# Assessing Prokaryotic Benthic Communities in the Red Sea

**Authors:** Christopher A. Hempel, Larissa Frühe, Sofia Frappi, Elisa Laiolo, Kah Kheng Lim, Diego E. Rivera Rosas, Amal A. Bajaffer, Wajitha J. R. M. Sait, Alexandra Steckbauer, Taiba Alamoudi, Jacqueline V. Alva García, Shannon G. Klein, Anieka J. Parry, Mohammad A. Qurban, Vincent A. Pieribone, Carlos Angulo‐Preckler, Carlos M. Duarte

PMC · DOI: 10.1111/1462-2920.70216 · 2026-02-21

## TL;DR

This study explores how prokaryotic communities in Red Sea sediments vary with depth, latitude, and oxygen levels, revealing distinct patterns and adaptations in extreme environments.

## Contribution

The study provides a baseline for understanding prokaryotic benthic community distribution and environmental drivers in the unique Red Sea environment.

## Key findings

- Bathybenthic communities showed low OTU richness due to uniform environmental conditions at depth.
- Southern Red Sea shallower communities had higher OTU richness and different bacterial abundances compared to northern regions.
- Extreme environments like the Atlantis II brine pool supported specialized microbial communities adapted to hypersalinity.

## Abstract

Marine sediments host diverse benthic prokaryotic communities that are integral to global biogeochemical cycles. However, the spatial distribution and environmental drivers of these communities, particularly in unique environments like the Red Sea, remain largely underexplored. In this study, we examine benthic prokaryotic communities sampled during the Red Sea Decade Expedition (RSDE) using 16S rRNA gene sequencing across five major regions along the Red Sea's latitudinal gradient and three depth strata. Our findings reveal distinct biogeographical patterns shaped by depth, latitude, and oxygen availability, with clear shifts in microbial community composition across the epibenthic, mesobenthic and bathybenthic zones. Bathybenthic communities exhibited consistently low levels of OTU richness throughout the Red Sea, likely due to uniform niche environmental conditions at depth, while shallower communities showed higher OTU richness towards the Southern Red Sea. The southern region harboured higher relative abundances of Chloroflexi and reduced relative abundances of Proteobacteria and Acidobacteriota relative to the northern regions. Extreme environments, such as the Atlantis II brine pool, supported specialised microbial communities likely adapted to extreme conditions like hypersalinity. This study established a critical baseline for understanding the responses of marine microbial communities to climate change and their roles in biogeochemical processes.

Prokaryotic benthic communities in the Red Sea are shaped by depth, latitude, and oxygen availability. Deep‐sea communities exhibited low variance in OTU richness, while shallower communities showed higher OTU richness towards the Southern Red Sea. Extreme environments supported specialised microbial communities likely adapted to extreme conditions like hypersalinity.

## Full-text entities

- **Genes:** CD1C (CD1c molecule) [NCBI Gene 911] {aka BDCA1, CD1, R7}
- **Chemicals:** O2 (MESH:D010100), silicate (MESH:D017640), carbon (MESH:D002244), chlorophyll (MESH:D002734), Water (MESH:D014867), NaOH (MESH:D012972), borosilicate (-), sodium thiosulfate (MESH:C017717), Manganese sulfate monohydrate (MESH:C039798), NaI (MESH:D012974), sulfuric acid (MESH:C033158)
- **Species:** Planctomycetota (phylum) [taxon 203682], Nitrospiria (class) [taxon 203693], Pseudomonadota (proteobacteria, phylum) [taxon 1224], Actinomycetota (actinobacteria, phylum) [taxon 201174], Acidobacteriota (phylum) [taxon 57723], Nitrospirota (phylum) [taxon 40117]

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12924112/full.md

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Source: https://tomesphere.com/paper/PMC12924112