# Transcriptomic and chromatin accessibility profiling unveils new regulators of heat hormesis in Caenorhabditis elegans

**Authors:** Hsin-Yun Chang, Sarah E. McMurry, Sicheng Ma, Charles L. Heinke, Christian A. Mansour, Sophia Marie T. Schwab, Charles G. Danko, Siu Sylvia Lee

PMC · DOI: 10.1371/journal.pbio.3003639 · PLOS Biology · 2026-02-20

## TL;DR

This study explores how mild heat stress improves stress resilience and longevity in C. elegans by analyzing gene activity and chromatin changes.

## Contribution

The study identifies novel regulators of heat hormesis and reveals tissue-specific mechanisms underlying stress resilience.

## Key findings

- Heat hormesis induces dynamic transcriptomic and chromatin accessibility changes in C. elegans.
- Key regulators like MARS-1 and ELT-2 are crucial for stress resilience and longevity.
- Germline activity disruption during mild heat stress triggers pro-longevity mechanisms.

## Abstract

Heat hormesis describes the beneficial adaptations resulting from transient exposure to mild heat stress, which enhances stress resilience and promotes healthy aging. While heat hormesis is widely observed, much remains to be learned about its molecular basis. This study bridges a critical knowledge gap through a comprehensive multiomic analysis, providing key insights into the transcriptomic and chromatin accessibility landscapes throughout a heat hormesis regimen in Caenorhabditis elegans. We uncover highly dynamic, dose-dependent molecular responses to heat stress and reveal that while most initial molecular changes induced by mild stress revert to baseline, key differences emerge in response to subsequent heat shock challenge that likely contribute to physiological benefits. We further demonstrate that heat hormesis extends life span specifically in wild-type animals, but not in germline-less mutants, likely due to transient disruption of germline activities during mild heat exposure, which appears sufficient to trigger pro-longevity mechanisms. This finding points to tissue-specific responses in mediating the physiological outcomes of heat hormesis. Importantly, we identify several highly conserved regulators of heat hormesis that likely orchestrate gene expression to enhance stress resilience. Among these regulators, some (MARS-1/MARS1, SNPC-4/SNAPc, FOS-1/c-Fos) are broadly required for heat-hormesis-induced benefits, whereas others (ELT-2/GATA4, DPY-27/SMC4) are uniquely important in specific genetic backgrounds. This study advances our understanding of stress resilience mechanisms, points to multiple new avenues for future investigations, and provides a molecular framework for promoting healthy aging through strategic mid-life stress management.

Exposure to mild heat stress can induce adaptations that promote stress resilience and healthy aging, in a process termed heat hormesis. This study provides a detailed multiomic characterization of the transcriptomic and chromatin accessibility changes that occur during heat hormesis in C elegans, and identifies several novel regulators of this process.

## Linked entities

- **Genes:** MARS1 (methionyl-tRNA synthetase 1) [NCBI Gene 4141], snpc-4 (snRNA-activating protein complex subunit 4 homolog) [NCBI Gene 172711], fos-1 (Transcription factor fos-1) [NCBI Gene 178987], elt-2 (Transcription factor elt-2) [NCBI Gene 181250], dpy-27 (Chromosome condensation protein dpy-27) [NCBI Gene 175492]
- **Proteins:** MARS1 (methionyl-tRNA synthetase 1), FOS (Fos proto-oncogene, AP-1 transcription factor subunit), GATA4 (GATA binding protein 4), SMC4 (structural maintenance of chromosomes 4)
- **Species:** Caenorhabditis elegans (taxon 6239)

