# Molecular interplay of ASNS and the PI3K-AKT-mTOR pathway in CMV and HIV co-infections: Therapeutic implications

**Authors:** Hao Zhang, ShuYou Yuan, ShaoXiang Ding, HongXia Bao, WenJun Chen, Bo Cai, JunKai Sun, HaoGang Zhu, Wei Lu, Ye Fang, Opeyemi Iwaloye, Yusuf Oloruntoyin Ayipo, Yusuf Oloruntoyin Ayipo, Yusuf Oloruntoyin Ayipo

PMC · DOI: 10.1371/journal.pone.0342050 · PLOS One · 2026-02-20

## TL;DR

This study explores how ASNS and the PI3K-AKT-mTOR pathway interact in CMV and HIV co-infections, suggesting ASNS as a potential therapeutic target.

## Contribution

The study identifies ASNS as a novel host metabolic-signaling hub in CMV/HIV co-infection pathogenesis.

## Key findings

- ASNS is upregulated in CMV infection and across HIV disease stages, interacting with the PI3K-AKT-mTOR pathway.
- RUNX1 is identified as a key regulator of ASNS and a top biomarker for HIV treatment resistance.
- Cidofovir binds ASNS with high affinity, suggesting its potential as a therapeutic agent.

## Abstract

CMV/HIV coinfection markedly exacerbates disease progression, elevates treatment failure risk, and worsens patient outcomes, yet the underlying molecular mechanisms remain incompletely understood—creating an urgent need for targeted host-focused research. This study identifies asparagine synthetase (ASNS) as a pivotal metabolic-signaling hub in coinfection pathogenesis, with critical interactions with the PI3K-AKT-mTOR pathway. Using integrated bioinformatics analyses of transcriptomic data, ASNS emerged as a central hub in protein-protein interaction networks, with robust positive co-expression alongside key PI3K-AKT-mTOR components (PIK3CA, MTOR, AKT2, AKT3), while machine learning validated AKT2 as a critical node. ASNS was consistently upregulated 48 hours following CMV infection and across all HIV disease stages, while single-cell RNA sequencing localized ASNS and MDM2 to plasma cells in HIV-positive individuals—implicating their role in virus-driven immune responses. Transcription factor analysis identified RUNX1 as a central regulator: bioinformatics predictions confirmed RUNX1 binds to the ASNS promoter, and validation studies identified RUNX1 as the top biomarker for HIV treatment resistance (AUC = 0.714). Molecular docking and 200-ns dynamics simulations showed that cidofovir—an approved antiviral agent—binds ASNS with high affinity (−6.61 kcal/mol) through nine hydrogen bonds, forming a more stable complex than ASNS-ONL, with VAL-51 and ASN-74 as key residues. Collectively, these findings establish ASNS as a host metabolic-signaling hub exploited by CMV and HIV, highlighting its potential as a novel therapeutic target. Targeting ASNS, particularly at residues VAL-51 and ASN-74, may offer a promising host-directed strategy to improve coinfection treatment outcomes. This work lays the groundwork for experimental validation and the development of targeted therapies for CMV/HIV coinfection.

## Linked entities

- **Genes:** ASNS (asparagine synthetase (glutamine-hydrolyzing)) [NCBI Gene 440], PIK3CA (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) [NCBI Gene 5290], MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475], AKT2 (AKT serine/threonine kinase 2) [NCBI Gene 208], AKT3 (AKT serine/threonine kinase 3) [NCBI Gene 10000], RUNX1 (RUNX family transcription factor 1) [NCBI Gene 861], MDM2 (MDM2 proto-oncogene) [NCBI Gene 4193]
- **Proteins:** ASNS (asparagine synthetase (glutamine-hydrolyzing)), RUNX1 (RUNX family transcription factor 1)
- **Chemicals:** cidofovir (PubChem CID 60613)

