# Cholinergic signaling modulates intestinal pathophysiology in a Drosophila model of cystic fibrosis

**Authors:** Elizabeth A. Lane, Afroditi Petsakou, Ying Liu, Weihang Chen, Mujeeb Qadiri, Yanhui Hu, Norbert Perrimon

PMC · DOI: 10.1371/journal.pgen.1012048 · PLOS Genetics · 2026-02-17

## TL;DR

This study uses fruit flies to model gut issues in cystic fibrosis and finds that boosting cholinergic signaling could help alleviate gastrointestinal symptoms.

## Contribution

The study is the first to show that CFTR loss alters cholinergic signaling and identifies Ace and Fkh as genetic modifiers in CF gut pathogenesis.

## Key findings

- Enterocyte-specific knockdown of Cftr in Drosophila recapitulates CF gut pathologies like reduced motility and nutrient malabsorption.
- Upregulation of acetylcholine esterase (Ace) reduces cholinergic signaling in CF model guts.
- Restoring cholinergic signaling via Ace knockdown rescues CF-associated gut phenotypes.

## Abstract

Cystic fibrosis (CF) is a monogenic genetic disease caused by mutations in the Cystic Fibrosis Transmembrane conductance Regulator (CFTR) chloride/bicarbonate channel, which is expressed in certain epithelial cells. Current therapies focus on restoring CFTR function, but many gut-related pathologies persist, highlighting the need for complementary treatments to improve the quality of life of people with CF. In this study, we use Drosophila melanogaster as a model to investigate the gut-specific effects of Cftr loss. We demonstrate that enterocyte specific knockdown of Cftr in flies recapitulates several CF pathologies, including reduced intestinal motility, nutrient malabsorption, and decreased energy stores. Using single-nuclei RNA sequencing (snRNA-seq), we identify significant transcriptional changes in the CF model gut, including the upregulation of acetylcholine esterase (Ace, human AChE), which leads to reduced cholinergic signaling. Cholinergic signaling has been shown to affect CFTR function but this is the first time CFTR loss of function has been shown to alter cholinergic signaling. Functional assays confirm that cholinergic sensitivity is diminished in CF guts. Furthermore, restoring cholinergic signaling via Ace knockdown rescues multiple CF-associated phenotypes. Additionally, we identify the transcription factor Fork head (Fkh), the Drosophila homolog of human FOXA1/FOXA2, which is known to be a positive regulator of Cftr transcription in the intestine, as a positive regulator of Ace expression in CF guts. This study establishes the Drosophila gut as a powerful model to investigate CF pathogenesis, genetic modifiers, and identifies Ace and fkh as genetic modifiers. This work also suggests that enhancing cholinergic signaling may represent a viable therapeutic strategy for gastrointestinal manifestations of CF.

Cystic fibrosis (CF) is a genetic disease that causes complications in multiple organ systems, including the lungs and gastrointestinal tract. While recent therapies have greatly improved life span and respiratory outcomes in people with CF (pwCF), they continue to report significant gastrointestinal symptoms that impact their quality of life. Therefore, there is a need to better understand the progression of CF in the gut and identify gut specific therapeutic targets to improve patient quality of life. In this study we use Drosophila to model gut specific complications of CF and show our model recapitulates many CF clinical presentations. Furthermore, we identify acetylcholine esterase (Ace) as a gene that is increased in our CF model guts and is important for the development of CF pathologies. We additionally perform a screen to identify a transcriptional regulator of Ace, whose genetic manipulation also regulates CF phenotypes. Our findings not only identify a potential target to alleviate GI symptoms in patients with CF, but also validate the Drosophila gut as a robust model for studying CF pathogenesis, genetic modifiers, and screening therapeutics.

## Linked entities

- **Genes:** CFTR (CF transmembrane conductance regulator) [NCBI Gene 1080], CFTR (CF transmembrane conductance regulator) [NCBI Gene 1080], ACE (angiotensin I converting enzyme) [NCBI Gene 1636], fkh (fork head) [NCBI Gene 43383], FOXA1 (forkhead box A1) [NCBI Gene 3169], FOXA2 (forkhead box A2) [NCBI Gene 3170]
- **Diseases:** cystic fibrosis (MONDO:0009061), CF (MONDO:0009061)
- **Species:** Drosophila melanogaster (taxon 7227)

