC4}, SMARCE1 (SWI/SNF related BAF chromatin remodeling complex subunit E1) [NCBI Gene 6605] {aka BAF57, CSS5}, BRCC3 (BRCA1/BRCA2-containing complex subunit 3) [NCBI Gene 79184] {aka BRCC36, C6.1A, CXorf53}, KIT (KIT proto-oncogene, receptor tyrosine kinase) [NCBI Gene 3815] {aka C-Kit, CD117, MASTC, PBT, SCFR}, Stat1 (signal transducer and activator of transcription 1) [NCBI Gene 20846] {aka 2010005J02Rik}, KDM2A (lysine demethylase 2A) [NCBI Gene 22992] {aka CXXC8, FBL11, FBL7, FBXL11, JHDM1A, LILINA}, USP11 (ubiquitin specific peptidase 11) [NCBI Gene 8237] {aka UHX1}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, Irf1 (interferon regulatory factor 1) [NCBI Gene 16362] {aka Irf-1}, Rbx1 (ring-box 1) [NCBI Gene 56438] {aka 1500002P15Rik, ROC1}, PDCD1 (programmed cell death 1) [NCBI Gene 5133] {aka ADMIO4, AIMTBS, CD279, PD-1, PD1, SLEB2}, Gzmb (granzyme B) [NCBI Gene 14939] {aka CCP-1/C11, CCP1, Ctla-1, Ctla1, GZB}, MYCN (MYCN proto-oncogene, bHLH transcription factor) [NCBI Gene 4613] {aka FGLDS1, MODED, MPAPA, MYCNsORF, MYCNsPEP, N-myc}, Cd8a (CD8 subunit alpha) [NCBI Gene 12525] {aka Ly-2, Ly-35, Ly-B, Lyt-2}, Ifng (interferon gamma) [NCBI Gene 15978] {aka IFN-g, If2f, Ifg}, Skp1 (S-phase kinase-associated protein 1) [NCBI Gene 21402] {aka 15kDa, 2610043E24Rik, 2610206H23Rik, EMC19, OCP-II, OCP2}, OTUB1 (OTU deubiquitinase, ubiquitin aldehyde binding 1) [NCBI Gene 55611] {aka HSPC263, OTB1, OTU1}, USP22 (ubiquitin specific peptidase 22) [NCBI Gene 23326] {aka USP3L}, Ube2l6 (ubiquitin-conjugating enzyme E2L 6) [NCBI Gene 56791] {aka 2810489I21Rik, RIG-B, UBCH8, Ubce8, Ubcm8}, UCHL5 (ubiquitin C-terminal hydrolase L5) [NCBI Gene 51377] {aka CGI-70, INO80R, UCH-L5, UCH37}, UCHL1 (ubiquitin C-terminal hydrolase L1) [NCBI Gene 7345] {aka HEL-117, HEL-S-53, NDGOA, PARK5, PGP 9.5, PGP9.5}, RNF138 (ring finger protein 138) [NCBI Gene 51444] {aka HSD-4, NARF, STRIN, hNARF}, Cul1 (cullin 1) [NCBI Gene 26965] {aka Cul-1}, Ptprc (protein tyrosine phosphatase receptor type C) [NCBI Gene 19264] {aka B220, CD45R, Cd45, L-CA, Ly-5, Lyt-4}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, Actb (actin, beta) [NCBI Gene 11461] {aka Actx, E430023M04Rik, beta-actin}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, TRAF4 (TNF receptor associated factor 4) [NCBI Gene 9618] {aka CART1, MLN62, RNF83}, Mul1 (mitochondrial ubiquitin ligase activator of NFKB 1) [NCBI Gene 68350] {aka 0610009K11Rik, Gide, Tnrip-1}, Nlrc5 (NLR family, CARD domain containing 5) [NCBI Gene 434341] {aka NOD27}, Cry2 (cryptochrome circadian regulator 2) [NCBI Gene 12953] {aka D130054K12Rik}, EGF (epidermal growth factor) [NCBI Gene 1950] {aka HOMG4, URG}, P9Ehs1 (protein, Chr 9, NIEHS 1) [NCBI Gene 109957], Fbxl3 (F-box and leucine-rich repeat protein 3) [NCBI Gene 50789] {aka