## Full-text entities

- **Genes:** RUNX1 (RUNX family transcription factor 1) [NCBI Gene 861] {aka AML1, AML1-EVI-1, AMLCR1, CBF2alpha, CBFA2, EVI-1}, IFNA1 (interferon alpha 1) [NCBI Gene 3439] {aka IFL, IFN, IFN-ALPHA, IFN-alphaD, IFNA13, IFNA@}, S100A9 (S100 calcium binding protein A9) [NCBI Gene 6280] {aka 60B8AG, CAGB, CFAG, CGLB, L1AG, LIAG}, MCC (MCC regulator of Wnt signaling pathway) [NCBI Gene 4163] {aka MCC1}, PIK3CA (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) [NCBI Gene 5290] {aka CCM4, CLAPO, CLOVE, CWS5, HMH, MCAP}, IGKC (immunoglobulin kappa constant) [NCBI Gene 3514] {aka HCAK1, IGKCD, Km}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, SMARCA4 (SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4) [NCBI Gene 6597] {aka BAF190, BAF190A, BRG1, CSS4, MRD16, OTSC12}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, IGLL5 (immunoglobulin lambda like polypeptide 5) [NCBI Gene 100423062] {aka IGLV, VL-MAR}, AKT2 (AKT serine/threonine kinase 2) [NCBI Gene 208] {aka HIHGHH, PKBB, PKBBETA, PRKBB, RAC-BETA}, ASNS (asparagine synthetase (glutamine-hydrolyzing)) [NCBI Gene 440] {aka ASNSD, TS11}, LAG3 (lymphocyte activating 3) [NCBI Gene 3902] {aka CD223}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, RCOR1 (REST corepressor 1) [NCBI Gene 23186] {aka COREST, RCOR}, LYZ (lysozyme) [NCBI Gene 4069] {aka AMYLD5, LYZF1, LZM}, F3 (coagulation factor III, tissue factor) [NCBI Gene 2152] {aka CD142, TF, TFA}, MYB (MYB proto-oncogene, transcription factor) [NCBI Gene 4602] {aka Cmyb, c-myb, c-myb_CDS, efg}, S100A8 (S100 calcium binding protein A8) [NCBI Gene 6279] {aka 60B8AG, CAGA, CFAG, CGLA, CP-10, L1Ag}, MDM2 (MDM2 proto-oncogene) [NCBI Gene 4193] {aka ACTFS, HDMX, LSKB, hdm2}, JCHAIN (joining chain of multimeric IgA and IgM) [NCBI Gene 3512] {aka IGCJ, IGJ, JCH}, ITPRIPL1 (ITPRIP like 1) [NCBI Gene 150771] {aka D1B, KIAA1754L}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, BRD4 (bromodomain containing 4) [NCBI Gene 23476] {aka CAP, CDLS6, FSHRG4, HUNK1, HUNKI, MCAP}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, PF4 (platelet factor 4) [NCBI Gene 5196] {aka CXCL4, PF-4, SCYB4}, ATF4 (activating transcription factor 4) [NCBI Gene 468] {aka CREB-2, CREB2, TAXREB67, TXREB}, ZFX (zinc finger protein X-linked) [NCBI Gene 7543] {aka MRXS37, ZNF926}, MZB1 (marginal zone B and B1 cell specific protein) [NCBI Gene 51237] {aka MEDA-7, PACAP, pERp1}, STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, AKT3 (AKT serine/threonine kinase 3) [NCBI Gene 10000] {aka MPPH, MPPH2, PKB-GAMMA, PKBG, PRKBG, RAC-PK-gamma}
- **Diseases:** CMV reactivation (MESH:D000085343), CMV/HIV coinfection (MESH:D015658), hypergammaglobulinemia (MESH:D006942), CMV and HIV co-infection (MESH:D003586), AIDS (MESH:D000163), tumor (MESH:D009369), gastrointestinal disorders (MESH:D005767), retinitis (MESH:D012173), immune dysfunction (MESH:D007154), encephalitis (MESH:D004660), SASA (MESH:D010534), HCMV infection (MESH:D007239), HIV virologic failure (MESH:D051437), viral (MESH:D014777), CMV-HIV coinfection (MESH:D060085), chronic inflammation (MESH:D007249)
- **Chemicals:** Hydrogen (MESH:D006859), Bisabosqual A (MESH:C581734), VAL (MESH:D014633), water (MESH:D014867), ARG (MESH:D001120), Amino Acid (MESH:D000596), Cidofovir (MESH:D000077404), ganciclovir (MESH:D015774), acid (MESH:D000143), GLN-59 (-)
- **Species:** Cytomegalovirus (genus) [taxon 10358], Human immunodeficiency virus 1 (no rank) [taxon 11676], Homo sapiens (human, species) [taxon 9606], Human immunodeficiency virus (species) [taxon 12721]

## Full text

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## Figures

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## References

24 references — full list in the complete paper: https://tomesphere.com/paper/PMC12923000/full.md

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Source: https://tomesphere.com/paper/PMC12923000