## Full-text entities

- **Genes:** CFTR (CF transmembrane conductance regulator) [NCBI Gene 1080] {aka ABC35, ABCC7, CF, CFTR/MRP, MRP7, TNR-CFTR}, a6 (a6) [NCBI Gene 31127] {aka CG3771, Dmel\CG3771, EG:9D2.3}, mex1 (midgut expression 1) [NCBI Gene 39677] {aka CG7936, Dmel\CG7936}, ITP (Ion transport peptide) [NCBI Gene 37921] {aka BcDNA:SD05282, CG13586, CHH-like, Dmel\CG13586, Drm-ITP, DrmITP}, Thor (thor) [NCBI Gene 33569] {aka 153432_at, 43-BP, 4E-BP, 4E-BP1, 4EBP, 4e-BP}, yki (yorkie) [NCBI Gene 37851] {aka CG4005, Dmel\CG4005, YAP, Yap, Yap/Taz, Yorkie}, fkh (fork head) [NCBI Gene 43383] {aka CG10002, Dm-FoxA, Dmel\CG10002, Dmfkh, FoxA, Sebp2}, Myo31DF (Myosin 31DF) [NCBI Gene 34445] {aka CG7438, Dm IA, DmIA, Dmel\CG7438, DroMIA, IA}, AP2B1 (adaptor related protein complex 2 subunit beta 1) [NCBI Gene 163] {aka ADTB2, AP105B, AP2-BETA, CLAPB1}, upd3 (unpaired 3) [NCBI Gene 3346149] {aka CG15062, CG15062/CG5963, CG33542, CG5963, Dmel\CG33542, Unpaireds}, ACHE (acetylcholinesterase (Yt blood group)) [NCBI Gene 43] {aka ACEE, ARACHE, N-ACHE, YT}, tub (tube) [NCBI Gene 40554] {aka CG10520, Dmel\CG10520, TUBE, Tube}, Smurf (SMAD specific E3 ubiquitin protein ligase) [NCBI Gene 36999] {aka CG4943, D-smurf, DSmurf, Dmel\CG4943, Dsmurf, LACK}, Mgtor (Megator) [NCBI Gene 36264] {aka Bx34, CG8274, Dmel\CG8274, MTOR, Mtor, TPR}, mex (Malic enzyme modifier) [NCBI Gene 45334], Pvf1 (PDGF- and VEGF-related factor 1) [NCBI Gene 32876] {aka CG7103, DmVEGF-1, Dmel\CG7103, EP1624, PVF, PVFs}, RpL32 (Ribosomal protein L32) [NCBI Gene 43573] {aka 143250_at, BcDNA:RH03940, CG7939, Dmel\CG7939, L32, L32e}, His3.3B (Histone H3.3B) [NCBI Gene 31848] {aka CG8989, Dmel\CG8989, H3.3, H3.3B, His 3.3 B, His 3.3B}, ImpL2 (Ecdysone-inducible gene L2) [NCBI Gene 38513] {aka CG15009, CT34862, Dmel\CG15009, GH28, IMP-L2, Imp-12}, Ace (Acetylcholine esterase) [NCBI Gene 41625] {aka ACHE, AChE, AcChE, AchE, CG17907, CHE}, betaTub60D (beta-Tubulin at 60D) [NCBI Gene 37888] {aka 143391_i_at, 3t, B3t, BETA 60D, CG3401, D.m.BETA-60D}
- **Diseases:** WT (MESH:D006969), tumorigenesis (MESH:D063646), genetic disease (MESH:D030342), gut dysfunction (MESH:C535334), bowel obstructions (MESH:D012778), gastrointestinal symptoms (MESH:D012817), inflammation (MESH:D007249), complications in the (MESH:D008107), CF (MESH:D003550), intestinal cancers (MESH:D007414), dysbiosis (MESH:D064806), lung complications (MESH:D008171), cancer (MESH:D009369), constipation (MESH:D003248), gastrointestinal cancers (MESH:D005770), distal intestinal obstruction syndrome (MESH:D007415), meconium ileus (MESH:D000074270), IBD (MESH:D015212), bacterial infection (MESH:D001424), bacterial overgrowth (MESH:D001765), gut hyperplasia (MESH:D006965), impaired intestinal motility (MESH:D007410), tract (MESH:D014570), Malabsorption of nutrients (MESH:D008286), malnutrition (MESH:D044342), Cftr deficient (MESH:D007153), death (MESH:D003643), GI symptoms (MESH:D012816), gastrointestinal complications (MESH:D005767), Failure to thrive (MESH:D005183)
- **Chemicals:** ACh (MESH:D000109), TRIzol (MESH:C411644), water (MESH:D014867), chloride (MESH:D002712), Alexa Fluor 555 (MESH:C000608607), DTT (MESH:D004229), MgCl2 (MESH:D015636), Nylon (MESH:D009757), rapamycin (MESH:D020123), triglycerides (MESH:D014280), agar (MESH:D000362), Triton-X (MESH:D017830), choline (MESH:D002794), Zirconium Oxide (MESH:C028541), Sucrose (MESH:D013395), lipids (MESH:D008055), SYBR Green (MESH:C098022), calcium (MESH:D002118), Glucose (MESH:D005947), Trehalose (MESH:D014199), DAPI (MESH:C007293), KCl (MESH:D011189), acetate (MESH:D000085), PBS (MESH:D007854), sodium (MESH:D012964), glycerol (MESH:D005990), HEPES (MESH:D006531), NaHCO3 (MESH:D017693), Ca2 + (-), Nicotine (MESH:D009538)
- **Species:** Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Mus musculus (house mouse, species) [taxon 10090], Drosophila melanogaster (fruit fly, species) [taxon 7227], Diptera (flies, order) [taxon 7147], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** GCaMP7c — Mus musculus (Mouse), Hybridoma (CVCL_C5I3), H13680-0040 — Homo sapiens (Human), Primary lateral sclerosis, Transformed cell line (CVCL_IK18), HL3 — Paralichthys olivaceus (Bastard halibut), Transformed cell line (CVCL_B6DV)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12923121/full.md

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12923121/full.md

## References

80 references — full list in the complete paper: https://tomesphere.com/paper/PMC12923121/full.md

---
Source: https://tomesphere.com/paper/PMC12923121