FBK, Fbl3a, Fbxl3a, Ovtm, Play68}, USP5 (ubiquitin specific peptidase 5) [NCBI Gene 8078] {aka ISOT}, STAT1 (signal transducer and activator of transcription 1) [NCBI Gene 6772] {aka CANDF7, IMD31A, IMD31B, IMD31C, ISGF-3, STAT91}, Pdcd1 (programmed cell death 1) [NCBI Gene 18566] {aka Ly101, PD-1, Pdc1}, Smarce1 (SWI/SNF related BAF chromatin remodeling complex subunit E1) [NCBI Gene 57376] {aka 2810417B20Rik, 5830412H02Rik, 9030408N19Rik, Baf27}, Src (src proto-oncogene, non-receptor tyrosine kinase) [NCBI Gene 20779] {aka pp60c-src}, Egfr (epidermal growth factor receptor) [NCBI Gene 13649] {aka 9030024J15Rik, Erbb, Errb1, Errp, Wa5, wa-2}
- **Diseases:** mycoplasma (MESH:D009175), deficient (MESH:D007153), glioma (MESH:D005910), ulcers (MESH:D014456), GLDC-deficient (MESH:D020158), Tumor (MESH:D009369), tumorigenesis (MESH:D063646), NSCLC (MESH:D002289), glioblastoma (MESH:D005909), neuroblastomas (MESH:D009447), hepatocellular carcinoma (MESH:D006528), neural tube defect (MESH:D009436)
- **Chemicals:** HEPES (MESH:D006531), puromycin (MESH:D011691), penicillin (MESH:D010406), NaCl (MESH:D012965), Percoll (MESH:C016039), leupeptin (MESH:C032854), MgCl2 (MESH:D015636), Aladdin (-), streptomycin (MESH:D013307), Triton X-100 (MESH:D017830), EDTA (MESH:D004492), Dasatinib (MESH:D000069439), NP-40 (MESH:C010615), Sepharose (MESH:D012685), Saracatinib (MESH:C515233), Amuvatinib (MESH:C521047), polybrene (MESH:D006583), ATP (MESH:D000255), tyrosine (MESH:D014443), Afatinib (MESH:D000077716), glycine (MESH:D005998), sarcosine (MESH:D012521), formaldehyde (MESH:D005557), Ruxolitinib (MESH:C540383), HCl (MESH:D006851), MnCl2 (MESH:C025340), SDS (MESH:D012967), PBS (MESH:D007854), calcium phosphate (MESH:C020243), DTT (MESH:D004229)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090], Oryctolagus cuniculus (domestic rabbit, species) [taxon 9986]
- **Mutations:** K636R, K641R, K636, lysine residues are replaced with arginine, 5 tyrosine residues to phenylalanine, M glycine for 5, Y1008, Y1008F, V999, V999A
- **Cell lines:** HEK293 — Homo sapiens (Human), Transformed cell line (CVCL_0045), A549 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_0023), Balb/c — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0184), MC38 — Mus musculus (Mouse), Mouse colon adenocarcinoma, Cancer cell line (CVCL_B288), C57bl/6j — Cricetulus griseus (Chinese hamster), Spontaneously immortalized cell line (CVCL_B3UN), H1299 — Homo sapiens (Human), Lung large cell carcinoma, Cancer cell line (CVCL_0060), CT26 — Mus musculus (Mouse), Mouse colon adenocarcinoma, Cancer cell line (CVCL_7254)

## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12924200/full.md

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Source: https://tomesphere.com/paper/PMC12924200