## Full-text entities

- **Genes:** smc-4 (Structural maintenance of chromosomes protein 4) [NCBI Gene 175603], HSF1 (heat shock transcription factor 1) [NCBI Gene 3297] {aka HSTF1}, cebp-1 (CCAAT/enhancer-binding protein homolog 1) [NCBI Gene 180481], atf-7 (Transcription factor atf-7) [NCBI Gene 175587], PRG1 (p53-responsive gene 1) [NCBI Gene 23574], hsp-16.41 (Heat shock protein Hsp-16.41) [NCBI Gene 178660], col-64 (Nematode cuticle collagen N-terminal domain-containing protein) [NCBI Gene 186127], hsp-70 (Heat shock protein 70) [NCBI Gene 172757], pqm-1 (Zinc finger transcription factor pqm-1) [NCBI Gene 174705], FOS (Fos proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 2353] {aka AP-1, C-FOS, p55}, daf-16 (Forkhead box protein O) [NCBI Gene 172981], csr-1 (Piwi domain-containing protein) [NCBI Gene 177591], dpy-27 (Chromosome condensation protein dpy-27) [NCBI Gene 175492], glp-1 (glp-1/Notch intracellular domain) [NCBI Gene 176286], fos-1 (Transcription factor fos-1) [NCBI Gene 178987], ZGLP1 (zinc finger GATA like protein 1) [NCBI Gene 100125288] {aka GATAD3, GLP-1, GLP1}, daf-2 (Insulin-like receptor subunit beta;Protein kinase domain-containing protein;receptor protein-tyrosine kinase) [NCBI Gene 175410], elt-2 (Transcription factor elt-2) [NCBI Gene 181250], TFEB (transcription factor EB) [NCBI Gene 7942] {aka ALPHATFEB, BHLHE35, TCFEB}, MARS1 (methionyl-tRNA synthetase 1) [NCBI Gene 4141] {aka CMT2U, ILFS2, ILLD, MARS, METRS, MRS}, snpc-4 (snRNA-activating protein complex subunit 4 homolog) [NCBI Gene 172711], hsf-1 (Heat shock transcription factor hsf-1) [NCBI Gene 173078], mars-1 (Methionine--tRNA ligase, cytoplasmic;tRNA-binding domain-containing protein) [NCBI Gene 178089], elt-6 (Transcription factor elt-6) [NCBI Gene 176993], DCC (DCC netrin 1 receptor) [NCBI Gene 1630] {aka CRC18, CRCR1, HGPPS2, IGDCC1, MRMV1, NTN1R1}, SMC4 (structural maintenance of chromosomes 4) [NCBI Gene 10051] {aka CAP-C, CAPC, SMC-4, SMC4L1}, hsp-12.3 (SHSP domain-containing protein) [NCBI Gene 177777], HIF1A (hypoxia inducible factor 1 subunit alpha) [NCBI Gene 3091] {aka HIF-1-alpha, HIF-1A, HIF-1alpha, HIF1, HIF1-ALPHA, MOP1}, QRSL1 (glutaminyl-tRNA amidotransferase subunit QRSL1) [NCBI Gene 55278] {aka COXPD40, GatA}, SERPINH1 (serpin family H member 1) [NCBI Gene 871] {aka AsTP3, CBP1, CBP2, HSP47, OI10, PIG14}, hlh-30 (Helix-loop-helix protein 30) [NCBI Gene 177157], HSP90B2P (heat shock protein 90 beta family member 2, pseudogene) [NCBI Gene 7190] {aka GRP94P1, GRP94b, HSP, HSPCP2, TRA1P1, TRAP1}
- **Diseases:** died (MESH:D003643), HS (MESH:D012769), dietary (MESH:D000740), WT (MESH:D006969), bacterial infections (MESH:D001424)
- **Chemicals:** Tetracycline (MESH:D013752), DEPC (MESH:D004047), BioRender (-), methionine (MESH:D008715), streptomycin (MESH:D013307), agar (MESH:D000362), amino acid (MESH:D000596), nitrogen (MESH:D009584), Digitonin (MESH:D004072), TRIZOL (MESH:C411644), chloroform (MESH:D002725), lipid (MESH:D008055), IPTG (MESH:D007544), ampicillin (MESH:D000667), water (MESH:D014867), ethanol (MESH:D000431), DAPI (MESH:C007293), isopropanol (MESH:D019840), PBS (MESH:D007854), TWEEN20 (MESH:D011136), Carbenicillin (MESH:D002228)
- **Species:** Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Homo sapiens (human, species) [taxon 9606], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Caenorhabditis elegans (species) [taxon 6239], C elegans [taxon 328850]
- **Mutations:** C for 3-4, M0544S, C for 4-5
- **Cell lines:** HT115 — Homo sapiens (Human), Colon carcinoma, Cancer cell line (CVCL_2520)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12923026/full.md

## References

70 references — full list in the complete paper: https://tomesphere.com/paper/PMC12923026/full.md

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Source: https://tomesphere.com/paper/PMC12923026